Wall clock time and date at job start Tue Mar 31 2020 22:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48500 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47548 * 299.99644 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99836 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 N 1.46492 * 109.47354 * 179.97438 * 9 7 2 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 9 7 13 13 O 1.21592 * 119.99963 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00068 * 179.97438 * 12 11 9 15 15 C 1.46498 * 119.99881 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47281 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47334 * 180.02562 * 17 16 15 19 19 C 1.47091 * 125.56125 * 89.99536 * 18 17 16 20 20 C 1.54086 * 103.77767 * 179.97438 * 19 18 17 21 21 O 1.45698 * 104.00726 * 0.02562 * 20 19 18 22 22 C 1.33764 * 109.47912 * 359.75812 * 21 20 19 23 23 O 1.21508 * 123.07403 * 180.24424 * 22 21 20 24 24 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 25 25 F 1.39895 * 109.46931 * 180.02562 * 24 9 7 26 26 F 1.39897 * 109.47129 * 300.00544 * 24 9 7 27 27 F 1.39900 * 109.46764 * 60.00523 * 24 9 7 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00153 * 334.99428 * 11 9 7 30 30 H 0.96998 * 119.99899 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.47643 * 300.01132 * 15 14 12 32 32 H 1.09008 * 109.46934 * 60.00410 * 15 14 12 33 33 H 1.08999 * 109.46963 * 300.00390 * 16 15 14 34 34 H 1.09008 * 109.47037 * 60.00193 * 16 15 14 35 35 H 1.08999 * 109.47245 * 299.99978 * 17 16 15 36 36 H 1.09004 * 109.46919 * 60.00476 * 17 16 15 37 37 H 1.08997 * 110.56737 * 298.55781 * 19 18 17 38 38 H 1.09004 * 110.56006 * 61.40994 * 19 18 17 39 39 H 1.08998 * 110.52301 * 118.63890 * 20 19 18 40 40 H 1.09000 * 110.52094 * 241.23505 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6126 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7168 -4.9703 0.9393 14 7 2.7128 -5.8368 0.4933 15 6 2.3150 -7.1406 1.0301 16 6 3.4850 -8.1193 0.9118 17 6 3.0694 -9.4811 1.4718 18 7 4.1900 -10.4181 1.3591 19 6 5.2283 -10.6364 2.3778 20 6 6.1388 -11.7092 1.7498 21 8 5.5249 -11.9796 0.4564 22 6 4.4334 -11.2197 0.3131 23 8 3.7288 -11.2511 -0.6763 24 6 0.3719 -2.5805 -1.2490 25 9 -0.3280 -3.7918 -1.2486 26 9 -0.5372 -1.5172 -1.2495 27 9 1.1765 -2.5066 -2.3910 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4865 -0.3546 30 1 3.6066 -5.7106 0.1383 31 1 2.0366 -7.0325 2.0783 32 1 1.4638 -7.5215 0.4656 33 1 3.7637 -8.2275 -0.1364 34 1 4.3360 -7.7382 1.4765 35 1 2.7905 -9.3733 2.5199 36 1 2.2187 -9.8620 0.9067 37 1 5.7867 -9.7180 2.5583 38 1 4.7852 -11.0044 3.3033 39 1 7.1499 -11.3235 1.6194 40 1 6.1505 -12.6086 2.3655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932914768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:58 Heat of formation + Delta-G solvation = -232.739357 kcal Electronic energy + Delta-G solvation = -29786.866099 eV Core-core repulsion = 24802.174142 eV Total energy + Delta-G solvation = -4984.691956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.29260 -45.94520 -45.56409 -41.89653 -39.36895 -37.56178 -36.75124 -35.15951 -34.34229 -32.65203 -31.86277 -29.91642 -28.26550 -25.97745 -24.52806 -24.11728 -22.56608 -21.49207 -21.18002 -20.14759 -18.33324 -17.83650 -17.55007 -17.22379 -16.83556 -16.76249 -16.56641 -16.04880 -15.87072 -15.15026 -15.06055 -14.77578 -14.54927 -14.43973 -14.13802 -13.94796 -13.64512 -13.27581 -12.91793 -12.85703 -12.60050 -12.49401 -12.36788 -12.33485 -12.24341 -11.94315 -11.81032 -11.76771 -11.25879 -11.15622 -11.09580 -10.89038 -10.85877 -10.75539 -10.39418 -9.64731 -9.59302 -9.35814 -8.82007 -8.71116 -8.15303 -6.22987 -4.46654 2.00797 2.39066 3.01832 3.17308 3.19481 3.25992 3.29997 3.65227 3.79076 4.13249 4.18851 4.19446 4.58643 4.65670 4.68094 4.69682 4.78115 4.93261 4.94526 4.95562 5.00500 5.17246 5.43641 5.54449 5.85109 5.90619 5.91587 5.93107 6.03054 6.25825 6.76375 6.85546 6.94863 7.21886 7.37837 7.63073 7.67239 7.69141 8.50343 8.66271 9.15365 9.26053 10.68719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.002179 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.467382 B =12847.344478 C =13382.239812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.584 6.584 14 N -0.754 5.754 15 C 0.145 3.855 16 C -0.151 4.151 17 C 0.150 3.850 18 N -0.630 5.630 19 C 0.064 3.936 20 C 0.041 3.959 21 O -0.330 6.330 22 C 0.641 3.359 23 O -0.517 6.517 24 C 0.415 3.585 25 F -0.216 7.216 26 F -0.138 7.138 27 F -0.210 7.210 28 H 0.267 0.733 29 H 0.394 0.606 30 H 0.393 0.607 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.975 -17.897 7.339 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.379 5.379 12 C 0.398 3.602 13 O -0.461 6.461 14 N -0.411 5.411 15 C 0.019 3.981 16 C -0.190 4.190 17 C 0.029 3.971 18 N -0.378 5.378 19 C -0.060 4.060 20 C -0.034 4.034 21 O -0.240 6.240 22 C 0.394 3.606 23 O -0.401 6.401 24 C 0.359 3.641 25 F -0.198 7.198 26 F -0.119 7.119 27 F -0.192 7.192 28 H 0.078 0.922 29 H 0.227 0.773 30 H 0.226 0.774 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.410 -18.090 7.062 22.524 hybrid contribution 1.208 1.033 -0.465 1.656 sum 12.618 -17.058 6.597 22.219 Atomic orbital electron populations 1.70420 1.05837 1.27231 1.43750 1.25089 0.95160 1.00104 0.94121 0.86155 0.79749 0.82004 0.77869 1.19456 1.20579 1.20585 1.20913 0.93788 0.88104 1.56014 0.90479 1.19601 0.88257 0.84959 0.91588 0.89728 1.45264 1.17384 1.09743 1.65528 1.16061 0.84345 0.80510 0.79275 1.90920 1.19591 1.82927 1.52653 1.45032 1.16302 1.10700 1.69089 1.20918 0.96216 0.81452 0.99472 1.22204 0.99114 0.94630 1.03019 1.21244 0.86486 0.86669 1.02706 1.48083 1.29372 1.42273 1.18114 1.22832 0.89870 1.00127 0.93143 1.24287 0.97784 0.99628 0.81732 1.87298 1.39161 1.60058 1.37498 1.18536 0.80378 0.77934 0.83710 1.91082 1.48497 1.69781 1.30724 1.23175 0.80921 0.72809 0.87197 1.93073 1.81427 1.48364 1.96963 1.93398 1.68430 1.53851 1.96208 1.92983 1.74423 1.96193 1.55630 0.92178 0.77265 0.77438 0.91569 0.91430 0.90564 0.90917 0.89088 0.88741 0.88840 0.88853 0.87575 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.05 9.50 55.43 0.53 -22.52 16 2 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -14.01 8.46 -34.44 -0.29 -14.30 16 8 H 0.08 1.85 7.74 -52.48 -0.41 1.44 16 9 C 0.26 6.56 2.21 -69.08 -0.15 6.40 16 10 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 11 N -0.73 -14.87 4.99 -59.81 -0.30 -15.17 16 12 C 0.70 13.87 8.10 -86.92 -0.70 13.16 16 13 O -0.58 -14.01 14.92 5.29 0.08 -13.93 16 14 N -0.75 -10.64 5.56 -65.22 -0.36 -11.00 16 15 C 0.14 1.68 5.67 -4.05 -0.02 1.66 16 16 C -0.15 -1.23 5.65 -26.73 -0.15 -1.38 16 17 C 0.15 1.09 6.02 -4.04 -0.02 1.06 16 18 N -0.63 -4.74 2.96 -178.85 -0.53 -5.27 16 19 C 0.06 0.20 7.69 -3.15 -0.02 0.18 16 20 C 0.04 0.13 8.23 37.72 0.31 0.44 16 21 O -0.33 -3.07 11.09 -37.81 -0.42 -3.49 16 22 C 0.64 7.22 8.85 53.71 0.48 7.69 16 23 O -0.52 -8.17 17.54 -19.11 -0.34 -8.51 16 24 C 0.42 10.84 2.81 37.16 0.10 10.95 16 25 F -0.22 -5.67 15.68 2.25 0.04 -5.63 16 26 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 27 F -0.21 -5.28 16.94 2.25 0.04 -5.25 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 6.87 8.55 -40.82 -0.35 6.53 16 30 H 0.39 4.38 8.49 -40.82 -0.35 4.04 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.82 7.92 -51.93 -0.41 0.40 16 37 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -36.21 353.71 -6.35 -42.55 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.85 Total: 4.30 kcal Atomic # 6 Polarization: 28.01 SS G_CDS: -0.57 Total: 27.43 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.66 Total: -53.96 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.68 Total: -25.92 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.71 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.21 -6.35 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.186 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds