Wall clock time and date at job start Tue Mar 31 2020 22:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47208 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47295 * 119.99991 * 3 2 1 6 6 H 1.48498 * 109.47125 * 240.00418 * 3 2 1 7 7 C 1.40024 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99906 * 4.82963 * 7 2 1 9 9 C 1.41345 * 120.00207 * 184.82553 * 7 2 1 10 10 C 1.40630 * 119.78627 * 185.11767 * 9 7 2 11 11 C 1.38307 * 119.13218 * 179.97438 * 10 9 7 12 12 C 1.38692 * 118.67031 * 0.02562 * 11 10 9 13 13 C 1.39667 * 119.49607 * 359.97438 * 12 11 10 14 14 N 1.39119 * 119.57638 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99738 * 18.71175 * 14 13 12 16 16 O 1.21356 * 119.99905 * 5.71191 * 15 14 13 17 17 C 1.49363 * 119.99673 * 185.70550 * 15 14 13 18 18 O 1.21363 * 120.00015 * 6.54377 * 17 15 14 19 19 N 1.34780 * 119.99928 * 186.53820 * 17 15 14 20 20 C 1.46924 * 120.63006 * 7.16594 * 19 17 15 21 21 C 1.53195 * 108.77213 * 126.37192 * 20 19 17 22 22 C 1.53032 * 109.31604 * 54.63523 * 21 20 19 23 23 C 1.53042 * 109.53844 * 298.63281 * 22 21 20 24 24 F 1.39900 * 109.49886 * 181.31262 * 23 22 21 25 25 F 1.39896 * 109.49777 * 301.41515 * 23 22 21 26 26 C 1.46927 * 120.62677 * 186.89070 * 19 17 15 27 27 N 1.31960 * 120.84132 * 359.72784 * 13 12 11 28 28 H 0.96997 * 119.99919 * 174.98948 * 1 2 3 29 29 H 1.07998 * 120.42976 * 359.97438 * 10 9 7 30 30 H 1.07998 * 120.65975 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.25048 * 179.97438 * 12 11 10 32 32 H 0.96991 * 120.00017 * 198.70268 * 14 13 12 33 33 H 1.09003 * 109.58813 * 246.15658 * 20 19 17 34 34 H 1.08997 * 109.58753 * 6.43863 * 20 19 17 35 35 H 1.08999 * 109.49346 * 174.58895 * 21 20 19 36 36 H 1.09000 * 109.49540 * 294.64929 * 21 20 19 37 37 H 1.08998 * 109.46351 * 58.65365 * 22 21 20 38 38 H 1.08995 * 109.46107 * 178.62813 * 22 21 20 39 39 H 1.08993 * 109.58974 * 353.41445 * 26 19 17 40 40 H 1.08997 * 109.58660 * 113.84355 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0950 1.6965 -1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 1.4705 -2.1462 -0.0797 9 6 3.4173 -1.2148 0.1024 10 6 4.1238 -2.4258 -0.0068 11 6 5.5030 -2.4122 0.0954 12 6 6.1429 -1.1995 0.3036 13 6 5.3853 -0.0304 0.4036 14 7 6.0254 1.1870 0.6118 15 6 7.3408 1.3110 0.3454 16 8 7.9440 0.3942 -0.1727 17 6 8.0560 2.5768 0.6877 18 8 7.4847 3.4470 1.3115 19 7 9.3360 2.7525 0.3038 20 6 9.9917 1.7815 -0.5827 21 6 10.5715 2.5279 -1.7884 22 6 11.4893 3.6492 -1.2961 23 6 10.6805 4.6413 -0.4571 24 9 11.5138 5.6818 -0.0325 25 9 9.6369 5.1634 -1.2288 26 6 10.1002 3.9219 0.7592 27 7 4.0704 -0.0652 0.2972 28 1 -0.4850 -0.8368 -0.0734 29 1 3.5963 -3.3542 -0.1685 30 1 6.0703 -3.3277 0.0148 31 1 7.2189 -1.1594 0.3877 32 1 5.5251 1.9467 0.9486 33 1 10.7946 1.2786 -0.0437 34 1 9.2625 1.0458 -0.9218 35 1 11.1430 1.8343 -2.4051 36 1 9.7593 2.9541 -2.3774 37 1 12.2871 3.2244 -0.6869 38 1 11.9222 4.1663 -2.1523 39 1 9.4420 4.5993 1.3031 40 1 10.9121 3.5970 1.4099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890355677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:20 Heat of formation + Delta-G solvation = -135.741953 kcal Electronic energy + Delta-G solvation = -29648.751335 eV Core-core repulsion = 25099.034727 eV Total energy + Delta-G solvation = -4549.716609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.08773 -48.10537 -42.53024 -40.92391 -39.63463 -38.52107 -36.47874 -35.45183 -33.86297 -33.04738 -31.81082 -31.49766 -28.08354 -27.27783 -25.67932 -24.47408 -23.72426 -23.23288 -21.91498 -21.16932 -20.29866 -19.42173 -18.58200 -18.41550 -18.05324 -17.92132 -17.46335 -17.07262 -16.96995 -16.87782 -16.23352 -15.79801 -15.60530 -15.44538 -15.03493 -14.95483 -14.75335 -14.62325 -14.45479 -14.40191 -14.27791 -13.90322 -13.74637 -13.63068 -13.31342 -13.19075 -12.81739 -12.40554 -12.31542 -12.24480 -12.09681 -11.87723 -11.72991 -11.63393 -11.19785 -10.49740 -10.30523 -10.10685 -9.78997 -9.32943 -9.27569 -6.84591 -0.19575 0.66799 0.77034 0.82619 1.55121 1.64019 1.83652 1.96524 2.09120 2.38302 2.61224 2.63283 2.86624 3.00800 3.30417 3.35691 3.52510 3.84734 4.00381 4.06202 4.14827 4.28833 4.32179 4.40894 4.51432 4.57625 4.61523 4.67612 4.71276 4.84486 5.00948 5.09873 5.19692 5.30003 5.33860 5.38534 5.58591 5.67839 5.76530 5.86868 6.05940 6.32398 6.38719 6.56936 6.65550 7.43947 7.93647 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.003130 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.267586 B = 8944.410554 C = 9875.567221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.018 3.982 3 Si 1.181 2.819 4 H -0.331 1.331 5 H -0.276 1.276 6 H -0.300 1.300 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.257 3.743 10 C -0.282 4.282 11 C -0.023 4.023 12 C -0.294 4.294 13 C 0.366 3.634 14 N -0.628 5.628 15 C 0.519 3.481 16 O -0.481 6.481 17 C 0.520 3.480 18 O -0.534 6.534 19 N -0.571 5.571 20 C 0.054 3.946 21 C -0.131 4.131 22 C -0.153 4.153 23 C 0.269 3.731 24 F -0.198 7.198 25 F -0.214 7.214 26 C 0.069 3.931 27 N -0.615 5.615 28 H 0.283 0.717 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.421 0.579 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.505 4.771 -1.200 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.199 4.199 3 Si 1.015 2.985 4 H -0.264 1.264 5 H -0.204 1.204 6 H -0.229 1.229 7 C -0.538 4.538 8 H 0.092 0.908 9 C 0.132 3.868 10 C -0.304 4.304 11 C -0.047 4.047 12 C -0.319 4.319 13 C 0.137 3.863 14 N -0.274 5.274 15 C 0.302 3.698 16 O -0.356 6.356 17 C 0.302 3.698 18 O -0.410 6.410 19 N -0.304 5.304 20 C -0.065 4.065 21 C -0.169 4.169 22 C -0.191 4.191 23 C 0.232 3.768 24 F -0.179 7.179 25 F -0.195 7.195 26 C -0.054 4.054 27 N -0.341 5.341 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.171 0.829 31 H 0.178 0.822 32 H 0.259 0.741 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 25.892 6.901 -1.100 26.819 hybrid contribution -0.637 -1.852 -0.016 1.959 sum 25.255 5.049 -1.116 25.779 Atomic orbital electron populations 1.70654 1.08452 1.32882 1.33164 1.28344 0.95593 1.07653 0.88317 0.81460 0.70090 0.68254 0.78671 1.26425 1.20379 1.22870 1.20743 0.91318 0.95986 1.45709 0.90811 1.18467 0.93390 0.87225 0.87712 1.21852 0.95257 0.97935 1.15332 1.21395 0.93291 0.97971 0.92034 1.21897 1.01851 0.90706 1.17416 1.18375 0.88559 0.85034 0.94370 1.43042 1.09387 1.13108 1.61878 1.20095 0.81805 0.88872 0.79029 1.90394 1.64917 1.40312 1.39989 1.19644 0.82881 0.86424 0.80821 1.90800 1.66217 1.43172 1.40858 1.47801 1.10130 1.24591 1.47882 1.23299 1.01195 0.91476 0.90531 1.21956 0.99417 0.97754 0.97767 1.22630 0.99078 0.95752 1.01642 1.21674 0.80432 0.83687 0.90985 1.93023 1.72180 1.61720 1.90968 1.93010 1.60500 1.88608 1.77430 1.22685 0.98953 0.88453 0.95273 1.65903 1.08401 1.29939 1.29886 0.90593 0.86272 0.82852 0.82177 0.74129 0.87280 0.84855 0.85829 0.92540 0.85367 0.88086 0.87985 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.20 13.65 21.84 0.30 -45.90 16 2 C 0.02 1.02 5.52 85.29 0.47 1.49 16 3 Si 1.18 58.55 25.61 68.60 1.76 60.30 16 4 H -0.33 -16.19 7.11 99.48 0.71 -15.48 16 5 H -0.28 -13.22 6.61 99.48 0.66 -12.56 16 6 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 7 C -0.50 -27.69 9.57 23.47 0.22 -27.47 16 8 H 0.07 4.06 8.05 -2.91 -0.02 4.04 16 9 C 0.26 13.14 6.40 40.22 0.26 13.40 16 10 C -0.28 -12.33 9.83 22.87 0.22 -12.11 16 11 C -0.02 -0.85 10.15 22.39 0.23 -0.62 16 12 C -0.29 -11.26 8.83 22.72 0.20 -11.06 16 13 C 0.37 15.68 7.51 133.28 1.00 16.68 16 14 N -0.63 -23.07 5.39 -309.72 -1.67 -24.74 16 15 C 0.52 15.81 7.59 87.24 0.66 16.47 16 16 O -0.48 -14.03 9.93 -3.26 -0.03 -14.06 16 17 C 0.52 14.07 7.74 87.24 0.68 14.75 16 18 O -0.53 -17.09 15.93 -3.29 -0.05 -17.14 16 19 N -0.57 -11.07 2.96 -821.40 -2.43 -13.50 16 20 C 0.05 0.77 6.03 86.36 0.52 1.29 16 21 C -0.13 -1.41 5.96 30.67 0.18 -1.22 16 22 C -0.15 -1.38 5.43 30.62 0.17 -1.21 16 23 C 0.27 4.29 2.14 30.53 0.07 4.36 16 24 F -0.20 -3.39 17.07 44.97 0.77 -2.62 16 25 F -0.21 -5.03 16.45 44.97 0.74 -4.29 16 26 C 0.07 1.09 5.89 86.22 0.51 1.60 16 27 N -0.62 -30.44 4.54 -186.43 -0.85 -31.28 16 28 H 0.28 15.16 8.72 -92.71 -0.81 14.36 16 29 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 30 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.16 5.45 5.32 -3.10 -0.02 5.44 16 32 H 0.42 15.37 8.34 -92.72 -0.77 14.59 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.13 2.54 4.21 -56.37 -0.24 2.31 16 35 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.88 7.74 -2.39 -0.02 0.87 16 37 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 2.01 7.00 -2.39 -0.02 1.99 16 40 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.46 337.12 3.95 -62.51 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.03 Total: 14.38 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 5.39 Total: 16.33 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.65 Total: -115.42 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.08 Total: -31.20 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 1.51 Total: -6.91 kcal Atomic # 14 Polarization: 58.55 SS G_CDS: 1.76 Total: 60.30 kcal Total: -66.46 3.95 -62.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890355677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.232 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds