Wall clock time and date at job start Tue Mar 31 2020 22:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47060 * 264.64673 * 3 2 1 5 5 H 1.48497 * 109.47255 * 24.64804 * 3 2 1 6 6 H 1.48506 * 109.47180 * 144.64999 * 3 2 1 7 7 C 1.37885 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99930 * 5.03772 * 7 2 1 9 9 C 1.50696 * 119.99755 * 185.03810 * 7 2 1 10 10 H 1.09003 * 109.47260 * 325.30848 * 9 7 2 11 11 N 1.46504 * 109.47082 * 85.30919 * 9 7 2 12 12 C 1.34778 * 119.99841 * 204.99680 * 11 9 7 13 13 O 1.21583 * 120.00294 * 0.02562 * 12 11 9 14 14 N 1.34781 * 119.99517 * 180.02562 * 12 11 9 15 15 C 1.46499 * 119.99589 * 180.27885 * 14 12 11 16 16 C 1.50703 * 109.47161 * 179.72404 * 15 14 12 17 17 O 1.21280 * 119.99811 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00070 * 179.97438 * 16 15 14 19 19 C 1.47152 * 120.98407 * 359.71456 * 18 16 15 20 20 C 1.53716 * 108.16249 * 129.43358 * 19 18 16 21 21 O 1.42955 * 109.14775 * 52.53724 * 20 19 18 22 22 C 1.42965 * 114.16822 * 297.29236 * 21 20 19 23 23 C 1.47151 * 120.98474 * 179.97438 * 18 16 15 24 24 C 1.53001 * 109.47082 * 205.31010 * 9 7 2 25 25 F 1.39903 * 109.47145 * 304.14110 * 24 9 7 26 26 F 1.39896 * 109.47391 * 64.14422 * 24 9 7 27 27 F 1.39901 * 109.47141 * 184.14334 * 24 9 7 28 28 H 0.97002 * 119.99846 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99922 * 24.99906 * 11 9 7 30 30 H 0.96993 * 120.00230 * 359.97438 * 14 12 11 31 31 H 1.09008 * 109.46875 * 299.72059 * 15 14 12 32 32 H 1.08998 * 109.47692 * 59.71896 * 15 14 12 33 33 H 1.08993 * 109.68470 * 249.20975 * 19 18 16 34 34 H 1.09000 * 109.68275 * 9.76970 * 19 18 16 35 35 H 1.09004 * 109.65602 * 292.57592 * 20 19 18 36 36 H 1.08998 * 109.48522 * 172.40718 * 20 19 18 37 37 H 1.09001 * 109.50806 * 302.65455 * 22 21 20 38 38 H 1.09003 * 109.55418 * 182.52918 * 22 21 20 39 39 H 1.09004 * 109.67931 * 350.23688 * 23 18 16 40 40 H 1.08995 * 109.68431 * 110.78284 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6098 1.9811 -1.3940 5 1 1.3947 2.6826 0.5839 6 1 3.4856 1.4754 0.8101 7 6 2.0045 -1.1942 -0.0005 8 1 1.4676 -2.1275 -0.0831 9 6 3.5071 -1.1967 0.1141 10 1 3.9125 -0.3273 -0.4035 11 7 3.8891 -1.1458 1.5275 12 6 5.0884 -0.6444 1.8838 13 8 5.8530 -0.2339 1.0322 14 7 5.4400 -0.5980 3.1841 15 6 6.7410 -0.0474 3.5718 16 6 6.8839 -0.1042 5.0710 17 8 5.9871 -0.5593 5.7488 18 7 8.0083 0.3508 5.6584 19 6 9.1124 0.9016 4.8565 20 6 9.5000 2.2663 5.4483 21 8 9.7459 2.1174 6.8486 22 6 8.6064 1.6945 7.6013 23 6 8.1706 0.3063 7.1202 24 6 4.0647 -2.4730 -0.5193 25 9 3.4728 -3.5890 0.0820 26 9 3.7812 -2.4761 -1.8892 27 9 5.4499 -2.5210 -0.3297 28 1 -0.4850 0.8401 -0.0004 29 1 3.2789 -1.4729 2.2069 30 1 4.8299 -0.9251 3.8634 31 1 7.5357 -0.6324 3.1086 32 1 6.8111 0.9882 3.2391 33 1 9.9667 0.2258 4.8948 34 1 8.7887 1.0268 3.8232 35 1 8.6875 2.9766 5.2949 36 1 10.4014 2.6327 4.9572 37 1 7.7907 2.4027 7.4556 38 1 8.8644 1.6489 8.6594 39 1 7.2229 0.0370 7.5867 40 1 8.9314 -0.4287 7.3830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:39 Heat of formation + Delta-G solvation = -254.712127 kcal Electronic energy + Delta-G solvation = -30570.402163 eV Core-core repulsion = 25584.757396 eV Total energy + Delta-G solvation = -4985.644767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.04143 -46.54925 -46.53640 -40.78605 -39.41843 -38.53832 -35.21099 -35.05786 -34.04001 -32.54821 -31.96636 -29.68465 -28.53064 -26.75692 -24.96075 -24.47639 -22.59249 -21.45529 -20.34038 -19.71644 -18.75919 -17.90426 -17.50488 -17.16086 -16.94562 -16.71389 -16.43806 -16.35207 -16.12311 -15.65692 -15.36685 -15.34160 -14.65909 -14.40931 -14.22507 -13.75649 -13.59946 -13.41678 -13.27526 -13.03431 -12.96817 -12.94261 -12.73872 -12.70578 -12.61067 -12.53511 -12.23911 -11.88246 -11.74781 -11.21143 -11.14006 -10.67064 -10.66579 -10.20440 -10.16123 -9.82505 -9.74376 -9.05851 -8.98505 -8.92764 -8.30418 -6.53492 -4.68438 2.22106 2.29935 3.05405 3.19705 3.21912 3.31920 3.33164 3.61746 3.99018 4.06285 4.11642 4.22945 4.48253 4.56788 4.58413 4.69468 4.77021 4.94740 4.99046 5.13277 5.18209 5.21308 5.24111 5.24936 5.26688 5.30413 5.44369 5.50605 5.91188 6.29219 6.56835 6.59181 6.87280 6.89468 7.19172 7.44518 7.70907 7.91434 8.53098 8.62136 9.02292 9.12555 10.54579 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.003055 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.052952 B = 9163.768476 C = 9852.293708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.100 3.900 3 Si 0.872 3.128 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.537 4.537 8 H 0.095 0.905 9 C 0.223 3.777 10 H 0.088 0.912 11 N -0.726 5.726 12 C 0.698 3.302 13 O -0.596 6.596 14 N -0.744 5.744 15 C 0.125 3.875 16 C 0.515 3.485 17 O -0.530 6.530 18 N -0.617 5.617 19 C 0.068 3.932 20 C 0.046 3.954 21 O -0.380 6.380 22 C 0.048 3.952 23 C 0.077 3.923 24 C 0.440 3.560 25 F -0.190 7.190 26 F -0.185 7.185 27 F -0.194 7.194 28 H 0.275 0.725 29 H 0.398 0.602 30 H 0.405 0.595 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.746 3.594 12.388 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.111 4.111 3 Si 0.697 3.303 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.575 4.575 8 H 0.113 0.887 9 C 0.119 3.881 10 H 0.105 0.895 11 N -0.381 5.381 12 C 0.398 3.602 13 O -0.474 6.474 14 N -0.405 5.405 15 C -0.004 4.004 16 C 0.303 3.697 17 O -0.406 6.406 18 N -0.353 5.353 19 C -0.055 4.055 20 C -0.031 4.031 21 O -0.298 6.298 22 C -0.030 4.030 23 C -0.045 4.045 24 C 0.384 3.616 25 F -0.172 7.172 26 F -0.167 7.167 27 F -0.176 7.176 28 H 0.085 0.915 29 H 0.234 0.766 30 H 0.242 0.758 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.944 3.830 12.017 21.123 hybrid contribution -0.275 0.288 0.411 0.572 sum 16.669 4.118 12.428 21.196 Atomic orbital electron populations 1.69869 1.06474 1.28416 1.44356 1.24988 0.94784 0.99388 0.91902 0.86881 0.80877 0.82561 0.80021 1.19213 1.20809 1.17594 1.20807 0.86456 0.96490 1.53720 0.88722 1.19886 0.97641 0.90272 0.80301 0.89468 1.46867 1.15892 1.65430 1.09931 1.16306 0.83025 0.79018 0.81831 1.90862 1.52505 1.54678 1.49401 1.44903 1.18874 1.69235 1.07492 1.20788 0.88145 1.01340 0.90123 1.20755 0.81298 0.76895 0.90718 1.90701 1.39458 1.45246 1.65230 1.48054 1.16957 1.62905 1.07372 1.22652 0.90358 0.96138 0.96367 1.23086 1.02621 0.95349 0.82062 1.87974 1.34950 1.88131 1.18743 1.23000 0.89143 0.94237 0.96598 1.22305 1.03792 0.98230 0.80214 1.21623 0.74883 0.88318 0.76816 1.93079 1.83963 1.56609 1.83521 1.93097 1.93435 1.96898 1.33243 1.93136 1.32497 1.96997 1.94975 0.91461 0.76643 0.75775 0.88620 0.88850 0.89805 0.88035 0.92243 0.87238 0.92440 0.87441 0.87847 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.59 13.96 55.43 0.77 -22.82 16 2 C 0.10 2.60 5.47 -17.82 -0.10 2.50 16 3 Si 0.87 20.16 26.92 -169.99 -4.58 15.59 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.25 -5.89 6.83 56.52 0.39 -5.50 16 7 C -0.54 -13.77 8.68 -34.44 -0.30 -14.06 16 8 H 0.09 2.63 7.69 -52.49 -0.40 2.22 16 9 C 0.22 5.17 1.45 -69.08 -0.10 5.07 16 10 H 0.09 2.14 5.33 -51.93 -0.28 1.86 16 11 N -0.73 -15.04 4.94 -59.81 -0.30 -15.34 16 12 C 0.70 13.97 7.86 -86.91 -0.68 13.29 16 13 O -0.60 -13.46 14.95 5.29 0.08 -13.38 16 14 N -0.74 -11.98 5.53 -66.41 -0.37 -12.35 16 15 C 0.12 1.59 4.53 -5.19 -0.02 1.57 16 16 C 0.52 6.25 7.78 -10.99 -0.09 6.16 16 17 O -0.53 -8.00 15.14 5.56 0.08 -7.92 16 18 N -0.62 -5.71 3.01 -172.05 -0.52 -6.23 16 19 C 0.07 0.45 6.57 -3.31 -0.02 0.43 16 20 C 0.05 0.29 7.00 37.53 0.26 0.55 16 21 O -0.38 -3.08 10.74 -35.23 -0.38 -3.45 16 22 C 0.05 0.33 6.98 37.29 0.26 0.59 16 23 C 0.08 0.62 6.63 -3.56 -0.02 0.59 16 24 C 0.44 9.88 2.83 37.16 0.11 9.99 16 25 F -0.19 -4.18 16.65 2.25 0.04 -4.15 16 26 F -0.19 -4.18 17.12 2.25 0.04 -4.15 16 27 F -0.19 -4.32 15.57 2.25 0.04 -4.28 16 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.40 7.56 8.61 -40.82 -0.35 7.21 16 30 H 0.41 6.21 7.45 -40.82 -0.30 5.90 16 31 H 0.10 1.14 8.00 -51.92 -0.42 0.72 16 32 H 0.09 1.12 7.67 -51.93 -0.40 0.72 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.60 6.05 -51.93 -0.31 0.28 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.92 7.08 -51.93 -0.37 0.56 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -32.31 346.37 -5.09 -37.40 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.52 Total: 9.18 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: -0.71 Total: 26.68 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.41 Total: -56.73 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.22 Total: -24.76 kcal Atomic # 9 Polarization: -12.68 SS G_CDS: 0.11 Total: -12.57 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.58 Total: 15.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.31 -5.09 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.315 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds