Wall clock time and date at job start Tue Mar 31 2020 22:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47105 * 274.98884 * 3 2 1 5 5 H 1.48501 * 109.46916 * 34.98599 * 3 2 1 6 6 H 1.48502 * 109.46955 * 154.98873 * 3 2 1 7 7 C 1.40026 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00150 * 173.65378 * 7 2 1 9 9 C 1.41338 * 120.00229 * 353.64459 * 7 2 1 10 10 C 1.40629 * 119.78643 * 186.34358 * 9 7 2 11 11 C 1.38309 * 119.13633 * 180.02562 * 10 9 7 12 12 C 1.38695 * 118.66580 * 359.72993 * 11 10 9 13 13 C 1.39662 * 119.49788 * 0.53799 * 12 11 10 14 14 N 1.39121 * 119.58264 * 179.72973 * 13 12 11 15 15 C 1.34774 * 119.99561 * 341.02610 * 14 13 12 16 16 O 1.21364 * 119.99994 * 354.40175 * 15 14 13 17 17 C 1.49365 * 119.99803 * 174.39726 * 15 14 13 18 18 O 1.21355 * 120.00288 * 0.02562 * 17 15 14 19 19 N 1.34782 * 120.00043 * 179.97438 * 17 15 14 20 20 C 1.46496 * 119.99957 * 180.02562 * 19 17 15 21 21 H 1.08998 * 110.02104 * 326.39444 * 20 19 17 22 22 C 1.53876 * 110.03203 * 204.99793 * 20 19 17 23 23 C 1.54260 * 106.60118 * 240.66664 * 22 20 19 24 24 C 1.54887 * 104.19738 * 336.39415 * 23 22 20 25 25 C 1.54276 * 110.07277 * 87.81180 * 20 19 17 26 26 F 1.39899 * 110.48602 * 24.23778 * 25 20 19 27 27 F 1.39893 * 110.48398 * 261.59289 * 25 20 19 28 28 N 1.31964 * 120.84347 * 359.44840 * 13 12 11 29 29 H 0.97001 * 119.99411 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.43528 * 0.02562 * 10 9 7 31 31 H 1.07991 * 120.66706 * 180.02562 * 11 10 9 32 32 H 1.08005 * 120.25172 * 180.28623 * 12 11 10 33 33 H 0.96996 * 120.00364 * 161.02844 * 14 13 12 34 34 H 0.97006 * 119.99731 * 0.02562 * 19 17 15 35 35 H 1.09000 * 110.02994 * 121.38114 * 22 20 19 36 36 H 1.09001 * 110.07504 * 359.97438 * 22 20 19 37 37 H 1.08997 * 110.49000 * 217.70967 * 23 22 20 38 38 H 1.09008 * 110.59579 * 95.12577 * 23 22 20 39 39 H 1.08995 * 110.75721 * 156.25861 * 24 23 22 40 40 H 1.09001 * 110.75429 * 279.62183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4956 2.6199 0.8028 6 1 3.5878 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2156 -0.1039 9 6 1.3074 -2.4330 0.1344 10 6 2.0215 -3.6371 0.2677 11 6 1.3227 -4.8235 0.3984 12 6 -0.0636 -4.7826 0.3989 13 6 -0.7154 -3.5555 0.2572 14 7 -2.1059 -3.5131 0.2519 15 6 -2.8132 -4.6320 -0.0014 16 8 -2.2403 -5.6519 -0.3244 17 6 -4.3022 -4.6167 0.1156 18 8 -4.8752 -3.5967 0.4382 19 7 -5.0096 -5.7355 -0.1382 20 6 -6.4701 -5.7204 -0.0240 21 1 -6.7750 -5.0435 0.7740 22 6 -6.9912 -7.1399 0.2608 23 6 -7.9208 -7.5119 -0.9127 24 6 -8.3789 -6.1462 -1.4821 25 6 -7.1011 -5.2793 -1.3610 26 9 -6.2296 -5.5408 -2.4236 27 9 -7.4330 -3.9209 -1.3211 28 7 -0.0291 -2.4352 0.1339 29 1 -0.4849 0.8401 -0.0004 30 1 3.1015 -3.6355 0.2681 31 1 1.8461 -5.7624 0.5027 32 1 -0.6348 -5.6932 0.5040 33 1 -2.5664 -2.6782 0.4304 34 1 -4.5517 -6.5508 -0.3964 35 1 -7.5490 -7.1519 1.1972 36 1 -6.1581 -7.8407 0.3138 37 1 -8.7775 -8.0828 -0.5547 38 1 -7.3761 -8.0771 -1.6691 39 1 -8.6818 -6.2443 -2.5245 40 1 -9.1872 -5.7290 -0.8815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890285035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:50 Heat of formation + Delta-G solvation = -142.607421 kcal Electronic energy + Delta-G solvation = -29083.879053 eV Core-core repulsion = 24533.864735 eV Total energy + Delta-G solvation = -4550.014318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.93982 -48.10721 -42.19848 -40.63539 -39.40919 -38.44878 -36.37407 -35.28420 -34.83365 -32.41207 -31.32059 -29.62564 -28.79955 -27.62704 -26.08262 -23.61575 -23.27140 -22.23158 -21.94946 -21.52389 -20.06290 -19.40723 -18.79280 -18.47873 -17.88240 -17.73411 -17.34755 -16.99842 -16.60196 -16.38553 -16.29571 -15.81056 -15.46304 -15.28573 -15.11271 -15.02579 -14.74814 -14.63015 -14.43299 -14.21560 -13.86385 -13.43318 -13.30318 -13.17430 -12.96954 -12.76507 -12.69439 -12.63960 -12.35962 -12.28648 -12.01802 -11.88074 -11.73099 -11.64669 -11.10196 -10.68536 -10.51208 -10.06026 -9.71051 -9.13150 -8.35212 -6.55263 -0.07732 0.87231 1.00518 1.10799 1.41307 1.51834 1.57289 1.94022 2.22201 2.34927 2.65674 2.82744 2.86189 3.06853 3.17404 3.51030 3.84854 3.95013 4.03026 4.20078 4.22535 4.27700 4.40664 4.49204 4.66102 4.78447 4.80673 4.82580 4.85508 4.92300 5.05689 5.15644 5.18756 5.27956 5.46467 5.52740 5.71381 5.86278 5.99077 6.16095 6.28107 6.52158 6.68747 6.74204 6.93183 8.02159 8.41108 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002659 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.768999 B =10526.717479 C =11572.345109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.023 3.977 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.462 4.462 8 H 0.097 0.903 9 C 0.242 3.758 10 C -0.297 4.297 11 C -0.045 4.045 12 C -0.319 4.319 13 C 0.337 3.663 14 N -0.618 5.618 15 C 0.508 3.492 16 O -0.509 6.509 17 C 0.521 3.479 18 O -0.528 6.528 19 N -0.677 5.677 20 C 0.098 3.902 21 H 0.118 0.882 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.149 4.149 25 C 0.241 3.759 26 F -0.205 7.205 27 F -0.211 7.211 28 N -0.535 5.535 29 H 0.279 0.721 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.419 0.581 34 H 0.426 0.574 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.069 -14.019 0.519 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.494 4.494 8 H 0.115 0.885 9 C 0.116 3.884 10 C -0.320 4.320 11 C -0.069 4.069 12 C -0.343 4.343 13 C 0.103 3.897 14 N -0.263 5.263 15 C 0.290 3.710 16 O -0.384 6.384 17 C 0.300 3.700 18 O -0.404 6.404 19 N -0.331 5.331 20 C -0.008 4.008 21 H 0.136 0.864 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.187 4.187 25 C 0.204 3.796 26 F -0.186 7.186 27 F -0.192 7.192 28 N -0.254 5.254 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.256 0.744 34 H 0.266 0.734 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.718 -13.097 0.427 22.849 hybrid contribution 1.047 0.622 -0.300 1.254 sum -17.671 -12.476 0.127 21.632 Atomic orbital electron populations 1.70212 1.09012 1.29203 1.29382 1.27041 0.95723 1.04730 0.92389 0.85079 0.79181 0.75536 0.79205 1.18908 1.19468 1.17525 1.19994 0.95408 0.90112 1.43860 0.88536 1.18739 0.86756 0.93741 0.89149 1.21976 0.99891 0.93501 1.16582 1.21218 0.93342 0.97799 0.94540 1.21806 0.95462 0.97531 1.19531 1.18790 0.83457 0.91759 0.95688 1.42922 1.04952 1.12876 1.65572 1.20240 0.88661 0.83595 0.78516 1.90647 1.71035 1.32089 1.44659 1.19785 0.87126 0.84730 0.78319 1.90804 1.71381 1.32133 1.46066 1.45660 1.06987 1.13023 1.67440 1.23076 0.78467 1.03448 0.95768 0.86389 1.22501 1.01231 0.90395 1.01675 1.22408 1.00705 0.95093 0.97067 1.23534 0.93669 0.95755 1.05788 1.23202 0.91947 0.78124 0.86368 1.92978 1.72358 1.93683 1.59594 1.93009 1.92954 1.36517 1.96762 1.68026 1.09120 1.25844 1.22445 0.91040 0.86253 0.84214 0.84123 0.74396 0.73405 0.86492 0.88333 0.86477 0.90161 0.88075 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.26 11.49 21.84 0.25 -41.01 16 2 C 0.02 1.18 5.49 85.29 0.47 1.65 16 3 Si 0.99 38.36 29.56 68.60 2.03 40.39 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.46 -25.12 9.13 23.47 0.21 -24.90 16 8 H 0.10 4.83 7.86 -2.91 -0.02 4.81 16 9 C 0.24 13.69 6.54 40.21 0.26 13.95 16 10 C -0.30 -14.75 9.83 22.87 0.22 -14.53 16 11 C -0.04 -2.03 10.15 22.40 0.23 -1.80 16 12 C -0.32 -15.26 8.83 22.72 0.20 -15.06 16 13 C 0.34 17.39 7.50 133.28 1.00 18.39 16 14 N -0.62 -27.58 5.40 -309.72 -1.67 -29.25 16 15 C 0.51 19.61 7.73 87.24 0.67 20.29 16 16 O -0.51 -20.23 13.28 -3.29 -0.04 -20.27 16 17 C 0.52 16.92 7.88 87.24 0.69 17.61 16 18 O -0.53 -19.55 16.14 -3.26 -0.05 -19.60 16 19 N -0.68 -15.77 4.44 -440.51 -1.96 -17.72 16 20 C 0.10 1.73 3.01 45.72 0.14 1.87 16 21 H 0.12 2.27 7.53 -2.39 -0.02 2.25 16 22 C -0.12 -0.89 6.57 31.32 0.21 -0.69 16 23 C -0.12 -0.61 6.83 31.67 0.22 -0.40 16 24 C -0.15 -1.50 6.49 31.88 0.21 -1.30 16 25 C 0.24 4.97 2.40 31.67 0.08 5.05 16 26 F -0.21 -5.31 16.49 44.97 0.74 -4.57 16 27 F -0.21 -5.89 17.16 44.97 0.77 -5.12 16 28 N -0.53 -30.65 7.92 -186.43 -1.48 -32.12 16 29 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 30 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 31 H 0.14 5.14 8.06 -2.92 -0.02 5.12 16 32 H 0.14 6.34 5.34 -3.13 -0.02 6.33 16 33 H 0.42 18.58 8.31 -92.71 -0.77 17.81 16 34 H 0.43 8.50 7.79 -92.70 -0.72 7.78 16 35 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.10 0.61 7.62 -2.39 -0.02 0.59 16 37 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -73.81 351.14 3.04 -70.77 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.36 Total: 38.38 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 4.80 Total: 20.13 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.85 Total: -120.11 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.10 Total: -39.87 kcal Atomic # 9 Polarization: -11.21 SS G_CDS: 1.51 Total: -9.69 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -73.81 3.04 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890285035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.835 kcal (2) G-P(sol) polarization free energy of solvation -73.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds