Wall clock time and date at job start Tue Mar 31 2020 22:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48489 * 109.47526 * 264.65301 * 3 2 1 5 5 H 1.48501 * 109.47102 * 24.65759 * 3 2 1 6 6 H 1.48498 * 109.46774 * 144.65045 * 3 2 1 7 7 C 1.37875 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99736 * 5.03925 * 7 2 1 9 9 C 1.50704 * 119.99791 * 185.03494 * 7 2 1 10 10 H 1.08999 * 109.47149 * 325.30990 * 9 7 2 11 11 N 1.46500 * 109.47031 * 85.30868 * 9 7 2 12 12 C 1.34771 * 120.00117 * 204.99949 * 11 9 7 13 13 O 1.21592 * 119.99768 * 359.97438 * 12 11 9 14 14 N 1.34774 * 120.00066 * 179.97438 * 12 11 9 15 15 C 1.46501 * 119.99869 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47003 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47092 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.46886 * 179.97438 * 17 16 15 19 19 C 1.47094 * 125.55652 * 89.99903 * 18 17 16 20 20 C 1.54087 * 103.77487 * 179.97438 * 19 18 17 21 21 O 1.45710 * 104.01023 * 0.02562 * 20 19 18 22 22 C 1.33771 * 109.47222 * 359.75798 * 21 20 19 23 23 O 1.21511 * 123.07175 * 180.24791 * 22 21 20 24 24 C 1.52999 * 109.46989 * 205.30845 * 9 7 2 25 25 F 1.39905 * 109.47234 * 304.14191 * 24 9 7 26 26 F 1.39896 * 109.47154 * 64.14247 * 24 9 7 27 27 F 1.39897 * 109.47137 * 184.14453 * 24 9 7 28 28 H 0.96997 * 120.00165 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99933 * 24.99725 * 11 9 7 30 30 H 0.96997 * 120.00158 * 0.02562 * 14 12 11 31 31 H 1.08993 * 109.47479 * 300.00511 * 15 14 12 32 32 H 1.09000 * 109.46968 * 60.00561 * 15 14 12 33 33 H 1.09002 * 109.46963 * 300.00073 * 16 15 14 34 34 H 1.08995 * 109.47480 * 60.00087 * 16 15 14 35 35 H 1.08992 * 109.46895 * 299.99805 * 17 16 15 36 36 H 1.09000 * 109.47209 * 60.00287 * 17 16 15 37 37 H 1.08993 * 110.56546 * 298.54934 * 19 18 17 38 38 H 1.09000 * 110.56032 * 61.41002 * 19 18 17 39 39 H 1.08999 * 110.52440 * 118.63458 * 20 19 18 40 40 H 1.09000 * 110.52668 * 241.23544 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6096 1.9813 -1.3938 5 1 1.3946 2.6827 0.5841 6 1 3.4855 1.4755 0.8100 7 6 2.0046 -1.1940 -0.0005 8 1 1.4677 -2.1274 -0.0831 9 6 3.5072 -1.1965 0.1140 10 1 3.9125 -0.3270 -0.4035 11 7 3.8893 -1.1455 1.5274 12 6 5.0885 -0.6440 1.8836 13 8 5.8534 -0.2343 1.0319 14 7 5.4397 -0.5966 3.1839 15 6 6.7435 -0.0520 3.5711 16 6 6.8906 -0.1140 5.0927 17 6 8.2520 0.4554 5.4971 18 7 8.3925 0.3966 6.9542 19 6 8.9578 -0.7287 7.7143 20 6 8.8648 -0.2646 9.1806 21 8 8.2626 1.0594 9.0941 22 6 8.0316 1.3612 7.8115 23 8 7.5369 2.4127 7.4565 24 6 4.0648 -2.4728 -0.5193 25 9 3.4731 -3.5888 0.0820 26 9 3.7812 -2.4760 -1.8892 27 9 5.4501 -2.5207 -0.3297 28 1 -0.4850 0.8400 0.0004 29 1 3.2792 -1.4726 2.2068 30 1 4.8297 -0.9237 3.8634 31 1 7.5352 -0.6389 3.1056 32 1 6.8171 0.9841 3.2405 33 1 6.0988 0.4728 5.5585 34 1 6.8171 -1.1501 5.4230 35 1 9.0439 -0.1310 5.0314 36 1 8.3250 1.4917 5.1670 37 1 8.3659 -1.6308 7.5599 38 1 9.9968 -0.8982 7.4315 39 1 8.2274 -0.9371 9.7546 40 1 9.8576 -0.2070 9.6270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:55 Heat of formation + Delta-G solvation = -283.901266 kcal Electronic energy + Delta-G solvation = -29857.974028 eV Core-core repulsion = 24871.063525 eV Total energy + Delta-G solvation = -4986.910503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.85254 -48.36030 -48.33939 -42.52491 -40.94268 -38.39300 -37.65780 -36.66553 -35.77565 -34.48302 -32.93934 -30.90848 -30.08671 -26.97912 -26.83070 -24.51768 -23.63749 -22.91967 -22.07529 -21.64665 -20.29233 -19.36518 -19.01098 -18.65348 -18.40446 -18.33555 -18.12969 -17.82817 -17.22310 -16.78321 -16.23477 -15.97482 -15.55582 -15.33245 -15.28083 -15.17092 -15.05166 -14.90483 -14.79840 -14.76291 -14.58156 -14.54307 -14.47727 -14.37973 -13.74185 -13.45491 -13.21233 -13.06377 -12.99947 -12.65346 -12.53312 -12.03935 -12.02271 -11.83329 -11.73747 -11.62914 -11.37037 -10.98550 -10.33170 -9.97238 -9.78077 -8.55594 -6.73507 1.24596 1.33450 1.37812 1.44895 1.58625 1.74255 1.96536 2.17272 2.32399 2.61404 2.85596 3.17460 3.36911 3.38404 3.39650 3.66972 3.75472 3.91722 3.99599 4.10672 4.14961 4.43120 4.47718 4.53826 4.57725 4.71911 4.80299 4.81422 4.95105 5.08842 5.12567 5.38451 5.51354 5.56415 5.83709 6.14539 6.32136 6.44645 6.90133 7.00028 7.18376 7.64597 8.56403 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002599 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.302373 B =10770.610977 C =11760.830383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.231 3.769 10 H 0.073 0.927 11 N -0.727 5.727 12 C 0.691 3.309 13 O -0.629 6.629 14 N -0.737 5.737 15 C 0.143 3.857 16 C -0.134 4.134 17 C 0.149 3.851 18 N -0.623 5.623 19 C 0.061 3.939 20 C 0.033 3.967 21 O -0.353 6.353 22 C 0.634 3.366 23 O -0.581 6.581 24 C 0.443 3.557 25 F -0.186 7.186 26 F -0.188 7.188 27 F -0.190 7.190 28 H 0.280 0.720 29 H 0.408 0.592 30 H 0.409 0.591 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.922 -5.819 17.767 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.125 3.875 10 H 0.091 0.909 11 N -0.383 5.383 12 C 0.391 3.609 13 O -0.510 6.510 14 N -0.394 5.394 15 C 0.018 3.982 16 C -0.173 4.173 17 C 0.028 3.972 18 N -0.370 5.370 19 C -0.060 4.060 20 C -0.040 4.040 21 O -0.263 6.263 22 C 0.388 3.612 23 O -0.469 6.469 24 C 0.387 3.613 25 F -0.167 7.167 26 F -0.170 7.170 27 F -0.172 7.172 28 H 0.089 0.911 29 H 0.245 0.755 30 H 0.245 0.755 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.182 -4.719 17.031 26.082 hybrid contribution -0.613 0.336 0.181 0.722 sum 18.569 -4.382 17.212 25.695 Atomic orbital electron populations 1.69927 1.07604 1.29323 1.46348 1.25478 0.95169 1.01663 0.91743 0.86091 0.79537 0.79890 0.79792 1.19275 1.20082 1.18194 1.20720 0.87535 0.95359 1.53842 0.91362 1.19531 0.96040 0.90205 0.81752 0.90929 1.46290 1.16941 1.66219 1.08878 1.16460 0.82158 0.78650 0.83650 1.90850 1.53356 1.55844 1.50936 1.45026 1.20877 1.68308 1.05191 1.21072 0.83922 0.98493 0.94707 1.22045 0.98412 1.03545 0.93251 1.21276 0.97721 1.03164 0.75050 1.48150 1.63600 1.17842 1.07424 1.23225 1.03082 0.90354 0.89357 1.24800 1.02276 0.79241 0.97693 1.87254 1.76234 1.38460 1.24319 1.18792 0.77662 0.84132 0.80601 1.91017 1.50190 1.27166 1.78569 1.21474 0.75023 0.88176 0.76668 1.93082 1.83936 1.56291 1.83425 1.93092 1.93471 1.96908 1.33480 1.93143 1.32127 1.96974 1.94944 0.91055 0.75526 0.75473 0.90765 0.93352 0.92424 0.88372 0.85678 0.90874 0.86562 0.86123 0.85385 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.69 13.96 21.45 0.30 -49.39 16 2 C 0.07 3.46 5.47 84.65 0.46 3.93 16 3 Si 0.92 42.28 26.92 68.60 1.85 44.13 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.26 -12.00 6.83 99.48 0.68 -11.32 16 7 C -0.54 -27.49 8.68 25.60 0.22 -27.27 16 8 H 0.07 3.82 7.69 -2.91 -0.02 3.80 16 9 C 0.23 10.56 1.45 44.25 0.06 10.63 16 10 H 0.07 3.58 5.33 -2.39 -0.01 3.56 16 11 N -0.73 -28.61 4.94 -461.41 -2.28 -30.89 16 12 C 0.69 26.27 7.86 179.06 1.41 27.68 16 13 O -0.63 -28.58 14.95 -4.01 -0.06 -28.64 16 14 N -0.74 -19.95 5.56 -478.54 -2.66 -22.61 16 15 C 0.14 3.12 5.67 86.38 0.49 3.61 16 16 C -0.13 -1.97 5.65 30.60 0.17 -1.80 16 17 C 0.15 1.91 6.02 86.38 0.52 2.43 16 18 N -0.62 -8.33 2.96 -951.46 -2.82 -11.15 16 19 C 0.06 0.17 7.70 86.63 0.67 0.83 16 20 C 0.03 0.13 8.23 72.35 0.60 0.72 16 21 O -0.35 -6.39 11.09 -47.31 -0.52 -6.91 16 22 C 0.63 14.43 8.85 129.91 1.15 15.58 16 23 O -0.58 -19.55 17.54 19.65 0.34 -19.21 16 24 C 0.44 19.43 2.83 71.98 0.20 19.63 16 25 F -0.19 -7.85 16.65 44.97 0.75 -7.10 16 26 F -0.19 -8.40 17.12 44.97 0.77 -7.63 16 27 F -0.19 -8.18 15.56 44.97 0.70 -7.48 16 28 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.41 14.17 8.61 -92.71 -0.80 13.37 16 30 H 0.41 8.62 8.49 -92.71 -0.79 7.83 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 1.27 7.92 -2.39 -0.02 1.26 16 37 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: -1.00 -78.73 356.29 1.83 -76.90 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -0.49 Total: 14.01 kcal Atomic # 6 Polarization: 50.03 SS G_CDS: 5.95 Total: 55.98 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -7.46 Total: -114.04 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.24 Total: -54.77 kcal Atomic # 9 Polarization: -24.43 SS G_CDS: 2.22 Total: -22.21 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.85 Total: 44.13 kcal Total: -78.73 1.83 -76.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.999 kcal (2) G-P(sol) polarization free energy of solvation -78.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds