Wall clock time and date at job start Tue Mar 31 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48503 * 109.47157 * 274.91931 * 3 2 1 5 5 H 1.48502 * 109.46828 * 34.91792 * 3 2 1 6 6 H 1.48501 * 109.47204 * 154.91478 * 3 2 1 7 7 C 1.37877 * 120.00403 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99897 * 4.89497 * 7 2 1 9 9 C 1.50696 * 120.00182 * 184.90328 * 7 2 1 10 10 H 1.08991 * 109.47620 * 54.84725 * 9 7 2 11 11 N 1.46503 * 109.46821 * 294.84408 * 9 7 2 12 12 C 1.34777 * 119.99666 * 154.99918 * 11 9 7 13 13 O 1.21588 * 120.00293 * 4.89354 * 12 11 9 14 14 N 1.34778 * 119.99857 * 184.88280 * 12 11 9 15 15 C 1.46966 * 120.59624 * 174.43417 * 14 12 11 16 16 C 1.53808 * 108.39733 * 124.76081 * 15 14 12 17 17 N 1.46965 * 108.57989 * 49.64245 * 16 15 14 18 18 C 1.34777 * 120.59534 * 124.62239 * 17 16 15 19 19 O 1.21275 * 119.99877 * 180.02562 * 18 17 16 20 20 C 1.50700 * 120.00009 * 0.02562 * 18 17 16 21 21 O 1.42899 * 109.47307 * 180.02562 * 20 18 17 22 22 C 1.46962 * 118.81036 * 304.64505 * 17 16 15 23 23 C 1.46965 * 120.59527 * 354.72409 * 14 12 11 24 24 C 1.53003 * 109.47149 * 174.84712 * 9 7 2 25 25 F 1.39899 * 109.46904 * 185.01356 * 24 9 7 26 26 F 1.39892 * 109.47232 * 305.01700 * 24 9 7 27 27 F 1.39909 * 109.46996 * 65.01870 * 24 9 7 28 28 H 0.96995 * 120.00675 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99845 * 335.00023 * 11 9 7 30 30 H 1.08996 * 109.61386 * 244.55193 * 15 14 12 31 31 H 1.09001 * 109.60797 * 5.05610 * 15 14 12 32 32 H 1.09003 * 109.74507 * 289.84897 * 16 15 14 33 33 H 1.09002 * 109.53431 * 169.30665 * 16 15 14 34 34 H 1.08999 * 109.46733 * 300.00149 * 20 18 17 35 35 H 1.09000 * 109.47393 * 59.99899 * 20 18 17 36 36 H 0.96701 * 114.00281 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.61187 * 295.48331 * 22 17 16 38 38 H 1.09000 * 109.61078 * 174.96855 * 22 17 16 39 39 H 1.09003 * 109.60733 * 354.93727 * 23 14 12 40 40 H 1.08998 * 109.61372 * 115.27872 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3926 2.1065 -1.3949 5 1 1.5023 2.6204 0.8014 6 1 3.5947 1.4125 0.5936 7 6 2.0046 -1.1940 -0.0005 8 1 1.4675 -2.1277 -0.0808 9 6 3.5074 -1.1964 0.1110 10 1 3.8066 -0.6422 1.0005 11 7 4.0862 -0.5632 -1.0766 12 6 5.3075 0.0029 -1.0108 13 8 5.9662 -0.0891 0.0070 14 7 5.7988 0.6708 -2.0734 15 6 7.0736 1.3957 -1.9771 16 6 8.0071 0.8856 -3.0880 17 7 7.2745 0.9073 -4.3619 18 6 7.7653 1.5760 -5.4242 19 8 7.1516 1.5871 -6.4701 20 6 9.0768 2.3099 -5.3123 21 8 9.3806 2.9355 -6.5606 22 6 5.9970 0.1871 -4.4565 23 6 5.0662 0.6925 -3.3472 24 6 4.0087 -2.6381 0.2158 25 9 5.3906 -2.6366 0.4339 26 9 3.3689 -3.2780 1.2827 27 9 3.7252 -3.3181 -0.9736 28 1 -0.4851 0.8399 0.0004 29 1 3.5903 -0.5515 -1.9102 30 1 6.8977 2.4637 -2.1050 31 1 7.5267 1.2112 -1.0031 32 1 8.3227 -0.1336 -2.8648 33 1 8.8801 1.5346 -3.1570 34 1 9.0027 3.0696 -4.5341 35 1 9.8674 1.6043 -5.0571 36 1 10.2135 3.4269 -6.5619 37 1 6.1693 -0.8818 -4.3307 38 1 5.5423 0.3749 -5.4292 39 1 4.1932 0.0434 -3.2782 40 1 4.7480 1.7112 -3.5689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932908933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:53 Heat of formation + Delta-G solvation = -266.843243 kcal Electronic energy + Delta-G solvation = -31540.930917 eV Core-core repulsion = 26554.760105 eV Total energy + Delta-G solvation = -4986.170812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.85816 -48.36186 -48.34494 -41.75988 -40.75104 -38.37689 -37.26266 -36.71100 -35.30703 -34.40002 -32.63795 -31.10465 -29.38410 -27.82913 -26.94220 -24.90229 -24.00975 -23.00951 -21.44295 -20.61756 -19.80814 -19.31188 -19.26921 -18.73489 -18.48019 -18.32515 -17.61409 -17.13009 -17.01936 -16.82612 -16.44805 -16.26014 -15.58693 -15.39692 -15.28551 -15.22412 -15.09533 -14.84780 -14.81373 -14.72644 -14.56872 -14.54160 -14.47245 -13.97169 -13.60470 -13.53194 -13.34687 -12.96079 -12.81614 -12.53330 -12.52654 -12.39022 -12.02746 -11.85917 -11.32495 -11.14251 -11.00036 -10.84883 -10.44761 -10.15009 -9.38313 -8.53769 -6.72586 1.22129 1.33310 1.38763 1.44921 1.48116 1.82422 1.91303 2.14388 2.26326 2.63118 3.02793 3.22079 3.25858 3.39227 3.58992 3.73053 3.76540 3.79602 4.04811 4.09282 4.21742 4.26210 4.36678 4.39270 4.48320 4.59883 4.70242 4.73516 4.92031 4.95607 5.26969 5.37923 5.45616 5.75990 5.93357 6.23284 6.42638 6.88290 6.90261 6.98765 7.05972 7.49147 8.58328 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.003799 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.954008 B = 7369.208030 C = 8133.462716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.060 3.940 3 Si 0.938 3.062 4 H -0.254 1.254 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.234 3.766 10 H 0.078 0.922 11 N -0.733 5.733 12 C 0.696 3.304 13 O -0.611 6.611 14 N -0.632 5.632 15 C 0.107 3.893 16 C 0.099 3.901 17 N -0.608 5.608 18 C 0.504 3.496 19 O -0.577 6.577 20 C 0.063 3.937 21 O -0.583 6.583 22 C 0.105 3.895 23 C 0.096 3.904 24 C 0.444 3.556 25 F -0.188 7.188 26 F -0.188 7.188 27 F -0.187 7.187 28 H 0.279 0.721 29 H 0.404 0.596 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.409 0.591 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.080 6.188 -7.513 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.763 3.237 4 H -0.178 1.178 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.128 3.872 10 H 0.095 0.905 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.491 6.491 14 N -0.370 5.370 15 C -0.016 4.016 16 C -0.024 4.024 17 N -0.343 5.343 18 C 0.294 3.706 19 O -0.456 6.456 20 C -0.017 4.017 21 O -0.392 6.392 22 C -0.019 4.019 23 C -0.028 4.028 24 C 0.388 3.612 25 F -0.169 7.169 26 F -0.170 7.170 27 F -0.169 7.169 28 H 0.089 0.911 29 H 0.243 0.757 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.261 0.739 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.521 5.945 -7.503 20.848 hybrid contribution -0.086 0.357 0.007 0.367 sum 18.435 6.302 -7.497 20.875 Atomic orbital electron populations 1.69952 1.07848 1.29308 1.46605 1.25517 0.95192 1.02037 0.91855 0.85879 0.79061 0.79019 0.79745 1.17809 1.21843 1.18674 1.20764 0.87294 0.95404 1.54396 0.91790 1.19763 0.94125 0.84529 0.88769 0.90472 1.46608 1.17275 1.60071 1.15193 1.16297 0.81654 0.78524 0.83706 1.90863 1.59982 1.66525 1.31745 1.47364 1.24715 1.54431 1.10538 1.22175 0.82512 0.95958 1.00949 1.22475 0.94984 1.04225 0.80701 1.48090 1.22590 1.51308 1.12319 1.21284 0.88179 0.78554 0.82566 1.90702 1.61960 1.62672 1.30303 1.22039 0.93348 0.98260 0.88056 1.86528 1.47153 1.72103 1.33412 1.21882 0.84094 0.96505 0.99427 1.22117 0.95027 1.03055 0.82573 1.21395 0.74637 0.92113 0.73057 1.93159 1.32034 1.97123 1.94604 1.93099 1.82082 1.84210 1.57574 1.93083 1.93406 1.82735 1.47668 0.91137 0.75674 0.89724 0.88022 0.90042 0.84378 0.87063 0.87079 0.73906 0.90233 0.88382 0.88896 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.59 13.96 21.45 0.30 -49.29 16 2 C 0.06 3.07 5.47 84.66 0.46 3.53 16 3 Si 0.94 40.47 26.03 68.60 1.79 42.26 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.63 5.80 99.48 0.58 -11.05 16 7 C -0.54 -27.47 8.65 25.60 0.22 -27.25 16 8 H 0.06 3.62 7.95 -2.91 -0.02 3.59 16 9 C 0.23 10.45 1.36 44.24 0.06 10.51 16 10 H 0.08 3.70 6.56 -2.39 -0.02 3.68 16 11 N -0.73 -28.28 2.78 -461.41 -1.28 -29.56 16 12 C 0.70 25.28 7.11 179.05 1.27 26.56 16 13 O -0.61 -25.73 14.12 -3.99 -0.06 -25.79 16 14 N -0.63 -17.10 2.94 -835.14 -2.46 -19.56 16 15 C 0.11 2.04 6.63 86.56 0.57 2.61 16 16 C 0.10 1.25 6.52 86.56 0.56 1.81 16 17 N -0.61 -11.05 2.95 -817.16 -2.41 -13.45 16 18 C 0.50 10.63 7.77 87.66 0.68 11.31 16 19 O -0.58 -18.50 15.90 16.02 0.25 -18.25 16 20 C 0.06 0.67 5.87 71.24 0.42 1.09 16 21 O -0.58 -8.92 13.19 -129.94 -1.71 -10.64 16 22 C 0.10 2.21 6.59 86.42 0.57 2.78 16 23 C 0.10 2.24 6.56 86.42 0.57 2.81 16 24 C 0.44 19.15 2.79 71.98 0.20 19.35 16 25 F -0.19 -7.95 15.63 44.97 0.70 -7.25 16 26 F -0.19 -8.33 16.86 44.97 0.76 -7.57 16 27 F -0.19 -7.81 16.97 44.97 0.76 -7.05 16 28 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.40 14.31 6.05 -92.71 -0.56 13.75 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 2.17 6.99 -2.39 -0.02 2.15 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.14 0.51 5.91 -2.39 -0.01 0.50 16 34 H 0.11 0.47 7.72 -2.39 -0.02 0.45 16 35 H 0.11 0.46 7.91 -2.39 -0.02 0.44 16 36 H 0.41 1.23 9.12 -74.06 -0.68 0.55 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 2.26 6.99 -2.39 -0.02 2.25 16 39 H 0.09 2.21 5.62 -2.39 -0.01 2.20 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.58 338.38 2.01 -74.57 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.23 Total: 16.47 kcal Atomic # 6 Polarization: 49.52 SS G_CDS: 5.59 Total: 55.11 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -5.85 Total: -111.87 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -1.52 Total: -54.67 kcal Atomic # 9 Polarization: -24.09 SS G_CDS: 2.22 Total: -21.87 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.79 Total: 42.26 kcal Total: -76.58 2.01 -74.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932908933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.277 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds