Wall clock time and date at job start Tue Mar 31 2020 22:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 120.00267 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99650 * 3 2 1 7 7 C 1.37879 * 119.99619 * 180.27282 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.75664 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76255 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21583 * 119.99880 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.46505 * 119.99644 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46982 * 180.02562 * 15 14 12 17 17 O 1.21285 * 120.00070 * 0.02562 * 16 15 14 18 18 N 1.34768 * 119.99935 * 180.02562 * 16 15 14 19 19 C 1.47149 * 120.98386 * 359.71668 * 18 16 15 20 20 C 1.53716 * 108.16288 * 129.43287 * 19 18 16 21 21 O 1.42955 * 109.15027 * 52.53834 * 20 19 18 22 22 C 1.42967 * 114.16927 * 297.29277 * 21 20 19 23 23 C 1.47154 * 120.98516 * 180.02562 * 18 16 15 24 24 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 25 25 F 1.39895 * 109.47124 * 54.83140 * 24 9 7 26 26 F 1.39896 * 109.47342 * 174.83935 * 24 9 7 27 27 F 1.39903 * 109.47058 * 294.83544 * 24 9 7 28 28 H 0.97007 * 120.00535 * 175.54333 * 1 2 3 29 29 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 30 30 H 0.96998 * 120.00335 * 0.02562 * 14 12 11 31 31 H 1.08992 * 109.47280 * 300.00508 * 15 14 12 32 32 H 1.08999 * 109.46480 * 60.00638 * 15 14 12 33 33 H 1.08999 * 109.68809 * 249.21230 * 19 18 16 34 34 H 1.08999 * 109.67816 * 9.76997 * 19 18 16 35 35 H 1.09002 * 109.65475 * 292.57587 * 20 19 18 36 36 H 1.09001 * 109.48373 * 172.40440 * 20 19 18 37 37 H 1.08995 * 109.50662 * 302.65718 * 22 21 20 38 38 H 1.08992 * 109.55658 * 182.52552 * 22 21 20 39 39 H 1.09002 * 109.68083 * 350.23674 * 23 18 16 40 40 H 1.08998 * 109.68604 * 110.78723 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0318 -1.2260 0.3256 9 6 1.3244 -2.4546 -0.4743 10 1 0.4045 -2.6029 0.0913 11 7 2.2163 -3.5976 -0.2645 12 6 1.7029 -4.8354 -0.1198 13 8 0.4995 -5.0033 -0.1638 14 7 2.5235 -5.8870 0.0727 15 6 1.9654 -7.2324 0.2306 16 6 3.0854 -8.2205 0.4313 17 8 4.2365 -7.8385 0.4418 18 7 2.8080 -9.5286 0.5989 19 6 1.4191 -10.0148 0.5960 20 6 1.3265 -11.1945 -0.3851 21 8 2.3342 -12.1550 -0.0601 22 6 3.6717 -11.6668 -0.1891 23 6 3.8846 -10.5120 0.7971 24 6 0.9935 -2.3324 -1.9631 25 9 2.1574 -2.0249 -2.6758 26 9 0.4699 -3.5444 -2.4255 27 9 0.0505 -1.3158 -2.1493 28 1 -0.4851 -0.8375 -0.0653 29 1 3.1764 -3.4637 -0.2298 30 1 3.4836 -5.7531 0.1074 31 1 1.3043 -7.2521 1.0969 32 1 1.4012 -7.4987 -0.6632 33 1 1.1434 -10.3444 1.5977 34 1 0.7511 -9.2156 0.2750 35 1 1.4792 -10.8372 -1.4036 36 1 0.3429 -11.6574 -0.3053 37 1 3.8328 -11.3112 -1.2067 38 1 4.3758 -12.4688 0.0322 39 1 4.8501 -10.0422 0.6094 40 1 3.8525 -10.8907 1.8187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:41 Heat of formation + Delta-G solvation = -251.336144 kcal Electronic energy + Delta-G solvation = -30501.077652 eV Core-core repulsion = 25515.579279 eV Total energy + Delta-G solvation = -4985.498374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.76071 -46.29603 -46.22854 -40.83144 -39.49909 -38.58363 -35.25253 -35.15556 -34.14511 -32.68673 -31.97615 -29.35151 -28.18617 -26.65589 -24.50475 -24.45903 -22.65531 -21.79784 -20.46303 -19.76464 -18.77497 -17.71363 -17.32519 -17.12003 -16.94507 -16.84909 -16.61681 -16.29876 -16.00811 -15.69056 -15.42604 -15.02552 -14.72654 -14.37158 -13.89549 -13.81850 -13.53087 -13.26606 -13.19931 -13.01292 -12.91079 -12.72709 -12.63807 -12.55991 -12.43776 -12.29344 -12.24028 -11.90552 -11.34125 -11.23785 -11.04702 -10.80158 -10.69434 -10.22839 -10.20163 -9.80320 -9.48719 -9.10721 -9.00232 -8.44734 -8.37151 -6.75184 -4.51150 2.16984 2.25145 3.06761 3.30904 3.31661 3.38095 3.55135 3.58398 4.01113 4.19287 4.20581 4.30848 4.45882 4.55623 4.65212 4.67541 4.74492 4.92759 4.96666 5.10992 5.17882 5.18598 5.23718 5.27647 5.41648 5.47223 5.59657 5.72429 5.87307 6.45608 6.57008 6.57339 6.83625 7.01489 7.16685 7.51606 7.65867 8.09189 8.41610 8.50132 9.00350 9.20311 10.61820 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.002532 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.445301 B =11055.472221 C =11478.479276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 1.072 2.928 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.638 4.638 8 H 0.074 0.926 9 C 0.252 3.748 10 H 0.080 0.920 11 N -0.717 5.717 12 C 0.704 3.296 13 O -0.587 6.587 14 N -0.743 5.743 15 C 0.125 3.875 16 C 0.516 3.484 17 O -0.532 6.532 18 N -0.616 5.616 19 C 0.067 3.933 20 C 0.046 3.954 21 O -0.380 6.380 22 C 0.048 3.952 23 C 0.077 3.923 24 C 0.413 3.587 25 F -0.195 7.195 26 F -0.206 7.206 27 F -0.178 7.178 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.405 0.595 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -20.662 0.699 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.173 4.173 3 Si 0.898 3.102 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.674 4.674 8 H 0.092 0.908 9 C 0.145 3.855 10 H 0.098 0.902 11 N -0.370 5.370 12 C 0.403 3.597 13 O -0.465 6.465 14 N -0.403 5.403 15 C -0.003 4.003 16 C 0.304 3.696 17 O -0.408 6.408 18 N -0.352 5.352 19 C -0.056 4.056 20 C -0.031 4.031 21 O -0.298 6.298 22 C -0.030 4.030 23 C -0.046 4.046 24 C 0.357 3.643 25 F -0.177 7.177 26 F -0.188 7.188 27 F -0.159 7.159 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.242 0.758 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.431 -19.139 0.754 19.660 hybrid contribution 1.010 -1.397 -0.470 1.787 sum 5.441 -20.536 0.284 21.246 Atomic orbital electron populations 1.70750 1.07134 1.32427 1.38329 1.26000 0.95981 1.02995 0.92309 0.83495 0.75142 0.74484 0.77053 1.20363 1.21006 1.20708 1.21677 1.01782 0.91475 1.52497 0.90826 1.19623 0.94285 0.85895 0.85679 0.90250 1.45053 1.10663 1.04926 1.76313 1.15936 0.85247 0.80623 0.77853 1.90906 1.12795 1.84516 1.58305 1.44731 1.10465 1.04881 1.80218 1.20796 0.93846 0.81601 1.04070 1.20720 0.90619 0.82645 0.75621 1.90700 1.21806 1.77909 1.50386 1.48048 1.07733 1.06622 1.72800 1.22666 0.82596 0.98579 1.01726 1.23088 0.92912 0.89677 0.97437 1.87978 1.14645 1.37715 1.89445 1.23013 0.84556 0.96821 0.98583 1.22332 0.92411 0.89552 1.00259 1.23127 0.73701 0.72420 0.95041 1.93025 1.49978 1.93147 1.81507 1.93087 1.87415 1.46834 1.91427 1.93144 1.65846 1.60768 1.96192 0.90925 0.76725 0.75789 0.88520 0.88615 0.89749 0.88000 0.92219 0.87188 0.92436 0.87429 0.87855 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.32 12.43 55.43 0.69 -23.63 16 2 C 0.04 1.06 4.72 -17.82 -0.08 0.97 16 3 Si 1.07 23.63 29.95 -169.99 -5.09 18.54 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.64 -16.50 8.21 -34.44 -0.28 -16.78 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.25 6.23 1.92 -69.09 -0.13 6.10 16 10 H 0.08 2.17 6.61 -51.93 -0.34 1.82 16 11 N -0.72 -14.88 5.03 -59.82 -0.30 -15.18 16 12 C 0.70 13.99 7.98 -86.91 -0.69 13.30 16 13 O -0.59 -13.49 14.96 5.29 0.08 -13.41 16 14 N -0.74 -11.48 5.53 -66.41 -0.37 -11.85 16 15 C 0.13 1.54 4.53 -5.19 -0.02 1.51 16 16 C 0.52 5.99 7.78 -10.99 -0.09 5.91 16 17 O -0.53 -7.72 15.14 5.55 0.08 -7.64 16 18 N -0.62 -5.46 3.01 -171.99 -0.52 -5.98 16 19 C 0.07 0.43 6.57 -3.32 -0.02 0.41 16 20 C 0.05 0.28 7.00 37.53 0.26 0.54 16 21 O -0.38 -2.97 10.74 -35.23 -0.38 -3.35 16 22 C 0.05 0.31 6.99 37.33 0.26 0.57 16 23 C 0.08 0.59 6.64 -3.51 -0.02 0.56 16 24 C 0.41 10.34 2.82 37.16 0.10 10.45 16 25 F -0.19 -4.74 16.87 2.25 0.04 -4.70 16 26 F -0.21 -5.04 15.54 2.25 0.04 -5.01 16 27 F -0.18 -4.74 14.13 2.25 0.03 -4.71 16 28 H 0.28 8.04 6.04 -40.82 -0.25 7.79 16 29 H 0.40 7.31 8.54 -40.82 -0.35 6.96 16 30 H 0.41 5.89 7.45 -40.82 -0.30 5.58 16 31 H 0.10 1.11 8.01 -51.93 -0.42 0.69 16 32 H 0.10 1.10 7.67 -51.93 -0.40 0.70 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.57 6.05 -51.93 -0.31 0.25 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.88 7.08 -51.93 -0.37 0.51 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.47 343.91 -5.72 -39.18 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.48 Total: 9.01 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: -0.72 Total: 23.53 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.50 Total: -56.64 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.22 Total: -24.39 kcal Atomic # 9 Polarization: -14.52 SS G_CDS: 0.10 Total: -14.41 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.09 Total: 18.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.47 -5.72 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.154 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds