Wall clock time and date at job start Tue Mar 31 2020 22:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99770 * 2 1 4 4 H 1.48498 * 109.47164 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46947 * 119.99900 * 3 2 1 6 6 H 1.48500 * 109.46796 * 239.99313 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99847 * 152.70019 * 7 2 1 9 9 C 1.50704 * 119.99817 * 332.70164 * 7 2 1 10 10 H 1.08997 * 109.47168 * 54.13788 * 9 7 2 11 11 N 1.46501 * 109.46947 * 174.14543 * 9 7 2 12 12 C 1.34771 * 119.99827 * 205.00082 * 11 9 7 13 13 O 1.21591 * 119.99963 * 5.33750 * 12 11 9 14 14 N 1.34772 * 120.00058 * 185.34303 * 12 11 9 15 15 C 1.46962 * 120.59488 * 5.06552 * 14 12 11 16 16 C 1.53809 * 108.39719 * 124.76032 * 15 14 12 17 17 N 1.46968 * 108.58115 * 49.63955 * 16 15 14 18 18 C 1.34777 * 120.59355 * 124.62386 * 17 16 15 19 19 O 1.21284 * 119.99825 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00137 * 0.02562 * 18 17 16 21 21 O 1.42904 * 109.46903 * 180.02562 * 20 18 17 22 22 C 1.46969 * 118.81258 * 304.64946 * 17 16 15 23 23 C 1.46973 * 120.59325 * 185.35095 * 14 12 11 24 24 C 1.53004 * 109.46851 * 294.14042 * 9 7 2 25 25 F 1.39901 * 109.46867 * 56.93708 * 24 9 7 26 26 F 1.39894 * 109.46918 * 176.93706 * 24 9 7 27 27 F 1.39904 * 109.47218 * 296.93880 * 24 9 7 28 28 H 0.96996 * 120.00060 * 174.48161 * 1 2 3 29 29 H 0.97003 * 119.99972 * 24.99414 * 11 9 7 30 30 H 1.09002 * 109.61127 * 244.54157 * 15 14 12 31 31 H 1.09000 * 109.61044 * 5.05585 * 15 14 12 32 32 H 1.09006 * 109.74671 * 289.85258 * 16 15 14 33 33 H 1.09004 * 109.53291 * 169.30364 * 16 15 14 34 34 H 1.08994 * 109.47236 * 300.00259 * 20 18 17 35 35 H 1.08998 * 109.46848 * 60.00516 * 20 18 17 36 36 H 0.96703 * 113.99352 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.60509 * 295.47814 * 22 17 16 38 38 H 1.08996 * 109.60965 * 174.96772 * 22 17 16 39 39 H 1.08996 * 109.61225 * 354.94543 * 23 14 12 40 40 H 1.09006 * 109.60782 * 115.28867 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 2.9942 -1.2463 -0.4284 9 6 1.3769 -2.4262 0.5997 10 1 0.4024 -2.5968 0.1420 11 7 2.2412 -3.5832 0.3539 12 6 1.7148 -4.8236 0.3251 13 8 0.5111 -4.9752 0.4060 14 7 2.5226 -5.8959 0.2068 15 6 3.9835 -5.7368 0.2195 16 6 4.5601 -6.6355 1.3266 17 7 3.9957 -7.9841 1.1763 18 6 4.8036 -9.0564 1.0570 19 8 4.3263 -10.1644 0.9331 20 6 6.2999 -8.8785 1.0776 21 8 6.9329 -10.1517 0.9352 22 6 2.5347 -8.1426 1.1579 23 6 1.9582 -7.2445 0.0564 24 6 1.2048 -2.2293 2.1072 25 9 0.4372 -1.0838 2.3432 26 9 0.5589 -3.3440 2.6523 27 9 2.4612 -2.0799 2.7044 28 1 -0.4850 -0.8361 -0.0808 29 1 3.1924 -3.4566 0.2117 30 1 4.3923 -6.0338 -0.7464 31 1 4.2365 -4.6961 0.4221 32 1 4.2922 -6.2337 2.3039 33 1 5.6450 -6.6802 1.2316 34 1 6.6000 -8.2298 0.2548 35 1 6.5991 -8.4274 2.0237 36 1 7.8992 -10.1132 0.9404 37 1 2.1227 -7.8481 2.1231 38 1 2.2822 -9.1827 0.9515 39 1 0.8733 -7.1998 0.1514 40 1 2.2236 -7.6452 -0.9220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932908932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:51 Heat of formation + Delta-G solvation = -242.418556 kcal Electronic energy + Delta-G solvation = -31351.083418 eV Core-core repulsion = 26365.971740 eV Total energy + Delta-G solvation = -4985.111678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.82437 -46.38293 -46.27175 -40.71510 -39.57783 -37.37472 -36.55579 -35.06651 -34.12293 -32.88106 -31.68254 -29.08332 -28.32751 -26.73231 -24.52428 -24.06786 -22.97858 -21.64059 -20.29376 -19.30090 -18.65347 -18.04049 -17.45584 -17.26995 -17.09582 -16.68799 -16.38732 -16.26125 -16.14434 -15.42779 -15.25409 -14.71397 -14.44777 -14.25145 -13.93458 -13.72272 -13.39422 -13.31022 -13.06085 -13.00322 -12.81919 -12.75393 -12.62430 -12.55024 -12.50526 -12.46503 -11.87230 -11.77833 -11.49728 -11.34160 -11.10124 -10.82025 -10.67478 -10.25424 -10.00141 -9.77496 -9.60575 -9.40226 -8.66228 -8.48294 -8.29398 -6.84105 -4.56164 2.27687 2.32942 2.86062 3.26426 3.33544 3.47614 3.51208 3.79258 4.01618 4.19461 4.28038 4.29198 4.46855 4.57622 4.69314 4.73147 4.79581 4.82935 4.92574 5.12870 5.17974 5.34200 5.39345 5.46883 5.52743 5.59567 5.68226 5.79286 6.09750 6.39063 6.55491 6.90514 6.95275 7.07174 7.14441 7.39280 7.85004 8.03359 8.29498 8.38279 8.91825 9.12302 10.50806 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.003103 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.555366 B = 9019.921537 C = 9455.171898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.052 3.948 3 Si 1.060 2.940 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.650 4.650 8 H 0.073 0.927 9 C 0.253 3.747 10 H 0.080 0.920 11 N -0.719 5.719 12 C 0.704 3.296 13 O -0.580 6.580 14 N -0.635 5.635 15 C 0.097 3.903 16 C 0.091 3.909 17 N -0.611 5.611 18 C 0.514 3.486 19 O -0.521 6.521 20 C 0.060 3.940 21 O -0.549 6.549 22 C 0.099 3.901 23 C 0.118 3.882 24 C 0.413 3.587 25 F -0.175 7.175 26 F -0.207 7.207 27 F -0.199 7.199 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -11.079 1.414 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.162 4.162 3 Si 0.886 3.114 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.685 4.685 8 H 0.091 0.909 9 C 0.145 3.855 10 H 0.098 0.902 11 N -0.373 5.373 12 C 0.405 3.595 13 O -0.456 6.456 14 N -0.374 5.374 15 C -0.028 4.028 16 C -0.033 4.033 17 N -0.347 5.347 18 C 0.301 3.699 19 O -0.396 6.396 20 C -0.021 4.021 21 O -0.354 6.354 22 C -0.024 4.024 23 C -0.006 4.006 24 C 0.357 3.643 25 F -0.157 7.157 26 F -0.188 7.188 27 F -0.180 7.180 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.673 -10.355 1.496 15.675 hybrid contribution 1.352 -1.169 0.319 1.816 sum 13.024 -11.524 1.815 17.485 Atomic orbital electron populations 1.70744 1.07636 1.31876 1.37056 1.25925 0.95666 1.02841 0.91749 0.83701 0.75526 0.75098 0.77101 1.20343 1.20650 1.20960 1.21550 1.05809 0.93383 1.47758 0.90920 1.19573 0.95204 0.85433 0.85242 0.90236 1.45249 1.12074 1.04227 1.75788 1.15987 0.85176 0.80690 0.77633 1.90913 1.12589 1.84757 1.57373 1.47171 1.05160 1.06175 1.78937 1.22068 0.81263 1.00620 0.98841 1.22310 0.98634 0.82141 1.00206 1.48002 1.06978 1.06559 1.73164 1.20351 0.88640 0.84301 0.76640 1.90725 1.76603 1.24318 1.47937 1.21892 0.91132 0.87074 1.02004 1.86588 1.24152 1.27804 1.96826 1.22087 0.78516 1.01826 0.99953 1.21792 1.00809 0.80270 0.97704 1.23102 0.72701 0.73016 0.95449 1.93156 1.75794 1.51185 1.95546 1.93094 1.82485 1.54334 1.88921 1.93008 1.42840 1.95622 1.86576 0.91053 0.76813 0.90768 0.88648 0.89986 0.88765 0.90343 0.90409 0.76623 0.90557 0.87789 0.87369 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.25 12.31 55.43 0.68 -22.57 16 2 C 0.05 1.35 4.25 -17.82 -0.08 1.27 16 3 Si 1.06 22.64 29.98 -169.99 -5.10 17.55 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.65 -16.02 8.32 -34.44 -0.29 -16.31 16 8 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 9 C 0.25 5.96 2.01 -69.08 -0.14 5.82 16 10 H 0.08 2.12 6.39 -51.93 -0.33 1.79 16 11 N -0.72 -13.82 4.81 -59.81 -0.29 -14.11 16 12 C 0.70 13.25 7.81 -86.93 -0.68 12.57 16 13 O -0.58 -13.21 14.58 5.29 0.08 -13.13 16 14 N -0.64 -8.79 2.94 -177.94 -0.52 -9.32 16 15 C 0.10 0.93 6.55 -3.37 -0.02 0.90 16 16 C 0.09 0.71 6.52 -3.37 -0.02 0.69 16 17 N -0.61 -6.21 2.95 -172.21 -0.51 -6.72 16 18 C 0.51 5.87 7.77 -10.99 -0.09 5.79 16 19 O -0.52 -8.35 15.90 -14.36 -0.23 -8.58 16 20 C 0.06 0.43 5.87 36.01 0.21 0.64 16 21 O -0.55 -4.82 13.19 -55.14 -0.73 -5.55 16 22 C 0.10 1.12 6.59 -3.59 -0.02 1.10 16 23 C 0.12 1.47 6.60 -3.59 -0.02 1.45 16 24 C 0.41 9.90 2.82 37.16 0.10 10.00 16 25 F -0.18 -4.55 14.69 2.25 0.03 -4.51 16 26 F -0.21 -4.93 15.99 2.25 0.04 -4.90 16 27 F -0.20 -4.46 16.97 2.25 0.04 -4.43 16 28 H 0.28 7.79 7.23 -40.82 -0.30 7.49 16 29 H 0.40 6.43 6.10 -40.82 -0.25 6.19 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.87 5.70 -51.93 -0.30 0.58 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.40 5.91 -51.93 -0.31 0.09 16 34 H 0.08 0.35 7.72 -51.93 -0.40 -0.05 16 35 H 0.08 0.36 7.91 -51.93 -0.41 -0.05 16 36 H 0.39 1.10 9.12 45.56 0.42 1.51 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.21 6.99 -51.93 -0.36 0.85 16 39 H 0.11 1.51 6.99 -51.93 -0.36 1.15 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -35.50 341.25 -5.90 -41.40 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.50 Total: 5.79 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: -1.04 Total: 23.93 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.64 Total: -52.71 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.88 Total: -27.26 kcal Atomic # 9 Polarization: -13.94 SS G_CDS: 0.11 Total: -13.84 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.10 Total: 17.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.50 -5.90 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932908932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.019 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds