Wall clock time and date at job start Tue Mar 31 2020 22:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00129 * 2 1 4 4 O 1.20826 * 120.00224 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99588 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46686 * 179.97438 * 5 3 2 7 7 C 1.37098 * 119.99905 * 96.67833 * 6 5 3 8 8 H 1.08004 * 119.99590 * 218.30115 * 7 6 5 9 9 C 1.38949 * 120.00394 * 38.57204 * 7 6 5 10 10 N 1.31408 * 120.00393 * 213.32413 * 9 7 6 11 11 Si 1.86801 * 119.99545 * 33.31802 * 9 7 6 12 12 H 1.48502 * 109.46969 * 87.02383 * 11 9 7 13 13 H 1.48504 * 109.47099 * 207.02003 * 11 9 7 14 14 H 1.48497 * 109.47344 * 327.02107 * 11 9 7 15 15 C 1.34776 * 119.99789 * 276.67296 * 6 5 3 16 16 O 1.21283 * 120.00158 * 354.65019 * 15 6 5 17 17 C 1.50705 * 119.99468 * 174.64563 * 15 6 5 18 18 C 1.52999 * 109.46622 * 183.55799 * 17 15 6 19 19 H 1.09001 * 110.33015 * 58.90300 * 18 17 15 20 20 C 1.54480 * 110.36926 * 181.14246 * 18 17 15 21 21 C 1.54693 * 103.97571 * 142.74091 * 20 18 17 22 22 C 1.54477 * 104.07917 * 0.13841 * 21 20 18 23 23 H 1.08999 * 110.37260 * 94.76100 * 22 21 20 24 24 C 1.53000 * 110.46299 * 217.04940 * 22 21 20 25 25 F 1.39901 * 109.46888 * 176.89220 * 24 22 21 26 26 F 1.39898 * 109.47443 * 296.88689 * 24 22 21 27 27 F 1.39890 * 109.47323 * 56.89148 * 24 22 21 28 28 O 1.44423 * 110.37644 * 296.64656 * 18 17 15 29 29 H 1.08999 * 109.46930 * 60.00014 * 1 2 3 30 30 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47226 * 300.00702 * 1 2 3 32 32 H 1.08995 * 109.47524 * 59.99863 * 5 3 2 33 33 H 1.08997 * 109.47374 * 299.99422 * 5 3 2 34 34 H 0.96995 * 120.00376 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47614 * 303.56090 * 17 15 6 36 36 H 1.09001 * 109.47217 * 63.56657 * 17 15 6 37 37 H 1.08995 * 110.51665 * 261.45654 * 20 18 17 38 38 H 1.08996 * 110.51436 * 24.17444 * 20 18 17 39 39 H 1.09000 * 110.58110 * 241.44919 * 21 20 18 40 40 H 1.09005 * 110.54146 * 118.80753 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.3081 3.2986 1.1788 8 1 4.0239 4.3271 1.3454 9 6 5.0093 2.6044 2.1572 10 7 4.7855 2.8538 3.4278 11 14 6.2701 1.3165 1.6661 12 1 7.5859 1.9696 1.4484 13 1 6.3920 0.3057 2.7471 14 1 5.8347 0.6503 0.4124 15 6 4.0433 3.3635 -1.1599 16 8 3.8494 2.7920 -2.2119 17 6 4.3529 4.8384 -1.1493 18 6 4.2754 5.3859 -2.5759 19 1 3.2823 5.2177 -2.9926 20 6 4.6176 6.8922 -2.5930 21 6 5.4150 7.0792 -3.9053 22 6 5.4558 5.6648 -4.5251 23 1 4.6440 5.5410 -5.2418 24 6 6.8052 5.4162 -5.2020 25 9 6.8461 4.1070 -5.6936 26 9 6.9692 6.3167 -6.2600 27 9 7.8341 5.5973 -4.2717 28 8 5.2810 4.7670 -3.4074 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9565 0.7804 -0.8891 33 1 3.9558 0.7808 0.8908 34 1 5.2753 2.3695 4.1107 35 1 3.6289 5.3572 -0.5211 36 1 5.3563 4.9962 -0.7537 37 1 3.7068 7.4907 -2.6089 38 1 5.2328 7.1540 -1.7322 39 1 6.4241 7.4327 -3.6934 40 1 4.9002 7.7728 -4.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933219503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:36 Heat of formation + Delta-G solvation = -302.264003 kcal Electronic energy + Delta-G solvation = -31043.718715 eV Core-core repulsion = 26023.719193 eV Total energy + Delta-G solvation = -5019.999522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.08794 -47.63918 -47.52419 -40.05022 -39.61737 -38.34332 -35.87767 -34.81560 -32.37847 -32.12986 -32.00867 -29.28359 -27.92216 -26.42500 -25.01128 -23.98681 -22.00790 -21.26311 -20.65424 -19.13539 -18.59086 -18.35081 -17.81550 -17.35628 -17.10236 -16.61368 -16.18466 -15.83249 -15.59442 -15.33285 -15.10546 -14.50259 -14.34761 -14.24677 -14.01786 -13.94324 -13.86009 -13.70144 -13.63476 -13.54260 -13.08963 -12.97186 -12.66966 -12.43658 -11.97485 -11.83888 -11.75459 -11.58593 -11.37159 -11.16765 -11.05394 -10.95326 -10.83438 -10.70897 -10.33691 -10.14627 -9.81481 -9.76078 -9.26607 -8.66747 -7.93350 -6.66400 -4.15161 2.54999 2.89123 3.03854 3.07513 3.18846 3.27849 3.43971 3.73819 3.77879 3.96173 4.04053 4.23775 4.48085 4.51190 4.71676 4.79669 4.86214 5.13223 5.16285 5.37884 5.43377 5.45363 5.48096 5.57743 5.63537 5.75728 5.79159 5.81786 5.96264 6.01058 6.13012 6.24147 6.43492 6.80961 6.87486 7.15558 7.92946 8.13689 8.41670 8.85106 9.22259 9.56909 10.44062 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.003740 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.745643 B = 7484.337614 C = 8268.356025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.495 6.495 5 C 0.123 3.877 6 N -0.451 5.451 7 C -0.359 4.359 8 H 0.104 0.896 9 C 0.076 3.924 10 N -0.833 5.833 11 Si 0.847 3.153 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.496 3.504 16 O -0.578 6.578 17 C -0.114 4.114 18 C 0.094 3.906 19 H 0.079 0.921 20 C -0.148 4.148 21 C -0.149 4.149 22 C 0.027 3.973 23 H 0.109 0.891 24 C 0.462 3.538 25 F -0.175 7.175 26 F -0.182 7.182 27 F -0.175 7.175 28 O -0.326 6.326 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.277 0.723 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 4.863 -10.857 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.380 6.380 5 C -0.002 4.002 6 N -0.172 5.172 7 C -0.485 4.485 8 H 0.121 0.879 9 C -0.134 4.134 10 N -0.465 5.465 11 Si 0.671 3.329 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.179 1.179 15 C 0.287 3.713 16 O -0.461 6.461 17 C -0.153 4.153 18 C 0.037 3.963 19 H 0.096 0.904 20 C -0.186 4.186 21 C -0.187 4.187 22 C -0.034 4.034 23 H 0.127 0.873 24 C 0.408 3.592 25 F -0.156 7.156 26 F -0.163 7.163 27 F -0.156 7.156 28 O -0.244 6.244 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.849 4.643 -11.107 12.069 hybrid contribution 0.582 -0.494 0.025 0.764 sum -0.267 4.150 -11.082 11.836 Atomic orbital electron populations 1.23120 0.77713 1.02770 1.02153 1.86531 1.22556 1.34651 1.84905 1.24993 0.93107 0.81092 0.71897 1.90586 1.66750 1.36339 1.44341 1.21367 0.85906 0.88216 1.04749 1.43285 1.58411 1.08431 1.07102 1.18901 1.37716 1.00307 0.91602 0.87891 1.25327 0.96592 0.97105 0.94351 1.69969 1.35973 1.40541 1.00060 0.87417 0.83995 0.81801 0.79679 1.19547 1.20571 1.17912 1.20287 0.78748 0.89355 0.82956 1.90588 1.53779 1.70735 1.31024 1.21511 1.05299 0.94451 0.94051 1.22922 0.92063 0.89848 0.91504 0.90353 1.23066 1.01021 0.96849 0.97685 1.23009 1.03044 0.94792 0.97806 1.24062 0.92733 0.92869 0.93703 0.87338 1.20277 0.87829 0.74194 0.76930 1.93219 1.96884 1.37231 1.88292 1.93172 1.96246 1.68147 1.58749 1.93192 1.62080 1.94882 1.65456 1.89411 1.59921 1.42224 1.32867 0.92440 0.88793 0.92244 0.87518 0.87378 0.91279 0.87661 0.87957 0.89683 0.89414 0.89550 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.89 10.57 -39.25 -0.41 -7.31 16 3 C 0.45 9.84 7.98 36.01 0.29 10.13 16 4 O -0.49 -12.01 16.01 -18.75 -0.30 -12.31 16 5 C 0.12 2.75 4.14 -5.19 -0.02 2.73 16 6 N -0.45 -10.73 1.69 -116.09 -0.20 -10.92 16 7 C -0.36 -9.00 8.97 -14.93 -0.13 -9.13 16 8 H 0.10 2.67 7.16 -52.48 -0.38 2.29 16 9 C 0.08 1.92 4.98 -17.47 -0.09 1.84 16 10 N -0.83 -21.92 13.96 55.50 0.77 -21.14 16 11 Si 0.85 18.90 26.54 -169.99 -4.51 14.38 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.25 -5.52 5.72 56.52 0.32 -5.19 16 15 C 0.50 11.35 7.28 -10.98 -0.08 11.27 16 16 O -0.58 -14.29 15.06 -10.81 -0.16 -14.45 16 17 C -0.11 -2.08 4.04 -27.88 -0.11 -2.20 16 18 C 0.09 1.47 2.80 -25.96 -0.07 1.40 16 19 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 20 C -0.15 -1.65 6.65 -25.06 -0.17 -1.82 16 21 C -0.15 -1.51 6.41 -25.07 -0.16 -1.67 16 22 C 0.03 0.34 3.25 -25.96 -0.08 0.26 16 23 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 24 C 0.46 6.23 2.86 37.16 0.11 6.34 16 25 F -0.17 -2.69 17.30 2.25 0.04 -2.65 16 26 F -0.18 -2.15 17.15 2.25 0.04 -2.11 16 27 F -0.17 -2.56 16.46 2.25 0.04 -2.52 16 28 O -0.33 -5.68 10.06 -51.59 -0.52 -6.20 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.11 2.28 7.54 -51.93 -0.39 1.89 16 33 H 0.11 2.35 4.79 -51.93 -0.25 2.10 16 34 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.11 1.81 7.65 -51.93 -0.40 1.41 16 36 H 0.10 1.85 8.12 -51.93 -0.42 1.43 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 39 H 0.09 0.86 7.28 -51.93 -0.38 0.48 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -31.49 350.30 -4.19 -35.68 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.79 Total: 3.54 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 0.54 Total: 20.74 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.58 Total: -32.07 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.40 Total: -40.27 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.11 Total: -7.29 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.51 Total: 14.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.49 -4.19 -35.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.583 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -302.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds