Wall clock time and date at job start Tue Mar 31 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00094 * 2 1 4 4 C 1.52990 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47286 * 65.00100 * 4 3 2 6 6 C 1.37097 * 119.99876 * 270.00325 * 5 4 3 7 7 H 1.07992 * 120.00059 * 145.27766 * 6 5 4 8 8 C 1.38947 * 119.99760 * 325.27495 * 6 5 4 9 9 N 1.31414 * 120.00435 * 337.27216 * 8 6 5 10 10 Si 1.86805 * 119.99791 * 157.27514 * 8 6 5 11 11 H 1.48504 * 109.47127 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47243 * 120.00057 * 10 8 6 13 13 H 1.48504 * 109.47216 * 239.99894 * 10 8 6 14 14 C 1.34770 * 119.99582 * 89.99893 * 5 4 3 15 15 O 1.21290 * 120.00655 * 4.88541 * 14 5 4 16 16 C 1.50703 * 119.99686 * 184.88496 * 14 5 4 17 17 C 1.50697 * 109.47162 * 179.36847 * 16 14 5 18 18 C 1.33979 * 126.90156 * 265.02109 * 17 16 14 19 19 O 1.34455 * 110.15255 * 179.97438 * 18 17 16 20 20 C 1.34872 * 110.88700 * 359.97438 * 19 18 17 21 21 C 1.40460 * 107.27147 * 0.02562 * 20 19 18 22 22 C 1.39423 * 120.20804 * 179.97438 * 21 20 19 23 23 C 1.37749 * 119.67147 * 359.97438 * 22 21 20 24 24 C 1.38893 * 120.26764 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.69036 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.61553 * 0.02562 * 24 23 22 27 27 F 1.35096 * 120.04979 * 179.97438 * 26 24 23 28 28 H 1.08999 * 109.46813 * 299.99272 * 1 2 3 29 29 H 1.08997 * 109.47522 * 59.99986 * 1 2 3 30 30 H 1.09003 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46915 * 60.00323 * 3 2 1 32 32 H 1.09003 * 109.47023 * 300.00556 * 3 2 1 33 33 H 1.09008 * 109.47233 * 305.00414 * 4 3 2 34 34 H 1.08999 * 109.47749 * 185.00171 * 4 3 2 35 35 H 0.96997 * 120.00263 * 184.84511 * 9 8 6 36 36 H 1.09000 * 109.47447 * 59.36398 * 16 14 5 37 37 H 1.09005 * 109.46762 * 299.36758 * 16 14 5 38 38 H 1.08006 * 124.92007 * 359.71409 * 18 17 16 39 39 H 1.07992 * 120.16744 * 180.02562 * 22 21 20 40 40 H 1.07992 * 119.86262 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0969 -0.7985 -1.3371 7 1 3.8655 -1.3050 -2.2624 8 6 4.5176 -1.5282 -0.2320 9 7 5.2106 -0.9414 0.7179 10 14 4.0980 -3.3434 -0.0965 11 1 3.3152 -3.7608 -1.2875 12 1 5.3510 -4.1371 -0.0240 13 1 3.2935 -3.5754 1.1300 14 6 4.2615 1.3339 -2.3218 15 8 4.2401 2.5425 -2.2223 16 6 4.6076 0.6925 -3.6408 17 6 4.8673 1.7643 -4.6678 18 6 3.9897 2.2647 -5.5479 19 8 4.5790 3.2068 -6.3049 20 6 5.8713 3.3668 -5.9539 21 6 6.1324 2.4707 -4.9043 22 6 7.4024 2.4116 -4.3320 23 6 8.4009 3.2362 -4.8013 24 6 8.1461 4.1235 -5.8391 25 9 9.1339 4.9273 -6.2900 26 6 6.8910 4.1925 -6.4142 27 9 6.6556 5.0600 -7.4226 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 5.5643 -1.4646 1.4541 36 1 3.7775 0.0674 -3.9699 37 1 5.5004 0.0782 -3.5229 38 1 2.9596 1.9532 -5.6391 39 1 7.6025 1.7221 -3.5253 40 1 9.3856 3.1933 -4.3600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909561824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:57 Heat of formation + Delta-G solvation = -127.090538 kcal Electronic energy + Delta-G solvation = -29352.814828 eV Core-core repulsion = 24771.180621 eV Total energy + Delta-G solvation = -4581.634206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.48950 -48.54196 -42.40258 -38.71755 -37.56008 -37.01793 -34.80288 -33.41856 -31.61773 -30.35006 -29.96252 -29.11788 -27.24680 -25.81043 -24.67059 -23.59755 -22.68875 -22.15442 -20.29561 -19.10163 -18.03985 -17.83649 -17.47422 -16.83619 -16.57188 -16.23217 -15.80040 -15.59708 -15.42881 -15.33054 -15.08554 -14.87323 -14.58689 -14.41496 -14.38079 -14.15418 -13.77169 -13.62805 -12.80600 -12.61980 -12.26141 -12.11921 -11.95034 -11.78210 -11.70989 -11.57593 -11.21498 -11.18614 -11.02697 -10.80675 -10.70712 -10.36378 -10.09203 -9.69660 -9.20361 -9.02046 -8.73491 -8.52599 -7.95852 -7.53791 -6.37757 -4.01586 0.63364 1.05571 2.35091 2.55691 3.12467 3.25350 3.27746 3.40691 3.80578 3.83223 4.12792 4.28577 4.46755 4.48347 4.55343 4.73223 4.90648 4.98549 5.05819 5.37142 5.52450 5.61671 5.62460 5.67535 5.71234 5.90653 5.94427 5.99911 6.01443 6.11695 6.20418 6.24887 6.27450 6.34175 6.50410 6.57240 6.73412 7.10421 7.24680 7.46785 7.76860 7.95702 8.33347 9.08384 9.47122 9.88672 10.65020 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.003159 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.087351 B = 8862.486193 C = 9607.192285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.427 5.427 6 C -0.329 4.329 7 H 0.088 0.912 8 C 0.054 3.946 9 N -0.862 5.862 10 Si 0.916 3.084 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.280 1.280 14 C 0.467 3.533 15 O -0.604 6.604 16 C -0.056 4.056 17 C -0.124 4.124 18 C 0.007 3.993 19 O -0.183 6.183 20 C 0.041 3.959 21 C -0.089 4.089 22 C -0.035 4.035 23 C -0.148 4.148 24 C 0.088 3.912 25 F -0.125 7.125 26 C 0.072 3.928 27 F -0.127 7.127 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.269 0.731 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.212 0.788 39 H 0.149 0.851 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 2.539 -7.620 8.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.145 5.145 6 C -0.457 4.457 7 H 0.106 0.894 8 C -0.152 4.152 9 N -0.499 5.499 10 Si 0.743 3.257 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.206 1.206 14 C 0.255 3.745 15 O -0.490 6.490 16 C -0.096 4.096 17 C -0.126 4.126 18 C -0.057 4.057 19 O -0.084 6.084 20 C -0.008 4.008 21 C -0.090 4.090 22 C -0.053 4.053 23 C -0.166 4.166 24 C 0.068 3.932 25 F -0.104 7.104 26 C 0.051 3.949 27 F -0.106 7.106 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.228 0.772 39 H 0.167 0.833 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.311 3.126 -7.594 8.218 hybrid contribution -0.473 -0.486 0.093 0.685 sum -0.784 2.640 -7.501 7.990 Atomic orbital electron populations 1.22649 0.83546 1.01721 0.98798 1.88158 1.17229 1.27609 1.95004 1.23018 0.96546 0.84338 0.98418 1.21531 0.89239 0.99286 0.91474 1.43330 1.55868 1.06283 1.09013 1.19308 1.45970 0.80527 0.99855 0.89391 1.25200 0.94228 0.99827 0.95960 1.69820 1.30469 1.36871 1.12750 0.86074 0.78183 0.82707 0.78759 1.19290 1.21190 1.20559 1.20174 0.81060 0.86796 0.86442 1.90552 1.58273 1.14523 1.85655 1.19848 1.04076 0.94639 0.90994 1.20819 0.91052 1.01261 0.99425 1.23782 0.98528 0.90299 0.93089 1.84042 1.19911 1.50951 1.53496 1.19002 0.84465 0.99250 0.98115 1.19706 0.95342 0.97547 0.96452 1.20562 0.89644 0.97295 0.97807 1.20874 1.01616 0.97017 0.97138 1.17048 0.83471 0.94910 0.97807 1.91522 1.59227 1.71318 1.88313 1.16095 0.91314 0.94765 0.92728 1.91506 1.94784 1.67143 1.57154 0.95206 0.95024 0.90449 0.94330 0.94466 0.86440 0.91027 0.92056 0.88818 0.87989 0.77190 0.83313 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -7.35 10.18 -35.23 -0.36 -7.71 16 3 C 0.05 1.08 6.28 37.15 0.23 1.32 16 4 C 0.11 2.47 5.47 -4.04 -0.02 2.45 16 5 N -0.43 -9.97 2.52 -114.81 -0.29 -10.26 16 6 C -0.33 -7.75 8.20 -14.93 -0.12 -7.88 16 7 H 0.09 1.97 7.00 -52.49 -0.37 1.60 16 8 C 0.05 1.29 4.95 -17.47 -0.09 1.20 16 9 N -0.86 -21.74 11.34 55.50 0.63 -21.11 16 10 Si 0.92 19.09 29.61 -169.99 -5.03 14.05 16 11 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.47 10.36 7.62 -10.99 -0.08 10.28 16 15 O -0.60 -14.87 15.59 5.55 0.09 -14.78 16 16 C -0.06 -0.99 4.86 -29.03 -0.14 -1.13 16 17 C -0.12 -2.06 4.85 -102.65 -0.50 -2.56 16 18 C 0.01 0.11 11.89 29.23 0.35 0.45 16 19 O -0.18 -2.94 10.58 3.71 0.04 -2.90 16 20 C 0.04 0.67 7.39 -38.45 -0.28 0.38 16 21 C -0.09 -1.47 6.38 -105.15 -0.67 -2.14 16 22 C -0.03 -0.51 10.10 -39.32 -0.40 -0.90 16 23 C -0.15 -1.88 10.00 -39.52 -0.40 -2.28 16 24 C 0.09 1.24 7.29 -39.34 -0.29 0.95 16 25 F -0.13 -1.73 17.16 2.25 0.04 -1.69 16 26 C 0.07 1.12 7.32 -39.29 -0.29 0.83 16 27 F -0.13 -2.01 17.17 2.25 0.04 -1.97 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 2.90 5.36 -51.92 -0.28 2.62 16 34 H 0.07 1.65 7.36 -51.93 -0.38 1.27 16 35 H 0.27 6.45 8.32 -40.82 -0.34 6.11 16 36 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 37 H 0.10 1.76 8.05 -51.93 -0.42 1.34 16 38 H 0.21 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -29.46 357.81 -5.41 -34.86 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.37 Total: 3.58 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.58 Total: 2.54 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.34 Total: -31.38 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.23 Total: -25.39 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.46 -5.41 -34.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.226 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds