Wall clock time and date at job start Tue Mar 31 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 119.99998 * 2 1 4 4 H 1.48500 * 109.46696 * 269.99629 * 3 2 1 5 5 H 1.48502 * 109.47326 * 29.99523 * 3 2 1 6 6 H 1.48497 * 109.47038 * 149.99725 * 3 2 1 7 7 C 1.40044 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00440 * 0.02562 * 7 2 1 10 10 O 1.21694 * 119.99658 * 354.90860 * 9 7 2 11 11 N 1.34780 * 120.00578 * 175.18311 * 9 7 2 12 12 C 1.46962 * 120.59392 * 184.50853 * 11 9 7 13 13 C 1.53817 * 108.39567 * 124.75769 * 12 11 9 14 14 N 1.46961 * 108.58172 * 49.63710 * 13 12 11 15 15 C 1.34767 * 120.59829 * 124.62273 * 14 13 12 16 16 O 1.21548 * 120.00327 * 185.47106 * 15 14 13 17 17 C 1.47845 * 119.99759 * 5.47256 * 15 14 13 18 18 C 1.40020 * 120.55933 * 54.76077 * 17 15 14 19 19 C 1.38355 * 118.29011 * 180.02562 * 18 17 15 20 20 C 1.38355 * 119.30209 * 359.97438 * 19 18 17 21 21 N 1.31922 * 121.07765 * 359.97438 * 20 19 18 22 22 C 1.31691 * 121.88452 * 359.73869 * 21 20 19 23 23 C 1.50698 * 119.72290 * 180.27117 * 22 21 20 24 24 F 1.39898 * 109.47070 * 120.26885 * 23 22 21 25 25 F 1.39902 * 109.47340 * 240.27165 * 23 22 21 26 26 C 1.46966 * 118.80654 * 304.64404 * 14 13 12 27 27 C 1.46958 * 120.58818 * 4.78634 * 11 9 7 28 28 H 0.97001 * 119.99706 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.60635 * 244.54015 * 12 11 9 30 30 H 1.08994 * 109.61293 * 5.04890 * 12 11 9 31 31 H 1.09002 * 109.73940 * 289.84282 * 13 12 11 32 32 H 1.09004 * 109.52905 * 169.30262 * 13 12 11 33 33 H 1.08002 * 120.85781 * 359.97438 * 18 17 15 34 34 H 1.08002 * 120.35401 * 179.97438 * 19 18 17 35 35 H 1.08004 * 119.45768 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.47059 * 0.27389 * 23 22 21 37 37 H 1.08991 * 109.61431 * 295.48039 * 26 14 13 38 38 H 1.09012 * 109.60792 * 174.96851 * 26 14 13 39 39 H 1.09004 * 109.61587 * 354.94755 * 27 11 9 40 40 H 1.09002 * 109.61182 * 115.46243 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6528 0.6999 6 1 3.5382 1.4402 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0617 -2.4825 0.0936 11 7 1.9454 -3.6457 -0.0969 12 6 1.2199 -4.9198 -0.1975 13 6 1.6989 -5.6527 -1.4621 14 7 3.1684 -5.6724 -1.4637 15 6 3.8387 -6.8375 -1.5603 16 8 5.0501 -6.8519 -1.4607 17 6 3.1007 -8.0983 -1.7874 18 6 2.2268 -8.2258 -2.8739 19 6 1.5598 -9.4263 -3.0416 20 6 1.7759 -10.4527 -2.1394 21 7 2.6063 -10.3043 -1.1251 22 6 3.2683 -9.1833 -0.9264 23 6 4.2094 -9.0690 0.2450 24 9 5.5013 -8.7997 -0.2193 25 9 3.7885 -8.0298 1.0818 26 6 3.8938 -4.3986 -1.3576 27 6 3.4149 -3.6653 -0.0985 28 1 -0.4850 0.8401 -0.0004 29 1 1.4271 -5.5290 0.6823 30 1 0.1495 -4.7267 -0.2680 31 1 1.3390 -5.1306 -2.3487 32 1 1.3194 -6.6745 -1.4569 33 1 2.0765 -7.4078 -3.5629 34 1 0.8776 -9.5609 -3.8680 35 1 1.2562 -11.3908 -2.2676 36 1 4.2116 -10.0059 0.8021 37 1 3.6903 -3.7874 -2.2367 38 1 4.9640 -4.5922 -1.2833 39 1 3.7944 -2.6434 -0.1037 40 1 3.7748 -4.1873 0.7881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896990900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:18 Heat of formation + Delta-G solvation = -133.449637 kcal Electronic energy + Delta-G solvation = -30298.202073 eV Core-core repulsion = 25748.584867 eV Total energy + Delta-G solvation = -4549.617206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.07084 -48.06354 -42.00492 -40.67590 -39.57607 -37.57117 -35.01766 -34.66819 -33.87255 -33.32568 -32.28572 -29.36230 -28.11465 -27.68878 -25.71589 -24.83157 -23.75572 -23.31845 -21.76112 -20.38153 -19.05147 -18.79717 -18.70716 -18.31319 -18.11304 -17.67063 -17.28486 -16.92411 -16.37445 -16.33716 -16.15859 -15.88482 -15.67825 -15.38993 -15.15883 -14.80840 -14.55880 -14.44179 -14.42573 -14.26278 -14.12029 -13.66233 -13.47699 -13.38771 -13.18421 -12.91889 -12.75026 -12.51418 -12.41950 -12.27205 -12.03272 -12.01078 -11.31967 -11.03957 -10.93204 -10.73334 -10.40740 -10.16314 -9.80962 -9.06275 -8.30310 -6.84944 -0.50928 -0.08037 1.37618 1.41205 1.42470 1.57079 1.73787 2.23593 2.24048 2.43744 2.45379 2.74802 3.08628 3.11136 3.29137 3.56668 3.73785 3.80483 3.86750 3.90019 3.90707 3.99541 4.09311 4.18187 4.21699 4.32792 4.39649 4.50259 4.61835 4.68674 4.80241 4.81194 4.93239 4.99308 5.26799 5.39131 5.41361 5.67123 6.09001 6.13991 6.33762 6.55960 6.86932 6.87782 7.34564 8.43132 8.65198 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.003201 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.683033 B = 8745.444723 C = 9302.069823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.992 3.008 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.544 3.456 10 O -0.627 6.627 11 N -0.643 5.643 12 C 0.106 3.894 13 C 0.108 3.892 14 N -0.595 5.595 15 C 0.554 3.446 16 O -0.549 6.549 17 C -0.159 4.159 18 C -0.051 4.051 19 C -0.133 4.133 20 C 0.118 3.882 21 N -0.472 5.472 22 C 0.074 3.926 23 C 0.308 3.692 24 F -0.192 7.192 25 F -0.207 7.207 26 C 0.106 3.894 27 C 0.111 3.889 28 H 0.274 0.726 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.163 0.837 34 H 0.194 0.806 35 H 0.210 0.790 36 H 0.161 0.839 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -20.013 -7.657 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.604 4.604 8 H 0.112 0.888 9 C 0.351 3.649 10 O -0.514 6.514 11 N -0.380 5.380 12 C -0.019 4.019 13 C -0.015 4.015 14 N -0.327 5.327 15 C 0.341 3.659 16 O -0.427 6.427 17 C -0.165 4.165 18 C -0.077 4.077 19 C -0.152 4.152 20 C -0.039 4.039 21 N -0.181 5.181 22 C -0.065 4.065 23 C 0.254 3.746 24 F -0.173 7.173 25 F -0.189 7.189 26 C -0.017 4.017 27 C -0.014 4.014 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.180 0.820 34 H 0.211 0.789 35 H 0.227 0.773 36 H 0.178 0.822 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.642 -20.577 -6.946 22.209 hybrid contribution 0.104 1.723 -0.203 1.738 sum 4.747 -18.854 -7.150 20.716 Atomic orbital electron populations 1.70171 1.09438 1.28930 1.36351 1.26916 0.95452 1.04734 0.91195 0.85091 0.78833 0.75402 0.79486 1.18433 1.20088 1.17324 1.21478 0.94812 0.89683 1.54403 0.88784 1.18624 0.86548 0.83870 0.75852 1.90547 1.16398 1.87190 1.57278 1.48015 1.05983 1.05425 1.78601 1.21670 0.97910 0.85444 0.96863 1.22305 0.78531 1.02124 0.98557 1.48001 1.07554 1.06028 1.71141 1.18482 0.86974 0.83724 0.76673 1.90835 1.14420 1.86499 1.50982 1.20723 1.01026 0.94751 0.99977 1.22123 0.91091 1.00128 0.94372 1.22751 0.99322 0.91751 1.01331 1.23768 0.91779 1.00903 0.87481 1.67327 1.07083 1.21722 1.21968 1.21536 0.97906 0.90509 0.96576 1.20569 0.76830 0.90465 0.86719 1.93089 1.39207 1.95190 1.89797 1.93022 1.90211 1.63028 1.72605 1.22054 0.97735 0.83218 0.98732 1.21898 0.80763 1.02168 0.96526 0.91581 0.93212 0.90489 0.89909 0.87420 0.81951 0.78917 0.77310 0.82210 0.90081 0.88084 0.87823 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.88 11.84 21.83 0.26 -48.63 16 2 C 0.03 1.76 5.50 85.30 0.47 2.23 16 3 Si 0.99 39.88 29.56 68.60 2.03 41.90 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 7 C -0.57 -31.00 8.88 24.83 0.22 -30.78 16 8 H 0.09 4.57 5.63 -2.91 -0.02 4.56 16 9 C 0.54 30.71 7.62 86.36 0.66 31.37 16 10 O -0.63 -40.77 14.46 -4.33 -0.06 -40.83 16 11 N -0.64 -28.78 2.94 -822.23 -2.42 -31.19 16 12 C 0.11 4.01 6.61 86.57 0.57 4.58 16 13 C 0.11 3.08 5.87 86.57 0.51 3.58 16 14 N -0.60 -18.06 2.95 -820.55 -2.42 -20.48 16 15 C 0.55 17.05 6.00 86.79 0.52 17.57 16 16 O -0.55 -20.35 13.73 -3.87 -0.05 -20.40 16 17 C -0.16 -3.86 4.57 -19.99 -0.09 -3.95 16 18 C -0.05 -0.81 7.93 22.73 0.18 -0.63 16 19 C -0.13 -1.20 10.10 22.33 0.23 -0.97 16 20 C 0.12 1.28 11.17 84.71 0.95 2.23 16 21 N -0.47 -8.88 10.24 -182.84 -1.87 -10.75 16 22 C 0.07 1.76 6.31 42.89 0.27 2.03 16 23 C 0.31 7.89 5.10 71.24 0.36 8.25 16 24 F -0.19 -5.99 14.63 44.97 0.66 -5.34 16 25 F -0.21 -6.36 16.54 44.97 0.74 -5.62 16 26 C 0.11 3.37 6.60 86.42 0.57 3.94 16 27 C 0.11 4.13 6.50 86.42 0.56 4.69 16 28 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 3.24 7.02 -2.39 -0.02 3.23 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.11 2.45 5.32 -2.39 -0.01 2.44 16 33 H 0.16 2.05 7.85 -2.91 -0.02 2.03 16 34 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.21 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.16 2.87 8.11 -2.39 -0.02 2.85 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.10 3.14 6.99 -2.38 -0.02 3.13 16 39 H 0.10 3.91 5.29 -2.39 -0.01 3.90 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -83.99 340.15 3.95 -80.04 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.11 Total: 17.16 kcal Atomic # 6 Polarization: 38.16 SS G_CDS: 5.98 Total: 44.14 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -6.45 Total: -111.05 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -0.12 Total: -61.24 kcal Atomic # 9 Polarization: -12.35 SS G_CDS: 1.40 Total: -10.95 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -83.99 3.95 -80.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896990900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.411 kcal (2) G-P(sol) polarization free energy of solvation -83.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds