Wall clock time and date at job start Tue Mar 31 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47157 * 274.91931 * 3 2 1 5 5 H 1.48502 * 109.46828 * 34.91792 * 3 2 1 6 6 H 1.48501 * 109.47204 * 154.91478 * 3 2 1 7 7 C 1.37877 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99897 * 4.89497 * 7 2 1 9 9 C 1.50696 * 120.00182 * 184.90328 * 7 2 1 10 10 H 1.08991 * 109.47620 * 54.84725 * 9 7 2 11 11 N 1.46503 * 109.46821 * 294.84408 * 9 7 2 12 12 C 1.34777 * 119.99666 * 154.99918 * 11 9 7 13 13 O 1.21588 * 120.00293 * 4.89354 * 12 11 9 14 14 N 1.34778 * 119.99857 * 184.88280 * 12 11 9 15 15 C 1.46966 * 120.59624 * 174.43417 * 14 12 11 16 16 C 1.53808 * 108.39733 * 124.76081 * 15 14 12 17 17 N 1.46965 * 108.57989 * 49.64245 * 16 15 14 18 18 C 1.34777 * 120.59534 * 124.62239 * 17 16 15 19 19 O 1.21275 * 119.99877 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00009 * 0.02562 * 18 17 16 21 21 O 1.42899 * 109.47307 * 180.02562 * 20 18 17 22 22 C 1.46962 * 118.81036 * 304.64505 * 17 16 15 23 23 C 1.46965 * 120.59527 * 354.72409 * 14 12 11 24 24 C 1.53003 * 109.47149 * 174.84712 * 9 7 2 25 25 F 1.39899 * 109.46904 * 185.01356 * 24 9 7 26 26 F 1.39892 * 109.47232 * 305.01700 * 24 9 7 27 27 F 1.39909 * 109.46996 * 65.01870 * 24 9 7 28 28 H 0.96995 * 120.00675 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99845 * 335.00023 * 11 9 7 30 30 H 1.08996 * 109.61386 * 244.55193 * 15 14 12 31 31 H 1.09001 * 109.60797 * 5.05610 * 15 14 12 32 32 H 1.09003 * 109.74507 * 289.84897 * 16 15 14 33 33 H 1.09002 * 109.53431 * 169.30665 * 16 15 14 34 34 H 1.08999 * 109.46733 * 300.00149 * 20 18 17 35 35 H 1.09000 * 109.47393 * 59.99899 * 20 18 17 36 36 H 0.96701 * 114.00281 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.61187 * 295.48331 * 22 17 16 38 38 H 1.09000 * 109.61078 * 174.96855 * 22 17 16 39 39 H 1.09003 * 109.60733 * 354.93727 * 23 14 12 40 40 H 1.08998 * 109.61372 * 115.27872 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3926 2.1065 -1.3949 5 1 1.5023 2.6204 0.8014 6 1 3.5947 1.4125 0.5936 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1277 -0.0808 9 6 3.5074 -1.1964 0.1110 10 1 3.8066 -0.6422 1.0005 11 7 4.0862 -0.5632 -1.0766 12 6 5.3075 0.0029 -1.0108 13 8 5.9662 -0.0891 0.0070 14 7 5.7988 0.6708 -2.0734 15 6 7.0736 1.3957 -1.9771 16 6 8.0071 0.8856 -3.0880 17 7 7.2745 0.9073 -4.3619 18 6 7.7653 1.5760 -5.4242 19 8 7.1516 1.5871 -6.4701 20 6 9.0768 2.3099 -5.3123 21 8 9.3806 2.9355 -6.5606 22 6 5.9970 0.1871 -4.4565 23 6 5.0662 0.6925 -3.3472 24 6 4.0087 -2.6381 0.2158 25 9 5.3906 -2.6366 0.4339 26 9 3.3689 -3.2780 1.2827 27 9 3.7252 -3.3181 -0.9736 28 1 -0.4851 0.8399 0.0004 29 1 3.5903 -0.5515 -1.9102 30 1 6.8977 2.4637 -2.1050 31 1 7.5267 1.2112 -1.0031 32 1 8.3227 -0.1336 -2.8648 33 1 8.8801 1.5346 -3.1570 34 1 9.0027 3.0696 -4.5341 35 1 9.8674 1.6043 -5.0571 36 1 10.2135 3.4269 -6.5619 37 1 6.1693 -0.8818 -4.3307 38 1 5.5423 0.3749 -5.4292 39 1 4.1932 0.0434 -3.2782 40 1 4.7480 1.7112 -3.5689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932908933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:53 Heat of formation + Delta-G solvation = -239.991692 kcal Electronic energy + Delta-G solvation = -31539.766546 eV Core-core repulsion = 26554.760105 eV Total energy + Delta-G solvation = -4985.006441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.08751 -46.59176 -46.58019 -40.68441 -39.56368 -37.35891 -36.53174 -35.02069 -34.16505 -32.58416 -31.67326 -29.64589 -28.34987 -26.92476 -25.04235 -23.97684 -22.88957 -21.41158 -20.24545 -19.21054 -18.62201 -18.15689 -17.56149 -17.45418 -16.92021 -16.69554 -16.45894 -16.26428 -15.95403 -15.82064 -15.20243 -14.68076 -14.57947 -14.41065 -14.15855 -13.54144 -13.53106 -13.44306 -13.14121 -13.04390 -12.96952 -12.84296 -12.77765 -12.75423 -12.69098 -12.50751 -11.97236 -11.72680 -11.62560 -11.47144 -11.19570 -10.69925 -10.65560 -10.20793 -9.97234 -9.91500 -9.73955 -9.36204 -9.07079 -8.62726 -8.24486 -6.55952 -4.70273 2.30681 2.36427 2.89014 3.04760 3.15856 3.25453 3.49426 3.83419 3.87125 4.06987 4.11181 4.32114 4.56124 4.60442 4.69224 4.74684 4.86332 4.91742 4.94930 5.02655 5.13919 5.17885 5.19671 5.34261 5.48586 5.60031 5.62408 5.77852 6.11217 6.28189 6.52493 6.83875 6.95836 7.04933 7.15519 7.22937 7.84634 7.88243 8.39701 8.47741 8.96000 8.99141 10.52076 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.003799 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.954008 B = 7369.208030 C = 8133.462716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.096 3.904 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.096 0.904 9 C 0.222 3.778 10 H 0.091 0.909 11 N -0.731 5.731 12 C 0.697 3.303 13 O -0.582 6.582 14 N -0.637 5.637 15 C 0.115 3.885 16 C 0.092 3.908 17 N -0.611 5.611 18 C 0.513 3.487 19 O -0.521 6.521 20 C 0.061 3.939 21 O -0.549 6.549 22 C 0.101 3.899 23 C 0.096 3.904 24 C 0.441 3.559 25 F -0.191 7.191 26 F -0.184 7.184 27 F -0.192 7.192 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 4.663 -6.924 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.114 4.114 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.575 4.575 8 H 0.114 0.886 9 C 0.119 3.881 10 H 0.108 0.892 11 N -0.390 5.390 12 C 0.400 3.600 13 O -0.460 6.460 14 N -0.377 5.377 15 C -0.009 4.009 16 C -0.032 4.032 17 N -0.347 5.347 18 C 0.300 3.700 19 O -0.395 6.395 20 C -0.020 4.020 21 O -0.353 6.353 22 C -0.022 4.022 23 C -0.028 4.028 24 C 0.385 3.615 25 F -0.173 7.173 26 F -0.166 7.166 27 F -0.173 7.173 28 H 0.085 0.915 29 H 0.234 0.766 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.766 4.399 -6.888 17.759 hybrid contribution 0.694 0.881 -0.170 1.134 sum 16.460 5.279 -7.059 18.672 Atomic orbital electron populations 1.69868 1.06413 1.28304 1.44731 1.24932 0.94771 0.99336 0.92313 0.86789 0.81023 0.82621 0.78938 1.19972 1.21424 1.17809 1.20841 0.85946 0.96529 1.54204 0.88632 1.20197 0.95634 0.84002 0.88309 0.89170 1.47128 1.16414 1.59672 1.15781 1.16308 0.82289 0.78373 0.83061 1.90882 1.59396 1.65423 1.30270 1.47300 1.23624 1.55538 1.11226 1.21854 0.83762 0.95260 1.00074 1.22348 0.94696 1.03124 0.83033 1.47999 1.23023 1.52059 1.11641 1.20341 0.87033 0.79136 0.83453 1.90727 1.60057 1.60595 1.28152 1.21884 0.95282 0.97098 0.87782 1.86589 1.45168 1.71384 1.32205 1.22031 0.83491 0.96266 1.00462 1.22023 0.94905 1.02665 0.83232 1.21529 0.74570 0.92399 0.72998 1.93154 1.32366 1.97148 1.94609 1.93107 1.81964 1.84174 1.57358 1.93076 1.93414 1.82882 1.47971 0.91511 0.76645 0.91525 0.87294 0.90053 0.88981 0.90388 0.90446 0.76669 0.90434 0.87659 0.88567 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.30 13.96 55.43 0.77 -22.53 16 2 C 0.10 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.88 19.73 26.03 -169.99 -4.42 15.30 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.25 -5.86 5.80 56.52 0.33 -5.53 16 7 C -0.54 -13.44 8.65 -34.44 -0.30 -13.74 16 8 H 0.10 2.61 7.95 -52.48 -0.42 2.20 16 9 C 0.22 4.98 1.36 -69.08 -0.09 4.89 16 10 H 0.09 2.16 6.56 -51.93 -0.34 1.82 16 11 N -0.73 -14.46 2.78 -59.81 -0.17 -14.62 16 12 C 0.70 13.22 7.11 -86.92 -0.62 12.60 16 13 O -0.58 -12.65 14.12 5.29 0.07 -12.57 16 14 N -0.64 -9.37 2.94 -177.94 -0.52 -9.89 16 15 C 0.12 1.29 6.63 -3.37 -0.02 1.27 16 16 C 0.09 0.77 6.52 -3.37 -0.02 0.75 16 17 N -0.61 -6.44 2.95 -172.21 -0.51 -6.95 16 18 C 0.51 6.07 7.77 -10.99 -0.09 5.99 16 19 O -0.52 -8.55 15.90 -14.35 -0.23 -8.78 16 20 C 0.06 0.45 5.87 36.01 0.21 0.66 16 21 O -0.55 -4.99 13.19 -55.14 -0.73 -5.72 16 22 C 0.10 1.14 6.59 -3.60 -0.02 1.12 16 23 C 0.10 1.22 6.56 -3.59 -0.02 1.19 16 24 C 0.44 9.55 2.79 37.16 0.10 9.65 16 25 F -0.19 -4.13 15.63 2.25 0.04 -4.09 16 26 F -0.18 -4.07 16.86 2.25 0.04 -4.03 16 27 F -0.19 -4.03 16.97 2.25 0.04 -3.99 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 7.19 6.05 -40.82 -0.25 6.94 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.32 6.99 -51.93 -0.36 0.96 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.45 5.91 -51.93 -0.31 0.14 16 34 H 0.08 0.39 7.72 -51.93 -0.40 -0.01 16 35 H 0.08 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.39 1.20 9.12 45.56 0.42 1.61 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.24 6.99 -51.93 -0.36 0.88 16 39 H 0.10 1.21 5.62 -51.93 -0.29 0.92 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -34.61 338.38 -5.11 -39.72 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.63 Total: 6.33 kcal Atomic # 6 Polarization: 27.70 SS G_CDS: -0.97 Total: 26.73 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.42 Total: -54.00 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.88 Total: -27.07 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 0.11 Total: -12.11 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.42 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.61 -5.11 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932908933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.269 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds