Wall clock time and date at job start Tue Mar 31 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00094 * 2 1 4 4 C 1.52990 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47286 * 65.00100 * 4 3 2 6 6 C 1.37097 * 119.99876 * 270.00325 * 5 4 3 7 7 H 1.07992 * 120.00059 * 145.27766 * 6 5 4 8 8 C 1.38947 * 119.99760 * 325.27495 * 6 5 4 9 9 N 1.31414 * 120.00435 * 337.27216 * 8 6 5 10 10 Si 1.86805 * 119.99791 * 157.27514 * 8 6 5 11 11 H 1.48504 * 109.47127 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47243 * 120.00057 * 10 8 6 13 13 H 1.48504 * 109.47216 * 239.99894 * 10 8 6 14 14 C 1.34770 * 119.99582 * 89.99893 * 5 4 3 15 15 O 1.21290 * 120.00655 * 4.88541 * 14 5 4 16 16 C 1.50703 * 119.99686 * 184.88496 * 14 5 4 17 17 C 1.50697 * 109.47162 * 179.36847 * 16 14 5 18 18 C 1.33979 * 126.90156 * 265.02109 * 17 16 14 19 19 O 1.34455 * 110.15255 * 179.97438 * 18 17 16 20 20 C 1.34872 * 110.88700 * 359.97438 * 19 18 17 21 21 C 1.40460 * 107.27147 * 0.02562 * 20 19 18 22 22 C 1.39423 * 120.20804 * 179.97438 * 21 20 19 23 23 C 1.37749 * 119.67147 * 359.97438 * 22 21 20 24 24 C 1.38893 * 120.26764 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.69036 * 179.97438 * 24 23 22 26 26 C 1.38234 * 120.61553 * 0.02562 * 24 23 22 27 27 F 1.35096 * 120.04979 * 179.97438 * 26 24 23 28 28 H 1.08999 * 109.46813 * 299.99272 * 1 2 3 29 29 H 1.08997 * 109.47522 * 59.99986 * 1 2 3 30 30 H 1.09003 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46915 * 60.00323 * 3 2 1 32 32 H 1.09003 * 109.47023 * 300.00556 * 3 2 1 33 33 H 1.09008 * 109.47233 * 305.00414 * 4 3 2 34 34 H 1.08999 * 109.47749 * 185.00171 * 4 3 2 35 35 H 0.96997 * 120.00263 * 184.84511 * 9 8 6 36 36 H 1.09000 * 109.47447 * 59.36398 * 16 14 5 37 37 H 1.09005 * 109.46762 * 299.36758 * 16 14 5 38 38 H 1.08006 * 124.92007 * 359.71409 * 18 17 16 39 39 H 1.07992 * 120.16744 * 180.02562 * 22 21 20 40 40 H 1.07992 * 119.86262 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.0969 -0.7985 -1.3371 7 1 3.8655 -1.3050 -2.2624 8 6 4.5176 -1.5282 -0.2320 9 7 5.2106 -0.9414 0.7179 10 14 4.0980 -3.3434 -0.0965 11 1 3.3152 -3.7608 -1.2875 12 1 5.3510 -4.1371 -0.0240 13 1 3.2935 -3.5754 1.1300 14 6 4.2615 1.3339 -2.3218 15 8 4.2401 2.5425 -2.2223 16 6 4.6076 0.6925 -3.6408 17 6 4.8673 1.7643 -4.6678 18 6 3.9897 2.2647 -5.5479 19 8 4.5790 3.2068 -6.3049 20 6 5.8713 3.3668 -5.9539 21 6 6.1324 2.4707 -4.9043 22 6 7.4024 2.4116 -4.3320 23 6 8.4009 3.2362 -4.8013 24 6 8.1461 4.1235 -5.8391 25 9 9.1339 4.9273 -6.2900 26 6 6.8910 4.1925 -6.4142 27 9 6.6556 5.0600 -7.4226 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 5.5643 -1.4646 1.4541 36 1 3.7775 0.0674 -3.9699 37 1 5.5004 0.0782 -3.5229 38 1 2.9596 1.9532 -5.6391 39 1 7.6025 1.7221 -3.5253 40 1 9.3856 3.1933 -4.3600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909561824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:57 Heat of formation + Delta-G solvation = -142.998829 kcal Electronic energy + Delta-G solvation = -29353.504663 eV Core-core repulsion = 24771.180621 eV Total energy + Delta-G solvation = -4582.324041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.65219 -49.71032 -43.59455 -40.43446 -38.70506 -38.52088 -36.54071 -34.75256 -33.42672 -31.54583 -31.39279 -30.42131 -28.60146 -27.21766 -26.37645 -24.75869 -23.84149 -23.73752 -21.63997 -20.79054 -19.22501 -19.13916 -18.70625 -18.22537 -17.95872 -17.76577 -17.10115 -16.94283 -16.90893 -16.71215 -16.21767 -16.14937 -16.04662 -15.97578 -15.78070 -15.51973 -15.19732 -14.89922 -14.39216 -13.85325 -13.60892 -13.55556 -13.39778 -13.19165 -12.93871 -12.86089 -12.82816 -12.72081 -12.47374 -12.40037 -12.24427 -11.99461 -11.73735 -11.04108 -10.89555 -10.48954 -10.24189 -9.88346 -9.37319 -9.14869 -8.18290 -5.86184 -0.52807 -0.08809 1.14474 1.40786 1.47208 1.57238 1.66104 2.09810 2.23444 2.42624 2.67165 3.02416 3.08518 3.14705 3.30292 3.35298 3.44796 3.70575 3.87567 4.18170 4.26607 4.29681 4.32461 4.50852 4.54633 4.57219 4.62605 4.65593 4.68272 4.80193 4.83723 4.90455 4.93256 4.96596 5.10940 5.33414 5.41760 5.43188 5.65375 5.91002 6.09216 6.45649 6.52167 7.27447 7.71225 8.12284 8.85370 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.003159 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.087351 B = 8862.486193 C = 9607.192285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.066 3.934 4 C 0.106 3.894 5 N -0.439 5.439 6 C -0.332 4.332 7 H 0.100 0.900 8 C 0.015 3.985 9 N -0.895 5.895 10 Si 0.973 3.027 11 H -0.257 1.257 12 H -0.284 1.284 13 H -0.289 1.289 14 C 0.459 3.541 15 O -0.633 6.633 16 C -0.042 4.042 17 C -0.155 4.155 18 C 0.024 3.976 19 O -0.190 6.190 20 C 0.021 3.979 21 C -0.105 4.105 22 C -0.046 4.046 23 C -0.128 4.128 24 C 0.090 3.910 25 F -0.122 7.122 26 C 0.060 3.940 27 F -0.132 7.132 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.268 0.732 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.155 0.845 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 1.671 -8.345 8.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.018 4.018 5 N -0.157 5.157 6 C -0.459 4.459 7 H 0.118 0.882 8 C -0.188 4.188 9 N -0.534 5.534 10 Si 0.798 3.202 11 H -0.180 1.180 12 H -0.210 1.210 13 H -0.216 1.216 14 C 0.249 3.751 15 O -0.521 6.521 16 C -0.081 4.081 17 C -0.157 4.157 18 C -0.040 4.040 19 O -0.092 6.092 20 C -0.027 4.027 21 C -0.106 4.106 22 C -0.064 4.064 23 C -0.147 4.147 24 C 0.070 3.930 25 F -0.101 7.101 26 C 0.039 3.961 27 F -0.111 7.111 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.264 0.736 39 H 0.172 0.828 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.913 2.254 -8.338 8.685 hybrid contribution -0.291 -0.144 0.321 0.457 sum -1.204 2.110 -8.017 8.377 Atomic orbital electron populations 1.22883 0.80865 1.03259 1.00204 1.88087 1.20191 1.27589 1.95267 1.22787 0.94480 0.84665 0.99205 1.21432 0.91483 0.97847 0.91046 1.43544 1.56211 1.06536 1.09368 1.19602 1.45323 0.80713 1.00298 0.88204 1.25878 0.94058 1.03129 0.95722 1.69925 1.31813 1.38164 1.13460 0.85192 0.77777 0.78711 0.78495 1.18039 1.21027 1.21551 1.20921 0.79984 0.86532 0.87615 1.90523 1.59314 1.15905 1.86360 1.19699 1.04771 0.94863 0.88773 1.20822 0.91949 1.02392 1.00502 1.24474 0.99469 0.88550 0.91460 1.84045 1.19972 1.51309 1.53843 1.19156 0.84810 0.99988 0.98770 1.19981 0.96140 0.97740 0.96755 1.20749 0.89520 0.98008 0.98150 1.21183 1.02557 0.95136 0.95783 1.17146 0.83026 0.95007 0.97866 1.91533 1.58954 1.71268 1.88311 1.16306 0.91871 0.94927 0.92989 1.91486 1.94893 1.67306 1.57415 0.93419 0.93925 0.88912 0.92157 0.94876 0.88502 0.92578 0.92203 0.86711 0.87845 0.73577 0.82781 0.79709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 16 2 O -0.39 -15.47 10.18 -148.98 -1.52 -16.98 16 3 C 0.07 2.60 6.28 71.98 0.45 3.05 16 4 C 0.11 4.91 5.47 86.37 0.47 5.38 16 5 N -0.44 -20.50 2.52 -635.55 -1.60 -22.10 16 6 C -0.33 -15.41 8.20 84.04 0.69 -14.72 16 7 H 0.10 4.30 7.00 -2.91 -0.02 4.28 16 8 C 0.01 0.70 4.95 84.93 0.42 1.12 16 9 N -0.90 -45.69 11.34 21.66 0.25 -45.44 16 10 Si 0.97 38.51 29.61 68.60 2.03 40.54 16 11 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 12 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 13 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 14 C 0.46 20.31 7.62 87.66 0.67 20.98 16 15 O -0.63 -31.40 15.59 -3.06 -0.05 -31.45 16 16 C -0.04 -1.43 4.86 29.10 0.14 -1.29 16 17 C -0.15 -5.01 4.85 -18.59 -0.09 -5.10 16 18 C 0.02 0.68 11.89 66.85 0.79 1.47 16 19 O -0.19 -5.96 10.58 -9.63 -0.10 -6.07 16 20 C 0.02 0.69 7.39 23.00 0.17 0.86 16 21 C -0.10 -3.41 6.38 -20.21 -0.13 -3.54 16 22 C -0.05 -1.30 10.10 22.44 0.23 -1.07 16 23 C -0.13 -3.04 10.00 22.31 0.22 -2.82 16 24 C 0.09 2.42 7.29 22.43 0.16 2.58 16 25 F -0.12 -3.18 17.16 44.97 0.77 -2.41 16 26 C 0.06 1.83 7.32 22.46 0.16 1.99 16 27 F -0.13 -4.14 17.17 44.97 0.77 -3.37 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 4.91 5.36 -2.38 -0.01 4.90 16 34 H 0.06 2.69 7.36 -2.39 -0.02 2.67 16 35 H 0.27 13.06 8.32 -92.71 -0.77 12.28 16 36 H 0.11 3.39 7.76 -2.39 -0.02 3.37 16 37 H 0.10 3.49 8.05 -2.38 -0.02 3.47 16 38 H 0.25 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -63.57 357.81 7.26 -56.30 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.09 Total: 20.15 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.62 Total: 10.83 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -1.36 Total: -67.54 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -1.67 Total: -54.50 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.54 Total: -5.78 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -63.57 7.26 -56.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.694 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds