Wall clock time and date at job start Tue Mar 31 2020 22:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99917 * 2 1 4 4 H 1.48496 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46980 * 299.99718 * 3 2 1 6 6 H 1.48500 * 109.47274 * 59.99710 * 3 2 1 7 7 C 1.40032 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99719 * 180.02562 * 7 2 1 9 9 C 1.41339 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78462 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.13367 * 180.02562 * 10 9 7 12 12 C 1.38695 * 118.67305 * 0.02562 * 11 10 9 13 13 C 1.39673 * 119.49128 * 359.97438 * 12 11 10 14 14 N 1.39111 * 119.57805 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00406 * 174.66794 * 14 13 12 16 16 O 1.21366 * 119.99916 * 5.15021 * 15 14 13 17 17 C 1.49365 * 120.00402 * 185.15093 * 15 14 13 18 18 O 1.21360 * 120.00080 * 359.97438 * 17 15 14 19 19 N 1.34779 * 119.99959 * 180.02562 * 17 15 14 20 20 C 1.46506 * 119.99917 * 180.02562 * 19 17 15 21 21 H 1.09005 * 110.01372 * 325.70406 * 20 19 17 22 22 C 1.54261 * 110.03185 * 87.08915 * 20 19 17 23 23 C 1.55016 * 104.13512 * 95.68619 * 22 20 19 24 24 C 1.54890 * 102.75350 * 37.95235 * 23 22 20 25 25 C 1.53871 * 110.03221 * 204.31100 * 20 19 17 26 26 F 1.39908 * 110.03270 * 359.97438 * 25 20 19 27 27 F 1.39903 * 110.03496 * 121.38057 * 25 20 19 28 28 N 1.31957 * 120.84180 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.43857 * 0.28118 * 10 9 7 31 31 H 1.07997 * 120.66315 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.25767 * 180.02562 * 12 11 10 33 33 H 0.97005 * 119.99920 * 354.66756 * 14 13 12 34 34 H 0.96996 * 120.00461 * 359.97438 * 19 17 15 35 35 H 1.09004 * 110.48928 * 214.35251 * 22 20 19 36 36 H 1.08993 * 110.49008 * 336.99773 * 22 20 19 37 37 H 1.08996 * 110.76774 * 279.62789 * 23 22 20 38 38 H 1.09003 * 110.74219 * 156.26019 * 23 22 20 39 39 H 1.09007 * 110.48566 * 203.36959 * 24 23 22 40 40 H 1.08994 * 110.48836 * 80.72523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0010 9 6 1.3009 -2.4367 0.0016 10 6 2.0086 -3.6519 0.0016 11 6 1.3035 -4.8418 0.0022 12 6 -0.0826 -4.7939 0.0022 13 6 -0.7278 -3.5551 0.0021 14 7 -2.1180 -3.5051 0.0027 15 6 -2.7496 -2.3195 0.1111 16 8 -2.1090 -1.2887 0.1142 17 6 -4.2381 -2.2740 0.2275 18 8 -4.8788 -3.3047 0.2240 19 7 -4.8697 -1.0883 0.3355 20 6 -6.3295 -1.0437 0.4502 21 1 -6.7745 -1.8484 -0.1352 22 6 -6.7475 -1.1731 1.9295 23 6 -6.9364 0.2921 2.3991 24 6 -7.5746 0.9685 1.1604 25 6 -6.8554 0.3171 -0.0389 26 9 -5.7888 1.1225 -0.4526 27 9 -7.7541 0.1322 -1.0950 28 7 -0.0355 -2.4318 0.0027 29 1 -0.4850 0.8400 -0.0004 30 1 3.0886 -3.6561 0.0054 31 1 1.8219 -5.7892 0.0018 32 1 -0.6586 -5.7074 0.0030 33 1 -2.6329 -4.3235 -0.0750 34 1 -4.3577 -0.2644 0.3379 35 1 -7.6836 -1.7251 2.0146 36 1 -5.9621 -1.6611 2.5066 37 1 -5.9756 0.7487 2.6365 38 1 -7.6098 0.3394 3.2549 39 1 -7.3926 2.0432 1.1765 40 1 -8.6441 0.7623 1.1218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890285034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:47 Heat of formation + Delta-G solvation = -127.605888 kcal Electronic energy + Delta-G solvation = -29632.131716 eV Core-core repulsion = 25082.767913 eV Total energy + Delta-G solvation = -4549.363802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.12896 -48.21708 -41.82985 -40.45104 -39.12026 -38.29142 -36.21457 -35.12823 -34.56807 -32.27815 -31.10953 -29.54571 -28.82856 -27.62794 -25.93775 -23.62872 -23.05606 -22.33865 -21.72754 -21.12538 -20.16269 -19.21458 -18.91522 -18.21114 -17.76007 -17.38050 -17.23259 -16.79012 -16.44513 -16.29414 -15.85824 -15.64272 -15.48845 -15.40587 -14.98935 -14.95105 -14.87149 -14.65825 -14.47205 -13.92693 -13.78059 -13.37278 -13.33798 -12.91225 -12.74883 -12.67924 -12.58694 -12.56158 -12.32473 -12.30796 -12.03684 -11.75013 -11.73856 -11.63232 -10.93725 -10.69387 -10.48597 -9.94569 -9.21775 -8.93729 -8.09703 -6.43398 0.29171 0.99776 1.19757 1.26475 1.42245 1.53058 1.56113 2.26855 2.29083 2.45395 2.51311 2.79002 2.96932 3.08707 3.37841 3.46382 3.95502 3.97961 4.00865 4.14554 4.22288 4.32137 4.38808 4.64195 4.66870 4.78912 4.81005 4.93800 4.94619 4.97933 5.02639 5.09754 5.23102 5.25279 5.61376 5.68822 5.84597 5.90894 6.10368 6.26604 6.48572 6.63853 6.78260 7.03004 7.25050 8.24248 8.54331 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.003628 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.759859 B = 7716.332864 C = 9394.010211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.014 3.986 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.460 4.460 8 H 0.088 0.912 9 C 0.237 3.763 10 C -0.321 4.321 11 C -0.033 4.033 12 C -0.341 4.341 13 C 0.346 3.654 14 N -0.631 5.631 15 C 0.461 3.539 16 O -0.418 6.418 17 C 0.526 3.474 18 O -0.535 6.535 19 N -0.689 5.689 20 C 0.095 3.905 21 H 0.113 0.887 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.149 4.149 25 C 0.269 3.731 26 F -0.203 7.203 27 F -0.200 7.200 28 N -0.507 5.507 29 H 0.273 0.727 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.425 0.575 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 2.089 4.538 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.211 4.211 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.106 0.894 9 C 0.112 3.888 10 C -0.344 4.344 11 C -0.057 4.057 12 C -0.366 4.366 13 C 0.108 3.892 14 N -0.281 5.281 15 C 0.238 3.762 16 O -0.283 6.283 17 C 0.307 3.693 18 O -0.412 6.412 19 N -0.344 5.344 20 C -0.010 4.010 21 H 0.131 0.869 22 C -0.165 4.165 23 C -0.156 4.156 24 C -0.187 4.187 25 C 0.233 3.767 26 F -0.185 7.185 27 F -0.181 7.181 28 N -0.226 5.226 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.263 0.737 34 H 0.257 0.743 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.786 3.139 4.507 18.614 hybrid contribution 1.053 -0.256 -0.601 1.240 sum -16.732 2.883 3.906 17.422 Atomic orbital electron populations 1.70458 1.07390 1.28183 1.25380 1.26989 0.96006 1.03927 0.94181 0.85259 0.79587 0.77081 0.78412 1.17874 1.19685 1.19425 1.19947 0.94565 0.90310 1.44300 0.89426 1.18858 0.87632 0.93531 0.88818 1.21857 0.99436 0.93671 1.19403 1.21051 0.93249 0.97599 0.93818 1.20960 0.95347 0.95512 1.24809 1.18988 0.83955 0.91579 0.94656 1.42948 1.04297 1.09929 1.70907 1.20628 0.88512 0.85632 0.81402 1.91227 1.65712 1.31759 1.39559 1.20100 0.88112 0.84279 0.76829 1.90699 1.67624 1.33284 1.49566 1.45651 1.07451 1.09193 1.72090 1.22856 0.80084 0.96701 1.01364 0.86875 1.22837 1.03715 0.99066 0.90913 1.22582 1.02186 0.93134 0.97662 1.23435 1.02428 1.02364 0.90442 1.22484 0.78808 0.90131 0.85321 1.92979 1.58271 1.75250 1.91955 1.93026 1.68127 1.95785 1.61173 1.68589 1.07686 1.24995 1.21375 0.91630 0.87323 0.84229 0.85162 0.73655 0.74255 0.86956 0.90854 0.91144 0.86682 0.87414 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -38.39 8.99 21.84 0.20 -38.19 16 2 C 0.01 0.76 5.50 85.29 0.47 1.22 16 3 Si 0.98 39.47 29.56 68.60 2.03 41.49 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.46 -25.55 9.14 23.47 0.21 -25.33 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.24 13.42 6.55 40.21 0.26 13.69 16 10 C -0.32 -15.88 9.83 22.87 0.22 -15.66 16 11 C -0.03 -1.42 10.15 22.40 0.23 -1.20 16 12 C -0.34 -14.71 9.96 22.73 0.23 -14.48 16 13 C 0.35 16.92 7.42 133.29 0.99 17.91 16 14 N -0.63 -26.12 5.37 -309.72 -1.66 -27.78 16 15 C 0.46 19.34 7.84 87.24 0.68 20.02 16 16 O -0.42 -20.69 12.24 -3.30 -0.04 -20.73 16 17 C 0.53 17.84 7.88 87.24 0.69 18.53 16 18 O -0.53 -18.32 16.15 -3.28 -0.05 -18.38 16 19 N -0.69 -19.55 4.86 -440.51 -2.14 -21.69 16 20 C 0.10 2.05 3.08 45.71 0.14 2.19 16 21 H 0.11 2.58 7.46 -2.38 -0.02 2.56 16 22 C -0.13 -1.95 6.54 31.71 0.21 -1.74 16 23 C -0.12 -1.32 6.91 31.93 0.22 -1.10 16 24 C -0.15 -1.71 6.40 31.67 0.20 -1.51 16 25 C 0.27 5.35 2.57 31.32 0.08 5.43 16 26 F -0.20 -5.17 15.39 44.97 0.69 -4.47 16 27 F -0.20 -4.45 17.04 44.97 0.77 -3.68 16 28 N -0.51 -28.66 5.73 -186.44 -1.07 -29.73 16 29 H 0.27 14.01 8.29 -92.71 -0.77 13.24 16 30 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 31 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.43 14.62 8.18 -92.70 -0.76 13.86 16 34 H 0.42 12.51 6.83 -92.71 -0.63 11.87 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 1.10 8.11 -2.38 -0.02 1.08 16 40 H 0.13 0.89 8.12 -2.39 -0.02 0.87 16 Total: -1.00 -71.03 347.91 3.29 -67.74 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.27 Total: 37.44 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 4.84 Total: 17.98 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.68 Total: -117.39 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.09 Total: -39.11 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.46 Total: -8.15 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Total: -71.03 3.29 -67.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890285034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.865 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds