Wall clock time and date at job start Tue Mar 31 2020 22:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00129 * 2 1 4 4 O 1.20826 * 120.00224 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99588 * 179.97438 * 3 2 1 6 6 N 1.46506 * 109.46686 * 179.97438 * 5 3 2 7 7 C 1.37098 * 119.99905 * 96.67833 * 6 5 3 8 8 H 1.08004 * 119.99590 * 218.30115 * 7 6 5 9 9 C 1.38949 * 120.00394 * 38.57204 * 7 6 5 10 10 N 1.31408 * 120.00393 * 213.32413 * 9 7 6 11 11 Si 1.86801 * 119.99545 * 33.31802 * 9 7 6 12 12 H 1.48502 * 109.46969 * 87.02383 * 11 9 7 13 13 H 1.48504 * 109.47099 * 207.02003 * 11 9 7 14 14 H 1.48497 * 109.47344 * 327.02107 * 11 9 7 15 15 C 1.34776 * 119.99789 * 276.67296 * 6 5 3 16 16 O 1.21283 * 120.00158 * 354.65019 * 15 6 5 17 17 C 1.50705 * 119.99468 * 174.64563 * 15 6 5 18 18 C 1.52999 * 109.46622 * 183.55799 * 17 15 6 19 19 H 1.09001 * 110.33015 * 58.90300 * 18 17 15 20 20 C 1.54480 * 110.36926 * 181.14246 * 18 17 15 21 21 C 1.54693 * 103.97571 * 142.74091 * 20 18 17 22 22 C 1.54477 * 104.07917 * 0.13841 * 21 20 18 23 23 H 1.08999 * 110.37260 * 94.76100 * 22 21 20 24 24 C 1.53000 * 110.46299 * 217.04940 * 22 21 20 25 25 F 1.39901 * 109.46888 * 176.89220 * 24 22 21 26 26 F 1.39898 * 109.47443 * 296.88689 * 24 22 21 27 27 F 1.39890 * 109.47323 * 56.89148 * 24 22 21 28 28 O 1.44423 * 110.37644 * 296.64656 * 18 17 15 29 29 H 1.08999 * 109.46930 * 60.00014 * 1 2 3 30 30 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47226 * 300.00702 * 1 2 3 32 32 H 1.08995 * 109.47524 * 59.99863 * 5 3 2 33 33 H 1.08997 * 109.47374 * 299.99422 * 5 3 2 34 34 H 0.96995 * 120.00376 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47614 * 303.56090 * 17 15 6 36 36 H 1.09001 * 109.47217 * 63.56657 * 17 15 6 37 37 H 1.08995 * 110.51665 * 261.45654 * 20 18 17 38 38 H 1.08996 * 110.51436 * 24.17444 * 20 18 17 39 39 H 1.09000 * 110.58110 * 241.44919 * 21 20 18 40 40 H 1.09005 * 110.54146 * 118.80753 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.3081 3.2986 1.1788 8 1 4.0239 4.3271 1.3454 9 6 5.0093 2.6044 2.1572 10 7 4.7855 2.8538 3.4278 11 14 6.2701 1.3165 1.6661 12 1 7.5859 1.9696 1.4484 13 1 6.3920 0.3057 2.7471 14 1 5.8347 0.6503 0.4124 15 6 4.0433 3.3635 -1.1599 16 8 3.8494 2.7920 -2.2119 17 6 4.3529 4.8384 -1.1493 18 6 4.2754 5.3859 -2.5759 19 1 3.2823 5.2177 -2.9926 20 6 4.6176 6.8922 -2.5930 21 6 5.4150 7.0792 -3.9053 22 6 5.4558 5.6648 -4.5251 23 1 4.6440 5.5410 -5.2418 24 6 6.8052 5.4162 -5.2020 25 9 6.8461 4.1070 -5.6936 26 9 6.9692 6.3167 -6.2600 27 9 7.8341 5.5973 -4.2717 28 8 5.2810 4.7670 -3.4074 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9565 0.7804 -0.8891 33 1 3.9558 0.7808 0.8908 34 1 5.2753 2.3695 4.1107 35 1 3.6289 5.3572 -0.5211 36 1 5.3563 4.9962 -0.7537 37 1 3.7068 7.4907 -2.6089 38 1 5.2328 7.1540 -1.7322 39 1 6.4241 7.4327 -3.6934 40 1 4.9002 7.7728 -4.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933219503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:35 Heat of formation + Delta-G solvation = -321.004666 kcal Electronic energy + Delta-G solvation = -31044.531371 eV Core-core repulsion = 26023.719193 eV Total energy + Delta-G solvation = -5020.812178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.15702 -48.67510 -48.65265 -41.70280 -40.90890 -39.92457 -37.53085 -36.66060 -34.02900 -33.60224 -33.11548 -30.79995 -29.18680 -27.83147 -26.78160 -25.19299 -23.15181 -22.50877 -22.01753 -20.94125 -19.69163 -19.44294 -19.20718 -18.87990 -18.64503 -18.18259 -17.46888 -17.41670 -17.00698 -16.88038 -16.67540 -15.85773 -15.62790 -15.49170 -15.36870 -15.09366 -15.01315 -14.86671 -14.79347 -14.68400 -14.58832 -14.51455 -14.42397 -13.99257 -13.28864 -13.17526 -13.01209 -12.93516 -12.78543 -12.65771 -12.64380 -12.26242 -12.22071 -11.94890 -11.80853 -11.65622 -11.59480 -11.11012 -10.93439 -10.50131 -9.82486 -8.60459 -6.11474 1.15304 1.27474 1.37120 1.43911 1.51568 1.52771 2.00999 2.19012 2.38292 2.57824 2.73243 2.93951 2.95726 3.46079 3.50697 3.77908 3.86426 3.93918 4.02762 4.09272 4.18679 4.20275 4.28490 4.31101 4.31352 4.48327 4.60383 4.64423 4.81008 4.87027 4.95290 4.97622 5.19042 5.25707 5.33175 5.69129 6.05295 6.17360 6.73902 6.93264 7.34913 7.72712 8.53716 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.003740 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.745643 B = 7484.337614 C = 8268.356025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.451 3.549 4 O -0.525 6.525 5 C 0.115 3.885 6 N -0.461 5.461 7 C -0.360 4.360 8 H 0.086 0.914 9 C 0.046 3.954 10 N -0.869 5.869 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.270 1.270 14 H -0.248 1.248 15 C 0.486 3.514 16 O -0.600 6.600 17 C -0.110 4.110 18 C 0.093 3.907 19 H 0.072 0.928 20 C -0.139 4.139 21 C -0.140 4.140 22 C 0.021 3.979 23 H 0.127 0.873 24 C 0.462 3.538 25 F -0.190 7.190 26 F -0.170 7.170 27 F -0.184 7.184 28 O -0.366 6.366 29 H 0.058 0.942 30 H 0.139 0.861 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.283 0.717 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 5.170 -11.805 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.293 3.707 4 O -0.413 6.413 5 C -0.011 4.011 6 N -0.183 5.183 7 C -0.487 4.487 8 H 0.103 0.897 9 C -0.162 4.162 10 N -0.503 5.503 11 Si 0.718 3.282 12 H -0.200 1.200 13 H -0.195 1.195 14 H -0.171 1.171 15 C 0.278 3.722 16 O -0.485 6.485 17 C -0.150 4.150 18 C 0.035 3.965 19 H 0.090 0.910 20 C -0.176 4.176 21 C -0.177 4.177 22 C -0.039 4.039 23 H 0.145 0.855 24 C 0.407 3.593 25 F -0.172 7.172 26 F -0.151 7.151 27 F -0.165 7.165 28 O -0.285 6.285 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.091 4.931 -12.060 13.075 hybrid contribution 0.569 -0.642 0.277 0.902 sum -0.522 4.289 -11.783 12.550 Atomic orbital electron populations 1.23543 0.74952 1.05801 1.02176 1.86496 1.25127 1.32578 1.84094 1.24814 0.93045 0.81563 0.71283 1.90566 1.67343 1.37479 1.45950 1.21432 0.86713 0.87762 1.05185 1.43408 1.58904 1.09007 1.06985 1.18796 1.37959 0.99909 0.92003 0.89679 1.25777 0.97459 0.98892 0.94099 1.70001 1.37088 1.42273 1.00916 0.86639 0.81484 0.80130 0.79899 1.19963 1.19488 1.17133 1.21087 0.77786 0.91055 0.82310 1.90556 1.54647 1.71661 1.31595 1.21552 1.05191 0.91611 0.96621 1.22929 0.91665 0.92496 0.89379 0.90970 1.23045 1.02497 0.93639 0.98420 1.23063 1.03576 0.93521 0.97573 1.24356 0.92633 0.93805 0.93105 0.85526 1.20435 0.88024 0.73744 0.77066 1.93186 1.96959 1.38525 1.88501 1.93192 1.96211 1.67533 1.58162 1.93171 1.62613 1.94881 1.65867 1.89353 1.60351 1.44313 1.34499 0.92337 0.84260 0.92393 0.86859 0.86992 0.90734 0.86944 0.88071 0.86925 0.89203 0.89292 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.37 -13.23 10.57 -51.37 -0.54 -13.77 16 3 C 0.45 19.73 7.98 71.24 0.57 20.30 16 4 O -0.53 -25.68 16.01 21.96 0.35 -25.33 16 5 C 0.11 5.10 4.14 85.63 0.35 5.45 16 6 N -0.46 -22.15 1.69 -639.59 -1.08 -23.23 16 7 C -0.36 -18.31 8.97 84.04 0.75 -17.55 16 8 H 0.09 4.54 7.16 -2.91 -0.02 4.51 16 9 C 0.05 2.29 4.98 84.93 0.42 2.72 16 10 N -0.87 -46.04 13.96 21.66 0.30 -45.73 16 11 Si 0.90 38.70 26.54 68.60 1.82 40.52 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 14 H -0.25 -10.31 5.72 99.48 0.57 -9.74 16 15 C 0.49 22.48 7.28 87.66 0.64 23.12 16 16 O -0.60 -29.97 15.06 12.60 0.19 -29.78 16 17 C -0.11 -4.07 4.04 29.85 0.12 -3.94 16 18 C 0.09 2.81 2.80 31.10 0.09 2.90 16 19 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 20 C -0.14 -2.74 6.65 31.67 0.21 -2.53 16 21 C -0.14 -2.42 6.41 31.67 0.20 -2.22 16 22 C 0.02 0.50 3.25 31.10 0.10 0.60 16 23 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 24 C 0.46 11.92 2.86 71.98 0.21 12.13 16 25 F -0.19 -5.80 17.30 44.97 0.78 -5.02 16 26 F -0.17 -3.69 17.15 44.97 0.77 -2.92 16 27 F -0.18 -5.24 16.46 44.97 0.74 -4.50 16 28 O -0.37 -12.58 10.06 -133.34 -1.34 -13.92 16 29 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.11 4.83 7.54 -2.39 -0.02 4.81 16 33 H 0.11 4.82 4.79 -2.39 -0.01 4.81 16 34 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.11 3.90 7.65 -2.39 -0.02 3.89 16 36 H 0.10 3.70 8.12 -2.39 -0.02 3.69 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.76 7.87 -2.39 -0.02 1.74 16 39 H 0.09 1.52 7.28 -2.39 -0.02 1.51 16 40 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -68.77 350.30 7.81 -60.97 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.95 Total: 19.78 kcal Atomic # 6 Polarization: 38.07 SS G_CDS: 4.86 Total: 42.93 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -0.78 Total: -68.96 kcal Atomic # 8 Polarization: -81.46 SS G_CDS: -1.34 Total: -82.80 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 2.29 Total: -12.44 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.82 Total: 40.52 kcal Total: -68.77 7.81 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.037 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -328.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -321.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds