Wall clock time and date at job start Tue Mar 31 2020 22:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99770 * 2 1 4 4 H 1.48498 * 109.47164 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46947 * 119.99900 * 3 2 1 6 6 H 1.48500 * 109.46796 * 239.99313 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99847 * 152.70019 * 7 2 1 9 9 C 1.50704 * 119.99817 * 332.70164 * 7 2 1 10 10 H 1.08997 * 109.47168 * 54.13788 * 9 7 2 11 11 N 1.46501 * 109.46947 * 174.14543 * 9 7 2 12 12 C 1.34771 * 119.99827 * 205.00082 * 11 9 7 13 13 O 1.21591 * 119.99963 * 5.33750 * 12 11 9 14 14 N 1.34772 * 120.00058 * 185.34303 * 12 11 9 15 15 C 1.46962 * 120.59488 * 5.06552 * 14 12 11 16 16 C 1.53809 * 108.39719 * 124.76032 * 15 14 12 17 17 N 1.46968 * 108.58115 * 49.63955 * 16 15 14 18 18 C 1.34777 * 120.59355 * 124.62386 * 17 16 15 19 19 O 1.21284 * 119.99825 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00137 * 0.02562 * 18 17 16 21 21 O 1.42904 * 109.46903 * 180.02562 * 20 18 17 22 22 C 1.46969 * 118.81258 * 304.64946 * 17 16 15 23 23 C 1.46973 * 120.59325 * 185.35095 * 14 12 11 24 24 C 1.53004 * 109.46851 * 294.14042 * 9 7 2 25 25 F 1.39901 * 109.46867 * 56.93708 * 24 9 7 26 26 F 1.39894 * 109.46918 * 176.93706 * 24 9 7 27 27 F 1.39904 * 109.47218 * 296.93880 * 24 9 7 28 28 H 0.96996 * 120.00060 * 174.48161 * 1 2 3 29 29 H 0.97003 * 119.99972 * 24.99414 * 11 9 7 30 30 H 1.09002 * 109.61127 * 244.54157 * 15 14 12 31 31 H 1.09000 * 109.61044 * 5.05585 * 15 14 12 32 32 H 1.09006 * 109.74671 * 289.85258 * 16 15 14 33 33 H 1.09004 * 109.53291 * 169.30364 * 16 15 14 34 34 H 1.08994 * 109.47236 * 300.00259 * 20 18 17 35 35 H 1.08998 * 109.46848 * 60.00516 * 20 18 17 36 36 H 0.96703 * 113.99352 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.60509 * 295.47814 * 22 17 16 38 38 H 1.08996 * 109.60965 * 174.96772 * 22 17 16 39 39 H 1.08996 * 109.61225 * 354.94543 * 23 14 12 40 40 H 1.09006 * 109.60782 * 115.28867 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 2.9942 -1.2463 -0.4284 9 6 1.3769 -2.4262 0.5997 10 1 0.4024 -2.5968 0.1420 11 7 2.2412 -3.5832 0.3539 12 6 1.7148 -4.8236 0.3251 13 8 0.5111 -4.9752 0.4060 14 7 2.5226 -5.8959 0.2068 15 6 3.9835 -5.7368 0.2195 16 6 4.5601 -6.6355 1.3266 17 7 3.9957 -7.9841 1.1763 18 6 4.8036 -9.0564 1.0570 19 8 4.3263 -10.1644 0.9331 20 6 6.2999 -8.8785 1.0776 21 8 6.9329 -10.1517 0.9352 22 6 2.5347 -8.1426 1.1579 23 6 1.9582 -7.2445 0.0564 24 6 1.2048 -2.2293 2.1072 25 9 0.4372 -1.0838 2.3432 26 9 0.5589 -3.3440 2.6523 27 9 2.4612 -2.0799 2.7044 28 1 -0.4850 -0.8361 -0.0808 29 1 3.1924 -3.4566 0.2117 30 1 4.3923 -6.0338 -0.7464 31 1 4.2365 -4.6961 0.4221 32 1 4.2922 -6.2337 2.3039 33 1 5.6450 -6.6802 1.2316 34 1 6.6000 -8.2298 0.2548 35 1 6.5991 -8.4274 2.0237 36 1 7.8992 -10.1132 0.9404 37 1 2.1227 -7.8481 2.1231 38 1 2.2822 -9.1827 0.9515 39 1 0.8733 -7.1998 0.1514 40 1 2.2236 -7.6452 -0.9220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932908932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:50 Heat of formation + Delta-G solvation = -270.289718 kcal Electronic energy + Delta-G solvation = -31352.292002 eV Core-core repulsion = 26365.971740 eV Total energy + Delta-G solvation = -4986.320262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.76940 -48.30919 -48.24178 -41.76779 -40.75606 -38.38146 -37.25716 -36.79120 -35.29661 -34.54429 -32.69155 -30.31922 -29.51704 -27.71307 -26.48382 -24.93612 -24.23513 -23.19759 -21.50191 -20.65816 -19.72034 -19.28347 -19.16200 -19.01448 -18.64727 -18.11967 -17.31985 -17.29056 -16.96460 -16.69667 -16.45532 -15.80868 -15.61770 -15.34220 -15.32093 -15.23714 -15.08970 -14.91404 -14.74673 -14.55636 -14.51766 -14.46678 -14.40134 -13.97020 -13.57190 -13.39008 -13.23505 -13.00141 -12.65720 -12.62512 -12.49072 -12.46119 -11.91156 -11.45389 -11.31945 -11.13756 -10.86198 -10.50231 -10.43781 -10.17488 -9.40742 -8.85447 -6.57118 1.33009 1.46721 1.58739 1.64661 1.79878 1.85895 1.95517 2.25616 2.52339 2.80460 2.89990 3.24007 3.44677 3.60996 3.68542 3.70457 3.76506 3.85514 4.05302 4.07131 4.19884 4.26325 4.38597 4.42200 4.53164 4.57835 4.64699 4.72768 4.88418 5.23169 5.30218 5.32896 5.44154 5.81862 6.06507 6.21767 6.30570 6.88645 6.90965 7.04621 7.17137 7.48092 8.48075 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.003103 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.555366 B = 9019.921537 C = 9455.171898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.008 3.992 3 Si 1.104 2.896 4 H -0.288 1.288 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.651 4.651 8 H 0.088 0.912 9 C 0.259 3.741 10 H 0.042 0.958 11 N -0.711 5.711 12 C 0.699 3.301 13 O -0.627 6.627 14 N -0.626 5.626 15 C 0.088 3.912 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.505 3.495 19 O -0.578 6.578 20 C 0.063 3.937 21 O -0.583 6.583 22 C 0.106 3.894 23 C 0.122 3.878 24 C 0.415 3.585 25 F -0.189 7.189 26 F -0.208 7.208 27 F -0.186 7.186 28 H 0.262 0.738 29 H 0.412 0.588 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.584 -10.653 1.316 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.200 4.200 3 Si 0.924 3.076 4 H -0.214 1.214 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.686 4.686 8 H 0.106 0.894 9 C 0.150 3.850 10 H 0.059 0.941 11 N -0.367 5.367 12 C 0.400 3.600 13 O -0.508 6.508 14 N -0.364 5.364 15 C -0.035 4.035 16 C -0.030 4.030 17 N -0.343 5.343 18 C 0.295 3.705 19 O -0.457 6.457 20 C -0.017 4.017 21 O -0.392 6.392 22 C -0.018 4.018 23 C -0.002 4.002 24 C 0.359 3.641 25 F -0.171 7.171 26 F -0.190 7.190 27 F -0.168 7.168 28 H 0.072 0.928 29 H 0.251 0.749 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.161 0.839 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.261 0.739 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.662 -9.950 1.391 18.607 hybrid contribution 0.177 -1.400 0.355 1.455 sum 15.838 -11.351 1.746 19.564 Atomic orbital electron populations 1.70867 1.08820 1.30838 1.39952 1.27294 0.95613 1.06371 0.90727 0.83153 0.74694 0.71117 0.78639 1.21406 1.19334 1.18127 1.21833 1.06120 0.93459 1.47179 0.89401 1.19145 0.94250 0.86819 0.84746 0.94059 1.44950 1.12352 1.03406 1.76025 1.16162 0.84982 0.81406 0.77431 1.90882 1.15031 1.85510 1.59364 1.47204 1.06889 1.05055 1.77263 1.22474 0.78174 1.01823 1.01045 1.22519 1.01206 0.80066 0.99161 1.48080 1.06165 1.07615 1.72393 1.21323 0.90720 0.83411 0.75094 1.90701 1.77885 1.26530 1.50623 1.22050 0.87421 0.87139 1.05085 1.86527 1.26492 1.29170 1.97059 1.21861 0.80002 1.00989 0.98975 1.21806 0.99756 0.79781 0.98879 1.23052 0.72886 0.72528 0.95679 1.93128 1.76306 1.51991 1.95647 1.93091 1.82624 1.54322 1.88931 1.93020 1.41852 1.95543 1.86385 0.92845 0.74898 0.88282 0.87835 0.90356 0.83882 0.86706 0.87149 0.73862 0.91310 0.88433 0.89561 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.12 12.31 21.45 0.26 -48.86 16 2 C 0.01 0.41 4.25 84.66 0.36 0.77 16 3 Si 1.10 44.18 29.98 68.60 2.06 46.24 16 4 H -0.29 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.65 -31.50 8.32 25.60 0.21 -31.28 16 8 H 0.09 3.92 7.86 -2.91 -0.02 3.89 16 9 C 0.26 12.31 2.01 44.25 0.09 12.40 16 10 H 0.04 2.31 6.39 -2.39 -0.02 2.29 16 11 N -0.71 -26.73 4.81 -461.41 -2.22 -28.95 16 12 C 0.70 26.25 7.81 179.06 1.40 27.65 16 13 O -0.63 -29.60 14.58 -4.00 -0.06 -29.66 16 14 N -0.63 -16.52 2.94 -835.14 -2.46 -18.98 16 15 C 0.09 1.36 6.55 86.56 0.57 1.93 16 16 C 0.09 1.07 6.52 86.56 0.56 1.63 16 17 N -0.61 -10.89 2.95 -817.12 -2.41 -13.30 16 18 C 0.50 10.39 7.77 87.66 0.68 11.07 16 19 O -0.58 -18.33 15.90 15.99 0.25 -18.08 16 20 C 0.06 0.63 5.87 71.24 0.42 1.05 16 21 O -0.58 -8.58 13.19 -129.94 -1.71 -10.29 16 22 C 0.11 2.35 6.59 86.41 0.57 2.92 16 23 C 0.12 2.99 6.60 86.41 0.57 3.56 16 24 C 0.41 19.89 2.82 71.98 0.20 20.09 16 25 F -0.19 -9.95 14.69 44.97 0.66 -9.29 16 26 F -0.21 -10.06 15.99 44.97 0.72 -9.34 16 27 F -0.19 -8.09 16.97 44.97 0.76 -7.33 16 28 H 0.26 15.29 7.23 -92.71 -0.67 14.62 16 29 H 0.41 12.43 6.10 -92.71 -0.57 11.86 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.48 5.70 -2.39 -0.01 1.46 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.14 0.29 5.91 -2.39 -0.01 0.28 16 34 H 0.12 0.33 7.72 -2.39 -0.02 0.31 16 35 H 0.11 0.41 7.91 -2.39 -0.02 0.39 16 36 H 0.41 1.00 9.12 -74.06 -0.68 0.32 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 2.33 6.99 -2.39 -0.02 2.31 16 39 H 0.09 2.53 6.99 -2.39 -0.02 2.51 16 40 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -80.88 341.25 1.49 -79.39 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.00 Total: 16.66 kcal Atomic # 6 Polarization: 46.14 SS G_CDS: 5.64 Total: 51.78 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -6.82 Total: -110.09 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -1.52 Total: -58.03 kcal Atomic # 9 Polarization: -28.09 SS G_CDS: 2.14 Total: -25.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.06 Total: 46.24 kcal Total: -80.88 1.49 -79.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932908932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.903 kcal (2) G-P(sol) polarization free energy of solvation -80.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds