Wall clock time and date at job start Tue Mar 31 2020 22:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47060 * 264.64673 * 3 2 1 5 5 H 1.48497 * 109.47255 * 24.64804 * 3 2 1 6 6 H 1.48506 * 109.47180 * 144.64999 * 3 2 1 7 7 C 1.37885 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99930 * 5.03772 * 7 2 1 9 9 C 1.50696 * 119.99755 * 185.03810 * 7 2 1 10 10 H 1.09003 * 109.47260 * 325.30848 * 9 7 2 11 11 N 1.46504 * 109.47082 * 85.30919 * 9 7 2 12 12 C 1.34778 * 119.99841 * 204.99680 * 11 9 7 13 13 O 1.21583 * 120.00294 * 0.02562 * 12 11 9 14 14 N 1.34781 * 119.99517 * 180.02562 * 12 11 9 15 15 C 1.46499 * 119.99589 * 180.27885 * 14 12 11 16 16 C 1.50703 * 109.47161 * 179.72404 * 15 14 12 17 17 O 1.21280 * 119.99811 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00070 * 179.97438 * 16 15 14 19 19 C 1.47152 * 120.98407 * 359.71456 * 18 16 15 20 20 C 1.53716 * 108.16249 * 129.43358 * 19 18 16 21 21 O 1.42955 * 109.14775 * 52.53724 * 20 19 18 22 22 C 1.42965 * 114.16822 * 297.29236 * 21 20 19 23 23 C 1.47151 * 120.98474 * 179.97438 * 18 16 15 24 24 C 1.53001 * 109.47082 * 205.31010 * 9 7 2 25 25 F 1.39903 * 109.47145 * 304.14110 * 24 9 7 26 26 F 1.39896 * 109.47391 * 64.14422 * 24 9 7 27 27 F 1.39901 * 109.47141 * 184.14334 * 24 9 7 28 28 H 0.97002 * 119.99846 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99922 * 24.99906 * 11 9 7 30 30 H 0.96993 * 120.00230 * 359.97438 * 14 12 11 31 31 H 1.09008 * 109.46875 * 299.72059 * 15 14 12 32 32 H 1.08998 * 109.47692 * 59.71896 * 15 14 12 33 33 H 1.08993 * 109.68470 * 249.20975 * 19 18 16 34 34 H 1.09000 * 109.68275 * 9.76970 * 19 18 16 35 35 H 1.09004 * 109.65602 * 292.57592 * 20 19 18 36 36 H 1.08998 * 109.48522 * 172.40718 * 20 19 18 37 37 H 1.09001 * 109.50806 * 302.65455 * 22 21 20 38 38 H 1.09003 * 109.55418 * 182.52918 * 22 21 20 39 39 H 1.09004 * 109.67931 * 350.23688 * 23 18 16 40 40 H 1.08995 * 109.68431 * 110.78284 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6098 1.9811 -1.3940 5 1 1.3947 2.6826 0.5839 6 1 3.4856 1.4754 0.8101 7 6 2.0045 -1.1942 -0.0005 8 1 1.4676 -2.1275 -0.0831 9 6 3.5071 -1.1967 0.1141 10 1 3.9125 -0.3273 -0.4035 11 7 3.8891 -1.1458 1.5275 12 6 5.0884 -0.6444 1.8838 13 8 5.8530 -0.2339 1.0322 14 7 5.4400 -0.5980 3.1841 15 6 6.7410 -0.0474 3.5718 16 6 6.8839 -0.1042 5.0710 17 8 5.9871 -0.5593 5.7488 18 7 8.0083 0.3508 5.6584 19 6 9.1124 0.9016 4.8565 20 6 9.5000 2.2663 5.4483 21 8 9.7459 2.1174 6.8486 22 6 8.6064 1.6945 7.6013 23 6 8.1706 0.3063 7.1202 24 6 4.0647 -2.4730 -0.5193 25 9 3.4728 -3.5890 0.0820 26 9 3.7812 -2.4761 -1.8892 27 9 5.4499 -2.5210 -0.3297 28 1 -0.4850 0.8401 -0.0004 29 1 3.2789 -1.4729 2.2069 30 1 4.8299 -0.9251 3.8634 31 1 7.5357 -0.6324 3.1086 32 1 6.8111 0.9882 3.2391 33 1 9.9667 0.2258 4.8948 34 1 8.7887 1.0268 3.8232 35 1 8.6875 2.9766 5.2949 36 1 10.4014 2.6327 4.9572 37 1 7.7907 2.4027 7.4556 38 1 8.8644 1.6489 8.6594 39 1 7.2229 0.0370 7.5867 40 1 8.9314 -0.4287 7.3830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:38 Heat of formation + Delta-G solvation = -280.161401 kcal Electronic energy + Delta-G solvation = -30571.505726 eV Core-core repulsion = 25584.757396 eV Total energy + Delta-G solvation = -4986.748330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.85796 -48.36239 -48.34923 -41.68802 -40.79790 -39.39377 -36.77604 -35.95827 -35.47619 -34.46374 -32.59656 -31.20583 -29.54197 -27.76427 -26.89290 -25.08287 -23.55276 -22.96282 -21.91151 -20.63532 -20.31599 -19.45470 -19.22663 -18.67433 -18.38675 -18.06922 -17.69131 -17.31038 -17.10534 -16.68207 -16.33666 -16.12372 -16.04720 -15.71649 -15.45813 -15.31273 -15.21276 -14.88697 -14.78862 -14.69146 -14.54674 -14.49664 -14.47877 -14.29037 -13.80380 -13.54108 -13.48714 -12.98905 -12.84704 -12.53724 -12.38241 -12.01933 -11.84020 -11.81221 -11.44051 -11.30704 -11.06678 -10.97983 -10.43064 -9.91656 -9.72570 -8.54550 -6.73700 1.23595 1.29481 1.34452 1.38072 1.46366 1.84850 1.95276 2.18763 2.27556 2.83335 2.84185 3.14462 3.20460 3.35366 3.38539 3.69354 3.73771 3.92856 4.07995 4.11925 4.20418 4.24698 4.28958 4.42729 4.45509 4.63046 4.73500 4.81799 4.90422 4.94241 5.20004 5.33614 5.48182 5.81134 6.04191 6.07014 6.07997 6.44764 6.81456 6.99823 7.07336 7.54293 8.57503 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.003055 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.052952 B = 9163.768476 C = 9852.293708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.927 3.073 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.232 3.768 10 H 0.079 0.921 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.620 6.620 14 N -0.734 5.734 15 C 0.122 3.878 16 C 0.517 3.483 17 O -0.567 6.567 18 N -0.611 5.611 19 C 0.063 3.937 20 C 0.045 3.955 21 O -0.393 6.393 22 C 0.051 3.949 23 C 0.075 3.925 24 C 0.442 3.558 25 F -0.188 7.188 26 F -0.186 7.186 27 F -0.190 7.190 28 H 0.280 0.720 29 H 0.407 0.593 30 H 0.410 0.590 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.052 0.948 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.894 4.600 13.215 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.126 3.874 10 H 0.097 0.903 11 N -0.383 5.383 12 C 0.399 3.601 13 O -0.501 6.501 14 N -0.394 5.394 15 C -0.006 4.006 16 C 0.306 3.694 17 O -0.446 6.446 18 N -0.345 5.345 19 C -0.059 4.059 20 C -0.032 4.032 21 O -0.312 6.312 22 C -0.026 4.026 23 C -0.047 4.047 24 C 0.386 3.614 25 F -0.169 7.169 26 F -0.168 7.168 27 F -0.171 7.171 28 H 0.090 0.910 29 H 0.243 0.757 30 H 0.248 0.752 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.110 0.890 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.139 4.846 12.889 23.577 hybrid contribution -0.841 -0.080 0.205 0.870 sum 18.297 4.766 13.094 22.999 Atomic orbital electron populations 1.69941 1.07774 1.29424 1.46102 1.25567 0.95252 1.02013 0.91567 0.86020 0.79572 0.79392 0.79962 1.18935 1.20040 1.17807 1.20735 0.87605 0.95426 1.53994 0.91629 1.19575 0.96056 0.90351 0.81375 0.90296 1.46380 1.16781 1.65993 1.09110 1.16248 0.82351 0.78723 0.82812 1.90845 1.53038 1.55736 1.50437 1.44785 1.20144 1.68370 1.06063 1.21004 0.86635 1.02042 0.90896 1.20600 0.81723 0.76912 0.90214 1.90690 1.40926 1.47273 1.65714 1.48141 1.16574 1.61550 1.08252 1.22894 0.89820 0.96629 0.96515 1.23230 1.03663 0.94924 0.81431 1.87963 1.35460 1.88111 1.19632 1.23046 0.88818 0.93107 0.97610 1.22425 1.03564 0.99439 0.79314 1.21499 0.75040 0.88184 0.76723 1.93084 1.83968 1.56405 1.83475 1.93094 1.93467 1.96901 1.33340 1.93142 1.32084 1.96974 1.94949 0.91028 0.75676 0.75243 0.87315 0.87636 0.88452 0.87101 0.92506 0.85033 0.92943 0.85408 0.89037 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.74 13.96 21.45 0.30 -49.44 16 2 C 0.06 3.27 5.47 84.66 0.46 3.73 16 3 Si 0.93 41.21 26.92 68.60 1.85 43.05 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.25 -11.30 6.83 99.48 0.68 -10.62 16 7 C -0.54 -27.84 8.68 25.60 0.22 -27.62 16 8 H 0.07 3.73 7.69 -2.91 -0.02 3.70 16 9 C 0.23 10.63 1.45 44.24 0.06 10.69 16 10 H 0.08 3.79 5.33 -2.39 -0.01 3.78 16 11 N -0.73 -29.42 4.94 -461.40 -2.28 -31.70 16 12 C 0.70 26.87 7.86 179.05 1.41 28.28 16 13 O -0.62 -26.88 14.95 -3.98 -0.06 -26.94 16 14 N -0.73 -22.44 5.53 -482.28 -2.67 -25.11 16 15 C 0.12 2.85 4.53 85.63 0.39 3.24 16 16 C 0.52 11.74 7.78 87.66 0.68 12.43 16 17 O -0.57 -16.66 15.14 -3.03 -0.05 -16.71 16 18 N -0.61 -10.12 3.01 -816.64 -2.46 -12.58 16 19 C 0.06 0.67 6.57 86.50 0.57 1.24 16 20 C 0.04 0.44 7.00 72.22 0.51 0.95 16 21 O -0.39 -5.42 10.74 -148.98 -1.60 -7.02 16 22 C 0.05 0.60 6.98 72.07 0.50 1.10 16 23 C 0.07 1.07 6.63 86.34 0.57 1.64 16 24 C 0.44 19.55 2.83 71.98 0.20 19.75 16 25 F -0.19 -8.17 16.65 44.97 0.75 -7.42 16 26 F -0.19 -8.32 17.12 44.97 0.77 -7.55 16 27 F -0.19 -8.18 15.57 44.97 0.70 -7.48 16 28 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.41 15.16 8.61 -92.71 -0.80 14.37 16 30 H 0.41 12.05 7.45 -92.71 -0.69 11.36 16 31 H 0.11 2.31 8.00 -2.38 -0.02 2.29 16 32 H 0.11 2.26 7.67 -2.39 -0.02 2.25 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.98 6.05 -2.39 -0.01 0.97 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 1.56 7.08 -2.38 -0.02 1.55 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -67.90 346.37 0.44 -67.46 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.39 Total: 26.01 kcal Atomic # 6 Polarization: 49.86 SS G_CDS: 5.58 Total: 55.44 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -7.11 Total: -118.83 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.71 Total: -50.67 kcal Atomic # 9 Polarization: -24.68 SS G_CDS: 2.22 Total: -22.46 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.85 Total: 43.05 kcal Total: -67.90 0.44 -67.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.705 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds