Wall clock time and date at job start Tue Mar 31 2020 22:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48500 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47548 * 299.99644 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99836 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 N 1.46492 * 109.47354 * 179.97438 * 9 7 2 12 12 C 1.34779 * 120.00234 * 154.99895 * 11 9 7 13 13 O 1.21592 * 119.99963 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00068 * 179.97438 * 12 11 9 15 15 C 1.46498 * 119.99881 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47281 * 180.02562 * 16 15 14 18 18 N 1.46503 * 109.47334 * 180.02562 * 17 16 15 19 19 C 1.47091 * 125.56125 * 89.99536 * 18 17 16 20 20 C 1.54086 * 103.77767 * 179.97438 * 19 18 17 21 21 O 1.45698 * 104.00726 * 0.02562 * 20 19 18 22 22 C 1.33764 * 109.47912 * 359.75812 * 21 20 19 23 23 O 1.21508 * 123.07403 * 180.24424 * 22 21 20 24 24 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 25 25 F 1.39895 * 109.46931 * 180.02562 * 24 9 7 26 26 F 1.39897 * 109.47129 * 300.00544 * 24 9 7 27 27 F 1.39900 * 109.46764 * 60.00523 * 24 9 7 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00153 * 334.99428 * 11 9 7 30 30 H 0.96998 * 119.99899 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.47643 * 300.01132 * 15 14 12 32 32 H 1.09008 * 109.46934 * 60.00410 * 15 14 12 33 33 H 1.08999 * 109.46963 * 300.00390 * 16 15 14 34 34 H 1.09008 * 109.47037 * 60.00193 * 16 15 14 35 35 H 1.08999 * 109.47245 * 299.99978 * 17 16 15 36 36 H 1.09004 * 109.46919 * 60.00476 * 17 16 15 37 37 H 1.08997 * 110.56737 * 298.55781 * 19 18 17 38 38 H 1.09004 * 110.56006 * 61.40994 * 19 18 17 39 39 H 1.08998 * 110.52301 * 118.63890 * 20 19 18 40 40 H 1.09000 * 110.52094 * 241.23505 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2031 -3.6126 0.0005 12 6 1.8371 -4.8123 0.4938 13 8 0.7168 -4.9703 0.9393 14 7 2.7128 -5.8368 0.4933 15 6 2.3150 -7.1406 1.0301 16 6 3.4850 -8.1193 0.9118 17 6 3.0694 -9.4811 1.4718 18 7 4.1900 -10.4181 1.3591 19 6 5.2283 -10.6364 2.3778 20 6 6.1388 -11.7092 1.7498 21 8 5.5249 -11.9796 0.4564 22 6 4.4334 -11.2197 0.3131 23 8 3.7288 -11.2511 -0.6763 24 6 0.3719 -2.5805 -1.2490 25 9 -0.3280 -3.7918 -1.2486 26 9 -0.5372 -1.5172 -1.2495 27 9 1.1765 -2.5066 -2.3910 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4865 -0.3546 30 1 3.6066 -5.7106 0.1383 31 1 2.0366 -7.0325 2.0783 32 1 1.4638 -7.5215 0.4656 33 1 3.7637 -8.2275 -0.1364 34 1 4.3360 -7.7382 1.4765 35 1 2.7905 -9.3733 2.5199 36 1 2.2187 -9.8620 0.9067 37 1 5.7867 -9.7180 2.5583 38 1 4.7852 -11.0044 3.3033 39 1 7.1499 -11.3235 1.6194 40 1 6.1505 -12.6086 2.3655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:58 Heat of formation + Delta-G solvation = -260.631680 kcal Electronic energy + Delta-G solvation = -29788.075600 eV Core-core repulsion = 24802.174142 eV Total energy + Delta-G solvation = -4985.901458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39499 -48.03232 -47.70720 -42.50894 -40.91925 -38.37473 -37.61581 -36.56575 -35.77412 -34.46524 -32.83306 -30.61145 -29.83854 -26.94739 -26.51436 -24.50393 -23.78394 -22.97543 -22.05555 -21.63235 -19.95496 -18.87303 -18.76489 -18.55008 -18.44691 -18.12453 -17.85893 -17.70024 -17.00257 -16.68229 -16.38447 -16.01887 -15.40775 -15.28807 -15.08347 -15.02929 -14.93327 -14.76326 -14.60184 -14.45518 -14.39039 -14.27557 -14.01010 -13.86448 -13.51640 -13.22212 -13.04707 -12.99754 -12.72093 -12.64532 -12.61680 -12.19036 -12.00538 -11.72117 -11.61077 -11.53246 -11.28450 -10.68503 -10.29995 -9.95270 -9.75652 -8.19754 -6.50402 1.38668 1.47402 1.48795 1.60135 1.61574 1.80877 2.16276 2.38429 2.58403 2.63591 2.96152 3.33297 3.40407 3.68861 3.80990 3.89982 3.93604 4.00533 4.12443 4.16077 4.22357 4.49613 4.55312 4.59587 4.72701 4.81755 4.82532 4.90293 5.11391 5.14431 5.40176 5.45363 5.52574 5.57057 5.67305 6.14824 6.33962 6.55297 6.91959 7.17538 7.22505 7.67192 8.73382 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.002179 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.467382 B =12847.344478 C =13382.239812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.013 3.987 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.559 4.559 8 H 0.093 0.907 9 C 0.271 3.729 10 H 0.047 0.953 11 N -0.721 5.721 12 C 0.694 3.306 13 O -0.629 6.629 14 N -0.732 5.732 15 C 0.143 3.857 16 C -0.132 4.132 17 C 0.148 3.852 18 N -0.623 5.623 19 C 0.061 3.939 20 C 0.033 3.967 21 O -0.353 6.353 22 C 0.634 3.366 23 O -0.580 6.580 24 C 0.411 3.589 25 F -0.220 7.220 26 F -0.151 7.151 27 F -0.204 7.204 28 H 0.268 0.732 29 H 0.410 0.590 30 H 0.410 0.590 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.980 -17.940 8.968 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.111 0.889 9 C 0.163 3.837 10 H 0.065 0.935 11 N -0.375 5.375 12 C 0.393 3.607 13 O -0.510 6.510 14 N -0.389 5.389 15 C 0.018 3.982 16 C -0.171 4.171 17 C 0.027 3.973 18 N -0.370 5.370 19 C -0.060 4.060 20 C -0.040 4.040 21 O -0.263 6.263 22 C 0.388 3.612 23 O -0.469 6.469 24 C 0.354 3.646 25 F -0.202 7.202 26 F -0.132 7.132 27 F -0.186 7.186 28 H 0.078 0.922 29 H 0.246 0.754 30 H 0.247 0.753 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.525 -18.182 8.730 24.856 hybrid contribution 0.318 0.945 -0.910 1.350 sum 14.843 -17.237 7.821 24.054 Atomic orbital electron populations 1.70549 1.07533 1.28080 1.44794 1.26026 0.95907 1.03753 0.93535 0.85088 0.79158 0.77360 0.77548 1.17740 1.20889 1.20286 1.21254 0.94568 0.88191 1.55531 0.88859 1.19179 0.88414 0.86648 0.89478 0.93487 1.44995 1.17390 1.09195 1.65924 1.16272 0.84423 0.81098 0.78875 1.90890 1.21846 1.83684 1.54530 1.44882 1.16159 1.10058 1.67825 1.21074 0.97204 0.80640 0.99271 1.22032 0.98310 0.94199 1.02547 1.21274 0.85937 0.85827 1.04226 1.48144 1.29904 1.40880 1.18047 1.23224 0.88852 1.01301 0.92638 1.24794 0.98451 1.01175 0.79575 1.87250 1.38592 1.59817 1.40608 1.18790 0.80371 0.78318 0.83711 1.91018 1.50755 1.71819 1.33321 1.23431 0.80918 0.72312 0.87910 1.93061 1.81608 1.48511 1.97017 1.93371 1.69016 1.54534 1.96323 1.92980 1.74133 1.96153 1.55352 0.92194 0.75369 0.75333 0.90864 0.93445 0.92277 0.88245 0.85745 0.90907 0.86499 0.86206 0.85342 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.66 9.50 21.45 0.20 -48.46 16 2 C 0.01 0.66 5.20 84.65 0.44 1.10 16 3 Si 0.98 40.20 29.54 68.60 2.03 42.23 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.56 -28.01 8.46 25.60 0.22 -27.79 16 8 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 9 C 0.27 13.67 2.21 44.25 0.10 13.77 16 10 H 0.05 2.74 7.58 -2.39 -0.02 2.72 16 11 N -0.72 -29.11 4.99 -461.41 -2.30 -31.41 16 12 C 0.69 27.34 8.10 179.05 1.45 28.79 16 13 O -0.63 -30.72 14.92 -4.00 -0.06 -30.78 16 14 N -0.73 -19.65 5.56 -478.53 -2.66 -22.31 16 15 C 0.14 3.15 5.67 86.38 0.49 3.64 16 16 C -0.13 -1.89 5.65 30.59 0.17 -1.72 16 17 C 0.15 1.89 6.02 86.38 0.52 2.41 16 18 N -0.62 -8.14 2.96 -951.46 -2.82 -10.95 16 19 C 0.06 0.15 7.69 86.63 0.67 0.82 16 20 C 0.03 0.11 8.23 72.35 0.60 0.71 16 21 O -0.35 -6.25 11.09 -47.25 -0.52 -6.78 16 22 C 0.63 14.20 8.85 129.91 1.15 15.35 16 23 O -0.58 -19.33 17.54 19.66 0.34 -18.98 16 24 C 0.41 21.73 2.81 71.98 0.20 21.93 16 25 F -0.22 -11.77 15.68 44.97 0.70 -11.06 16 26 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 27 F -0.20 -10.21 16.94 44.97 0.76 -9.45 16 28 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.41 13.64 8.55 -92.70 -0.79 12.85 16 30 H 0.41 8.19 8.49 -92.71 -0.79 7.40 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 1.27 7.92 -2.38 -0.02 1.25 16 37 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -82.58 353.71 1.79 -80.79 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.46 Total: 16.24 kcal Atomic # 6 Polarization: 53.01 SS G_CDS: 6.00 Total: 59.01 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -7.58 Total: -113.13 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.24 Total: -56.54 kcal Atomic # 9 Polarization: -30.65 SS G_CDS: 2.05 Total: -28.60 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -82.58 1.79 -80.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.843 kcal (2) G-P(sol) polarization free energy of solvation -82.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds