Wall clock time and date at job start Tue Mar 31 2020 22:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46980 * 299.99718 * 3 2 1 6 6 H 1.48500 * 109.47274 * 59.99710 * 3 2 1 7 7 C 1.40032 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99719 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78462 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.13367 * 180.02562 * 10 9 7 12 12 C 1.38695 * 118.67305 * 0.02562 * 11 10 9 13 13 C 1.39673 * 119.49128 * 359.97438 * 12 11 10 14 14 N 1.39111 * 119.57805 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00406 * 174.66794 * 14 13 12 16 16 O 1.21366 * 119.99916 * 5.15021 * 15 14 13 17 17 C 1.49365 * 120.00402 * 185.15093 * 15 14 13 18 18 O 1.21360 * 120.00080 * 359.97438 * 17 15 14 19 19 N 1.34779 * 119.99959 * 180.02562 * 17 15 14 20 20 C 1.46506 * 119.99917 * 180.02562 * 19 17 15 21 21 H 1.09005 * 110.01372 * 325.70406 * 20 19 17 22 22 C 1.54261 * 110.03185 * 87.08915 * 20 19 17 23 23 C 1.55016 * 104.13512 * 95.68619 * 22 20 19 24 24 C 1.54890 * 102.75350 * 37.95235 * 23 22 20 25 25 C 1.53871 * 110.03221 * 204.31100 * 20 19 17 26 26 F 1.39908 * 110.03270 * 359.97438 * 25 20 19 27 27 F 1.39903 * 110.03496 * 121.38057 * 25 20 19 28 28 N 1.31957 * 120.84180 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.43857 * 0.28118 * 10 9 7 31 31 H 1.07997 * 120.66315 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25767 * 180.02562 * 12 11 10 33 33 H 0.97005 * 119.99920 * 354.66756 * 14 13 12 34 34 H 0.96996 * 120.00461 * 359.97438 * 19 17 15 35 35 H 1.09004 * 110.48928 * 214.35251 * 22 20 19 36 36 H 1.08993 * 110.49008 * 336.99773 * 22 20 19 37 37 H 1.08996 * 110.76774 * 279.62789 * 23 22 20 38 38 H 1.09003 * 110.74219 * 156.26019 * 23 22 20 39 39 H 1.09007 * 110.48566 * 203.36959 * 24 23 22 40 40 H 1.08994 * 110.48836 * 80.72523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0010 9 6 1.3009 -2.4367 0.0016 10 6 2.0086 -3.6519 0.0016 11 6 1.3035 -4.8418 0.0022 12 6 -0.0826 -4.7939 0.0022 13 6 -0.7278 -3.5551 0.0021 14 7 -2.1180 -3.5051 0.0027 15 6 -2.7496 -2.3195 0.1111 16 8 -2.1090 -1.2887 0.1142 17 6 -4.2381 -2.2740 0.2275 18 8 -4.8788 -3.3047 0.2240 19 7 -4.8697 -1.0883 0.3355 20 6 -6.3295 -1.0437 0.4502 21 1 -6.7745 -1.8484 -0.1352 22 6 -6.7475 -1.1731 1.9295 23 6 -6.9364 0.2921 2.3991 24 6 -7.5746 0.9685 1.1604 25 6 -6.8554 0.3171 -0.0389 26 9 -5.7888 1.1225 -0.4526 27 9 -7.7541 0.1322 -1.0950 28 7 -0.0355 -2.4318 0.0027 29 1 -0.4850 0.8400 -0.0004 30 1 3.0886 -3.6561 0.0054 31 1 1.8219 -5.7892 0.0018 32 1 -0.6586 -5.7074 0.0030 33 1 -2.6329 -4.3235 -0.0750 34 1 -4.3577 -0.2644 0.3379 35 1 -7.6836 -1.7251 2.0146 36 1 -5.9621 -1.6611 2.5066 37 1 -5.9756 0.7487 2.6365 38 1 -7.6098 0.3394 3.2549 39 1 -7.3926 2.0432 1.1765 40 1 -8.6441 0.7623 1.1218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890285034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:48 Heat of formation + Delta-G solvation = -107.742279 kcal Electronic energy + Delta-G solvation = -29631.270365 eV Core-core repulsion = 25082.767913 eV Total energy + Delta-G solvation = -4548.502452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.23164 -47.30382 -40.37308 -38.88589 -37.64493 -37.07954 -34.56100 -33.66669 -32.99671 -30.39908 -29.28895 -28.66791 -28.03478 -25.77814 -24.43578 -22.05660 -21.63022 -21.27271 -20.61689 -19.75003 -18.59676 -18.03825 -17.55401 -16.81151 -16.54763 -16.17972 -15.89905 -15.38576 -14.77967 -14.71094 -14.60744 -14.54537 -14.49270 -13.99599 -13.75529 -13.62356 -13.54737 -13.38277 -12.91332 -12.69791 -12.48890 -12.06326 -12.03150 -11.86150 -11.66166 -11.36566 -11.22360 -11.11440 -11.06078 -10.99294 -10.68791 -10.53795 -9.96883 -9.83247 -9.35701 -9.11933 -9.07249 -8.05076 -7.35604 -7.08300 -6.23206 -4.46369 1.80891 2.52169 2.79309 3.05980 3.14369 3.17693 3.22080 3.30479 3.49823 3.77627 3.89461 3.95055 4.01485 4.22833 4.64898 4.72842 4.79910 4.85415 4.91364 4.97735 5.02391 5.27638 5.46476 5.53707 5.68934 5.76155 5.95379 6.04912 6.15558 6.41112 6.55160 6.72784 6.78157 7.11870 7.16356 7.44799 7.50644 7.74770 7.82485 7.98597 8.11711 8.34935 8.60061 8.90546 8.99518 10.12792 10.40319 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.003628 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.759859 B = 7716.332864 C = 9394.010211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.662 5.662 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.271 3.729 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.368 3.632 14 N -0.638 5.638 15 C 0.468 3.532 16 O -0.383 6.383 17 C 0.514 3.486 18 O -0.529 6.529 19 N -0.699 5.699 20 C 0.103 3.897 21 H 0.119 0.881 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.160 4.160 25 C 0.278 3.722 26 F -0.187 7.187 27 F -0.193 7.193 28 N -0.475 5.475 29 H 0.272 0.728 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.421 0.579 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 2.259 3.747 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.281 5.281 2 C -0.169 4.169 3 Si 0.722 3.278 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.130 3.870 14 N -0.286 5.286 15 C 0.244 3.756 16 O -0.245 6.245 17 C 0.296 3.704 18 O -0.405 6.405 19 N -0.356 5.356 20 C -0.003 4.003 21 H 0.137 0.863 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.198 4.198 25 C 0.241 3.759 26 F -0.167 7.167 27 F -0.173 7.173 28 N -0.194 5.194 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.260 0.740 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.342 3.340 3.712 17.088 hybrid contribution 0.691 -0.148 -0.326 0.778 sum -15.651 3.193 3.386 16.328 Atomic orbital electron populations 1.70300 1.05950 1.27363 1.24497 1.26166 0.95126 1.00692 0.94966 0.86427 0.80933 0.82012 0.78414 1.18563 1.20004 1.20027 1.19634 0.94175 0.89290 1.42254 0.89779 1.18369 0.86944 0.92076 0.88025 1.21656 0.98690 0.93462 1.18484 1.20585 0.93065 0.96680 0.95691 1.20504 0.94827 0.94904 1.27208 1.18527 0.82555 0.91267 0.94664 1.42967 1.05334 1.09006 1.71304 1.19984 0.86844 0.86204 0.82603 1.91230 1.64373 1.30686 1.38189 1.20909 0.89959 0.83442 0.76063 1.90702 1.68139 1.33060 1.48604 1.45653 1.05931 1.10358 1.73635 1.22523 0.82431 0.96143 0.99229 0.86306 1.22825 1.03266 0.97466 0.93457 1.22571 1.01964 0.94850 0.96829 1.23387 1.01583 1.02161 0.92675 1.22051 0.78968 0.90454 0.84474 1.93010 1.57223 1.74857 1.91658 1.93043 1.68039 1.95747 1.60514 1.68634 1.07320 1.23150 1.20307 0.91653 0.88355 0.88346 0.88716 0.75290 0.73991 0.89357 0.89331 0.90037 0.89538 0.88352 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.60 8.99 55.55 0.50 -17.10 16 2 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 3 Si 0.90 18.73 29.56 -169.99 -5.02 13.71 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.42 -11.33 9.14 -37.73 -0.34 -11.68 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.27 7.44 6.55 -85.00 -0.56 6.89 16 10 C -0.30 -7.39 9.83 -38.66 -0.38 -7.77 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.20 16 12 C -0.35 -7.79 9.96 -38.88 -0.39 -8.18 16 13 C 0.37 8.93 7.42 -155.09 -1.15 7.78 16 14 N -0.64 -13.12 5.37 -11.84 -0.06 -13.18 16 15 C 0.47 9.57 7.84 -11.63 -0.09 9.48 16 16 O -0.38 -9.07 12.24 5.48 0.07 -9.01 16 17 C 0.51 8.66 7.88 -11.62 -0.09 8.57 16 18 O -0.53 -9.21 16.15 5.49 0.09 -9.12 16 19 N -0.70 -9.84 4.86 -53.18 -0.26 -10.10 16 20 C 0.10 1.15 3.08 -66.81 -0.21 0.95 16 21 H 0.12 1.40 7.46 -51.93 -0.39 1.01 16 22 C -0.13 -1.14 6.54 -25.01 -0.16 -1.30 16 23 C -0.12 -0.85 6.91 -24.67 -0.17 -1.03 16 24 C -0.16 -1.13 6.40 -25.07 -0.16 -1.29 16 25 C 0.28 2.91 2.57 -25.61 -0.07 2.85 16 26 F -0.19 -2.38 15.39 2.25 0.03 -2.34 16 27 F -0.19 -2.24 17.04 2.25 0.04 -2.20 16 28 N -0.47 -13.04 5.73 -10.28 -0.06 -13.10 16 29 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.41 7.20 8.18 -40.82 -0.33 6.87 16 34 H 0.42 6.10 6.83 -40.82 -0.28 5.82 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.10 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -31.57 347.91 -8.04 -39.61 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.34 Total: 12.11 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -4.26 Total: 5.48 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.12 Total: -53.48 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.16 Total: -18.12 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.57 -8.04 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890285034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.134 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds