Wall clock time and date at job start Tue Mar 31 2020 22:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 120.00267 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99650 * 3 2 1 7 7 C 1.37879 * 119.99619 * 180.27282 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.75664 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76255 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21583 * 119.99880 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99680 * 179.97438 * 12 11 9 15 15 C 1.46505 * 119.99644 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46982 * 180.02562 * 15 14 12 17 17 O 1.21285 * 120.00070 * 0.02562 * 16 15 14 18 18 N 1.34768 * 119.99935 * 180.02562 * 16 15 14 19 19 C 1.47149 * 120.98386 * 359.71668 * 18 16 15 20 20 C 1.53716 * 108.16288 * 129.43287 * 19 18 16 21 21 O 1.42955 * 109.15027 * 52.53834 * 20 19 18 22 22 C 1.42967 * 114.16927 * 297.29277 * 21 20 19 23 23 C 1.47154 * 120.98516 * 180.02562 * 18 16 15 24 24 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 25 25 F 1.39895 * 109.47124 * 54.83140 * 24 9 7 26 26 F 1.39896 * 109.47342 * 174.83935 * 24 9 7 27 27 F 1.39903 * 109.47058 * 294.83544 * 24 9 7 28 28 H 0.97007 * 120.00535 * 175.54333 * 1 2 3 29 29 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 30 30 H 0.96998 * 120.00335 * 0.02562 * 14 12 11 31 31 H 1.08992 * 109.47280 * 300.00508 * 15 14 12 32 32 H 1.08999 * 109.46480 * 60.00638 * 15 14 12 33 33 H 1.08999 * 109.68809 * 249.21230 * 19 18 16 34 34 H 1.08999 * 109.67816 * 9.76997 * 19 18 16 35 35 H 1.09002 * 109.65475 * 292.57587 * 20 19 18 36 36 H 1.09001 * 109.48373 * 172.40440 * 20 19 18 37 37 H 1.08995 * 109.50662 * 302.65718 * 22 21 20 38 38 H 1.08992 * 109.55658 * 182.52552 * 22 21 20 39 39 H 1.09002 * 109.68083 * 350.23674 * 23 18 16 40 40 H 1.08998 * 109.68604 * 110.78723 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0318 -1.2260 0.3256 9 6 1.3244 -2.4546 -0.4743 10 1 0.4045 -2.6029 0.0913 11 7 2.2163 -3.5976 -0.2645 12 6 1.7029 -4.8354 -0.1198 13 8 0.4995 -5.0033 -0.1638 14 7 2.5235 -5.8870 0.0727 15 6 1.9654 -7.2324 0.2306 16 6 3.0854 -8.2205 0.4313 17 8 4.2365 -7.8385 0.4418 18 7 2.8080 -9.5286 0.5989 19 6 1.4191 -10.0148 0.5960 20 6 1.3265 -11.1945 -0.3851 21 8 2.3342 -12.1550 -0.0601 22 6 3.6717 -11.6668 -0.1891 23 6 3.8846 -10.5120 0.7971 24 6 0.9935 -2.3324 -1.9631 25 9 2.1574 -2.0249 -2.6758 26 9 0.4699 -3.5444 -2.4255 27 9 0.0505 -1.3158 -2.1493 28 1 -0.4851 -0.8375 -0.0653 29 1 3.1764 -3.4637 -0.2298 30 1 3.4836 -5.7531 0.1074 31 1 1.3043 -7.2521 1.0969 32 1 1.4012 -7.4987 -0.6632 33 1 1.1434 -10.3444 1.5977 34 1 0.7511 -9.2156 0.2750 35 1 1.4792 -10.8372 -1.4036 36 1 0.3429 -11.6574 -0.3053 37 1 3.8328 -11.3112 -1.2067 38 1 4.3758 -12.4688 0.0322 39 1 4.8501 -10.0422 0.6094 40 1 3.8525 -10.8907 1.8187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:41 Heat of formation + Delta-G solvation = -277.236931 kcal Electronic energy + Delta-G solvation = -30502.200795 eV Core-core repulsion = 25515.579279 eV Total energy + Delta-G solvation = -4986.621516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.78716 -48.31352 -48.26743 -41.73072 -40.87287 -39.41232 -36.93615 -35.97740 -35.57331 -34.55851 -32.58237 -30.67386 -29.38974 -27.73864 -26.50436 -25.10405 -23.89954 -23.12448 -22.04313 -20.67332 -20.23202 -19.44013 -19.12276 -18.95114 -18.47676 -18.13304 -17.53510 -17.22902 -17.06442 -16.68932 -16.13354 -16.10134 -15.86601 -15.64975 -15.60222 -15.29425 -15.20140 -14.84686 -14.74676 -14.66633 -14.59209 -14.47217 -14.38840 -14.25440 -13.75970 -13.50234 -13.26681 -12.98980 -12.85988 -12.54084 -12.39284 -11.91372 -11.83289 -11.50643 -11.39846 -11.31938 -11.09127 -10.53087 -10.45961 -10.01323 -9.74526 -8.84557 -6.61185 1.26317 1.27172 1.57059 1.64189 1.82533 1.85203 1.94839 2.26003 2.49589 2.83370 2.91860 3.10872 3.17015 3.44791 3.59811 3.68410 3.76883 3.91431 4.07241 4.09873 4.17870 4.22510 4.26584 4.43700 4.58347 4.62295 4.72658 4.81016 4.89378 5.15068 5.25885 5.27786 5.32396 5.88223 6.02885 6.06363 6.07155 6.31501 6.78222 6.95781 7.16617 7.45301 8.51383 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.002532 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.445301 B =11055.472221 C =11478.479276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C -0.004 4.004 3 Si 1.115 2.885 4 H -0.284 1.284 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.643 4.643 8 H 0.084 0.916 9 C 0.259 3.741 10 H 0.049 0.951 11 N -0.715 5.715 12 C 0.703 3.297 13 O -0.620 6.620 14 N -0.728 5.728 15 C 0.122 3.878 16 C 0.519 3.481 17 O -0.566 6.566 18 N -0.610 5.610 19 C 0.063 3.937 20 C 0.045 3.955 21 O -0.393 6.393 22 C 0.051 3.949 23 C 0.075 3.925 24 C 0.414 3.586 25 F -0.189 7.189 26 F -0.203 7.203 27 F -0.189 7.189 28 H 0.264 0.736 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.057 0.943 36 H 0.131 0.869 37 H 0.053 0.947 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -21.725 0.920 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.211 4.211 3 Si 0.935 3.065 4 H -0.209 1.209 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.679 4.679 8 H 0.102 0.898 9 C 0.150 3.850 10 H 0.067 0.933 11 N -0.369 5.369 12 C 0.402 3.598 13 O -0.500 6.500 14 N -0.387 5.387 15 C -0.006 4.006 16 C 0.307 3.693 17 O -0.445 6.445 18 N -0.344 5.344 19 C -0.059 4.059 20 C -0.032 4.032 21 O -0.312 6.312 22 C -0.026 4.026 23 C -0.047 4.047 24 C 0.358 3.642 25 F -0.171 7.171 26 F -0.185 7.185 27 F -0.171 7.171 28 H 0.075 0.925 29 H 0.247 0.753 30 H 0.250 0.750 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.523 -20.293 0.989 21.055 hybrid contribution 0.664 -1.222 -0.538 1.491 sum 6.186 -21.516 0.451 22.392 Atomic orbital electron populations 1.70868 1.08186 1.31531 1.40837 1.27378 0.95970 1.06453 0.91286 0.82975 0.74394 0.70732 0.78444 1.20934 1.18487 1.19483 1.21960 1.02169 0.91813 1.51910 0.89762 1.19238 0.93683 0.87049 0.85024 0.93298 1.44845 1.10810 1.04559 1.76653 1.16013 0.85116 0.80977 0.77652 1.90883 1.14356 1.85003 1.59781 1.44606 1.10380 1.05088 1.78635 1.21013 0.94354 0.80088 1.05123 1.20526 0.89708 0.83416 0.75630 1.90687 1.22810 1.78640 1.52412 1.48135 1.09268 1.05859 1.71178 1.22897 0.81212 0.99042 1.02769 1.23224 0.93567 0.89371 0.97064 1.87966 1.15232 1.38497 1.89489 1.23069 0.84650 0.96950 0.97938 1.22458 0.91563 0.89429 1.01296 1.23088 0.73629 0.72236 0.95268 1.93028 1.49547 1.93117 1.81381 1.93087 1.87413 1.46567 1.91398 1.93122 1.66359 1.61323 1.96266 0.92512 0.75292 0.75040 0.87403 0.87549 0.88453 0.87188 0.92447 0.85087 0.92862 0.85368 0.88902 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.75 12.43 21.45 0.27 -50.48 16 2 C 0.00 -0.23 4.72 84.66 0.40 0.17 16 3 Si 1.11 46.42 29.95 68.60 2.05 48.48 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.64 -32.86 8.21 25.60 0.21 -32.65 16 8 H 0.08 4.06 7.81 -2.91 -0.02 4.03 16 9 C 0.26 12.83 1.92 44.24 0.09 12.91 16 10 H 0.05 2.76 6.61 -2.39 -0.02 2.74 16 11 N -0.72 -29.34 5.03 -461.42 -2.32 -31.66 16 12 C 0.70 27.59 7.98 179.05 1.43 29.02 16 13 O -0.62 -28.44 14.96 -3.98 -0.06 -28.50 16 14 N -0.73 -21.78 5.53 -482.30 -2.67 -24.45 16 15 C 0.12 2.82 4.53 85.63 0.39 3.21 16 16 C 0.52 11.45 7.78 87.66 0.68 12.13 16 17 O -0.57 -16.05 15.14 -3.05 -0.05 -16.09 16 18 N -0.61 -9.85 3.01 -816.46 -2.46 -12.31 16 19 C 0.06 0.67 6.57 86.50 0.57 1.24 16 20 C 0.04 0.44 7.00 72.22 0.51 0.95 16 21 O -0.39 -5.34 10.74 -148.98 -1.60 -6.94 16 22 C 0.05 0.57 6.99 72.10 0.50 1.08 16 23 C 0.07 1.03 6.64 86.37 0.57 1.60 16 24 C 0.41 20.73 2.82 71.98 0.20 20.93 16 25 F -0.19 -9.03 16.87 44.97 0.76 -8.27 16 26 F -0.20 -9.92 15.54 44.97 0.70 -9.23 16 27 F -0.19 -10.19 14.13 44.97 0.64 -9.55 16 28 H 0.26 15.67 6.04 -92.70 -0.56 15.11 16 29 H 0.41 14.62 8.54 -92.71 -0.79 13.83 16 30 H 0.41 11.52 7.45 -92.71 -0.69 10.83 16 31 H 0.11 2.31 8.01 -2.39 -0.02 2.29 16 32 H 0.11 2.29 7.67 -2.39 -0.02 2.27 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 1.00 6.05 -2.39 -0.01 0.98 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 38 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.51 7.08 -2.39 -0.02 1.49 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -71.24 343.91 0.66 -70.58 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.15 Total: 27.84 kcal Atomic # 6 Polarization: 45.04 SS G_CDS: 5.55 Total: 50.59 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -7.18 Total: -118.91 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -1.71 Total: -51.53 kcal Atomic # 9 Polarization: -29.14 SS G_CDS: 2.09 Total: -27.05 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.05 Total: 48.48 kcal Total: -71.24 0.66 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.658 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds