Wall clock time and date at job start Tue Mar 31 2020 22:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48489 * 109.47526 * 264.65301 * 3 2 1 5 5 H 1.48501 * 109.47102 * 24.65759 * 3 2 1 6 6 H 1.48498 * 109.46774 * 144.65045 * 3 2 1 7 7 C 1.37875 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99736 * 5.03925 * 7 2 1 9 9 C 1.50704 * 119.99791 * 185.03494 * 7 2 1 10 10 H 1.08999 * 109.47149 * 325.30990 * 9 7 2 11 11 N 1.46500 * 109.47031 * 85.30868 * 9 7 2 12 12 C 1.34771 * 120.00117 * 204.99949 * 11 9 7 13 13 O 1.21592 * 119.99768 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00066 * 179.97438 * 12 11 9 15 15 C 1.46501 * 119.99869 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47003 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47092 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.46886 * 179.97438 * 17 16 15 19 19 C 1.47094 * 125.55652 * 89.99903 * 18 17 16 20 20 C 1.54087 * 103.77487 * 179.97438 * 19 18 17 21 21 O 1.45710 * 104.01023 * 0.02562 * 20 19 18 22 22 C 1.33771 * 109.47222 * 359.75798 * 21 20 19 23 23 O 1.21511 * 123.07175 * 180.24791 * 22 21 20 24 24 C 1.52999 * 109.46989 * 205.30845 * 9 7 2 25 25 F 1.39905 * 109.47234 * 304.14191 * 24 9 7 26 26 F 1.39896 * 109.47154 * 64.14247 * 24 9 7 27 27 F 1.39897 * 109.47137 * 184.14453 * 24 9 7 28 28 H 0.96997 * 120.00165 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99933 * 24.99725 * 11 9 7 30 30 H 0.96997 * 120.00158 * 0.02562 * 14 12 11 31 31 H 1.08993 * 109.47479 * 300.00511 * 15 14 12 32 32 H 1.09000 * 109.46968 * 60.00561 * 15 14 12 33 33 H 1.09002 * 109.46963 * 300.00073 * 16 15 14 34 34 H 1.08995 * 109.47480 * 60.00087 * 16 15 14 35 35 H 1.08992 * 109.46895 * 299.99805 * 17 16 15 36 36 H 1.09000 * 109.47209 * 60.00287 * 17 16 15 37 37 H 1.08993 * 110.56546 * 298.54934 * 19 18 17 38 38 H 1.09000 * 110.56032 * 61.41002 * 19 18 17 39 39 H 1.08999 * 110.52440 * 118.63458 * 20 19 18 40 40 H 1.09000 * 110.52668 * 241.23544 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6096 1.9813 -1.3938 5 1 1.3946 2.6827 0.5841 6 1 3.4855 1.4755 0.8100 7 6 2.0046 -1.1940 -0.0005 8 1 1.4677 -2.1274 -0.0831 9 6 3.5072 -1.1965 0.1140 10 1 3.9125 -0.3270 -0.4035 11 7 3.8893 -1.1455 1.5274 12 6 5.0885 -0.6440 1.8836 13 8 5.8534 -0.2343 1.0319 14 7 5.4397 -0.5966 3.1839 15 6 6.7435 -0.0520 3.5711 16 6 6.8906 -0.1140 5.0927 17 6 8.2520 0.4554 5.4971 18 7 8.3925 0.3966 6.9542 19 6 8.9578 -0.7287 7.7143 20 6 8.8648 -0.2646 9.1806 21 8 8.2626 1.0594 9.0941 22 6 8.0316 1.3612 7.8115 23 8 7.5369 2.4127 7.4565 24 6 4.0648 -2.4728 -0.5193 25 9 3.4731 -3.5888 0.0820 26 9 3.7812 -2.4760 -1.8892 27 9 5.4501 -2.5207 -0.3297 28 1 -0.4850 0.8400 0.0004 29 1 3.2792 -1.4726 2.2068 30 1 4.8297 -0.9237 3.8634 31 1 7.5352 -0.6389 3.1056 32 1 6.8171 0.9841 3.2405 33 1 6.0988 0.4728 5.5585 34 1 6.8171 -1.1501 5.4230 35 1 9.0439 -0.1310 5.0314 36 1 8.3250 1.4917 5.1670 37 1 8.3659 -1.6308 7.5599 38 1 9.9968 -0.8982 7.4315 39 1 8.2274 -0.9371 9.7546 40 1 9.8576 -0.2070 9.6270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932914767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:56 Heat of formation + Delta-G solvation = -256.387522 kcal Electronic energy + Delta-G solvation = -29856.780942 eV Core-core repulsion = 24871.063525 eV Total energy + Delta-G solvation = -4985.717418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.04642 -46.55328 -46.54289 -41.89757 -39.40215 -37.56490 -36.76802 -35.25062 -34.39874 -32.61124 -31.93397 -29.99535 -28.81362 -26.01147 -24.95551 -24.12212 -22.54798 -21.40693 -21.17509 -20.23569 -18.54048 -17.87209 -17.60567 -17.55108 -17.30098 -17.22065 -16.81793 -16.41375 -15.86173 -15.72271 -15.03821 -14.59908 -14.54934 -14.44369 -14.12902 -14.02250 -13.70912 -13.50676 -13.41486 -13.06013 -12.97470 -12.92528 -12.74431 -12.72304 -12.61395 -12.49854 -12.42892 -11.82643 -11.72636 -11.25318 -11.11680 -11.07683 -10.89001 -10.65018 -10.16206 -9.81071 -9.70347 -9.37967 -8.97034 -8.83665 -8.26677 -6.52682 -4.67861 2.00388 2.38847 3.00128 3.09536 3.22648 3.24848 3.35877 3.64997 3.66455 4.00855 4.13050 4.13589 4.18454 4.50382 4.65447 4.68979 4.77088 4.84792 4.94181 4.96413 4.98456 5.16298 5.19968 5.23703 5.42912 5.48361 5.54426 5.88345 5.90662 6.02410 6.32162 6.76698 6.89521 6.94572 7.21647 7.45794 7.67000 7.92191 8.53081 8.65394 9.03423 9.18840 10.55308 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002599 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.302373 B =10770.610977 C =11760.830383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.100 3.900 3 Si 0.871 3.129 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.223 3.777 10 H 0.087 0.913 11 N -0.729 5.729 12 C 0.694 3.306 13 O -0.593 6.593 14 N -0.754 5.754 15 C 0.144 3.856 16 C -0.151 4.151 17 C 0.150 3.850 18 N -0.631 5.631 19 C 0.064 3.936 20 C 0.041 3.959 21 O -0.330 6.330 22 C 0.641 3.359 23 O -0.517 6.517 24 C 0.440 3.560 25 F -0.191 7.191 26 F -0.185 7.185 27 F -0.194 7.194 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.394 0.606 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.916 -4.437 16.239 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.110 4.110 3 Si 0.696 3.304 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.119 3.881 10 H 0.105 0.895 11 N -0.384 5.384 12 C 0.394 3.606 13 O -0.472 6.472 14 N -0.411 5.411 15 C 0.019 3.981 16 C -0.190 4.190 17 C 0.029 3.971 18 N -0.379 5.379 19 C -0.060 4.060 20 C -0.034 4.034 21 O -0.240 6.240 22 C 0.395 3.605 23 O -0.401 6.401 24 C 0.384 3.616 25 F -0.173 7.173 26 F -0.167 7.167 27 F -0.176 7.176 28 H 0.085 0.915 29 H 0.231 0.769 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.152 -3.274 15.426 23.300 hybrid contribution -0.089 0.043 0.573 0.581 sum 17.063 -3.231 15.999 23.613 Atomic orbital electron populations 1.69865 1.06473 1.28429 1.44492 1.24979 0.94778 0.99387 0.91882 0.86895 0.80923 0.82530 0.80099 1.19232 1.20779 1.17525 1.20791 0.86459 0.96422 1.53847 0.88798 1.19862 0.97602 0.90214 0.80453 0.89533 1.46831 1.16088 1.65705 1.09804 1.16397 0.82877 0.78983 0.82337 1.90871 1.52496 1.54404 1.49417 1.45150 1.19688 1.69549 1.06762 1.20916 0.85257 0.99571 0.92401 1.22209 0.98340 1.02339 0.96118 1.21240 0.97304 1.03678 0.74861 1.48082 1.64756 1.17460 1.07563 1.22833 1.01298 0.91439 0.90403 1.24291 1.00700 0.81581 0.96861 1.87303 1.75950 1.35372 1.25365 1.18534 0.78045 0.84231 0.79734 1.91083 1.47259 1.24444 1.77313 1.21639 0.74879 0.88299 0.76818 1.93073 1.83990 1.56666 1.83537 1.93097 1.93433 1.96896 1.33270 1.93136 1.32496 1.96994 1.94973 0.91465 0.76887 0.77321 0.91618 0.91602 0.90534 0.90883 0.89115 0.88804 0.88829 0.88864 0.87551 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.67 13.96 55.43 0.77 -22.90 16 2 C 0.10 2.62 5.47 -17.82 -0.10 2.52 16 3 Si 0.87 20.47 26.92 -169.99 -4.58 15.90 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.25 -6.02 6.83 56.52 0.39 -5.63 16 7 C -0.54 -13.74 8.68 -34.44 -0.30 -14.04 16 8 H 0.09 2.59 7.69 -52.49 -0.40 2.19 16 9 C 0.22 5.16 1.45 -69.08 -0.10 5.06 16 10 H 0.09 2.15 5.33 -51.93 -0.28 1.88 16 11 N -0.73 -14.77 4.94 -59.81 -0.30 -15.06 16 12 C 0.69 13.70 7.86 -86.92 -0.68 13.02 16 13 O -0.59 -13.81 14.95 5.28 0.08 -13.73 16 14 N -0.75 -10.98 5.56 -65.23 -0.36 -11.35 16 15 C 0.14 1.72 5.67 -4.04 -0.02 1.69 16 16 C -0.15 -1.29 5.65 -26.73 -0.15 -1.44 16 17 C 0.15 1.13 6.02 -4.04 -0.02 1.10 16 18 N -0.63 -4.92 2.96 -178.85 -0.53 -5.45 16 19 C 0.06 0.22 7.70 -3.15 -0.02 0.19 16 20 C 0.04 0.14 8.23 37.73 0.31 0.45 16 21 O -0.33 -3.15 11.09 -37.83 -0.42 -3.57 16 22 C 0.64 7.40 8.85 53.71 0.48 7.88 16 23 O -0.52 -8.33 17.54 -19.12 -0.34 -8.67 16 24 C 0.44 9.83 2.83 37.16 0.11 9.94 16 25 F -0.19 -4.13 16.65 2.25 0.04 -4.09 16 26 F -0.19 -4.20 17.12 2.25 0.04 -4.16 16 27 F -0.19 -4.31 15.56 2.25 0.04 -4.27 16 28 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.40 7.15 8.61 -40.82 -0.35 6.80 16 30 H 0.39 4.64 8.49 -40.82 -0.35 4.30 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 37 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -35.27 356.29 -5.44 -40.71 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.74 Total: 4.90 kcal Atomic # 6 Polarization: 26.89 SS G_CDS: -0.51 Total: 26.38 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.41 Total: -54.75 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.68 Total: -25.97 kcal Atomic # 9 Polarization: -12.64 SS G_CDS: 0.11 Total: -12.53 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.58 Total: 15.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.27 -5.44 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.681 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds