Wall clock time and date at job start Tue Mar 31 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00225 * 2 1 4 4 O 1.20819 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00108 * 270.00431 * 6 5 3 8 8 H 1.08001 * 119.99639 * 202.99339 * 7 6 5 9 9 C 1.38952 * 120.00091 * 22.98601 * 7 6 5 10 10 N 1.31415 * 119.99969 * 351.29773 * 9 7 6 11 11 Si 1.86799 * 120.00007 * 171.29355 * 9 7 6 12 12 H 1.48501 * 109.47224 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47150 * 120.00097 * 11 9 7 14 14 H 1.48497 * 109.46906 * 240.00469 * 11 9 7 15 15 C 1.34780 * 119.99631 * 90.00163 * 6 5 3 16 16 O 1.21292 * 120.00119 * 355.04263 * 15 6 5 17 17 C 1.50694 * 119.99503 * 175.31849 * 15 6 5 18 18 C 1.52999 * 109.46957 * 184.99056 * 17 15 6 19 19 H 1.09004 * 109.82511 * 305.56622 * 18 17 15 20 20 C 1.54385 * 109.83369 * 184.58973 * 18 17 15 21 21 C 1.55302 * 102.25363 * 219.13291 * 20 18 17 22 22 C 1.54951 * 100.94407 * 34.12779 * 21 20 18 23 23 H 1.08996 * 110.30566 * 82.47274 * 22 21 20 24 24 C 1.52997 * 110.39106 * 204.59894 * 22 21 20 25 25 F 1.39902 * 109.46723 * 177.21492 * 24 22 21 26 26 F 1.39901 * 109.47512 * 297.21533 * 24 22 21 27 27 F 1.39905 * 109.47289 * 57.21840 * 24 22 21 28 28 O 1.43236 * 109.83309 * 66.45477 * 18 17 15 29 29 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46530 * 299.99611 * 1 2 3 31 31 H 1.08994 * 109.47467 * 59.99089 * 1 2 3 32 32 H 1.08997 * 109.47130 * 60.00429 * 5 3 2 33 33 H 1.08997 * 109.47406 * 300.00165 * 5 3 2 34 34 H 0.96995 * 119.99846 * 185.00831 * 10 9 7 35 35 H 1.09004 * 109.47312 * 304.99080 * 17 15 6 36 36 H 1.09005 * 109.47493 * 64.99225 * 17 15 6 37 37 H 1.09008 * 110.84310 * 337.31608 * 20 18 17 38 38 H 1.08997 * 110.85123 * 100.93662 * 20 18 17 39 39 H 1.08999 * 111.12468 * 276.21279 * 21 20 18 40 40 H 1.08999 * 111.16402 * 152.06469 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1756 3.3378 -1.1867 8 1 4.8140 4.2082 -1.2235 9 6 3.5509 2.8850 -2.3424 10 7 2.9153 1.7348 -2.3381 11 14 3.6144 3.9113 -3.9019 12 1 4.3861 5.1539 -3.6457 13 1 4.2746 3.1326 -4.9803 14 1 2.2335 4.2629 -4.3195 15 6 4.1734 3.3251 1.1678 16 8 3.9158 2.7718 2.2159 17 6 4.7018 4.7363 1.1706 18 6 4.9431 5.1876 2.6125 19 1 4.0325 5.0585 3.1975 20 6 5.3747 6.6698 2.6322 21 6 6.4628 6.6816 3.7401 22 6 7.0985 5.2823 3.5430 23 1 7.8328 5.3104 2.7380 24 6 7.7532 4.8064 4.8414 25 9 8.2647 3.5169 4.6603 26 9 8.7932 5.6766 5.1855 27 9 6.8003 4.7906 5.8656 28 8 6.0051 4.4199 3.1907 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 3.9557 0.7809 -0.8908 33 1 3.9565 0.7804 0.8891 34 1 2.5417 1.3841 -3.1617 35 1 5.6396 4.7743 0.6162 36 1 3.9744 5.3977 0.6998 37 1 5.7966 6.9637 1.6710 38 1 4.5381 7.3139 2.9031 39 1 6.0150 6.7737 4.7296 40 1 7.1925 7.4725 3.5667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933219507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:41 Heat of formation + Delta-G solvation = -305.107459 kcal Electronic energy + Delta-G solvation = -31097.583840 eV Core-core repulsion = 26077.461017 eV Total energy + Delta-G solvation = -5020.122824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.06603 -47.62270 -47.50715 -39.85938 -39.25224 -38.03388 -35.40227 -34.51847 -32.41228 -32.01313 -31.52354 -29.01454 -27.69262 -26.17093 -24.88089 -23.91823 -21.87409 -21.31141 -20.08368 -19.18998 -18.68288 -18.24309 -17.94826 -17.05531 -16.58508 -16.43674 -16.17830 -15.47394 -15.32697 -15.07062 -14.53229 -14.40627 -14.37096 -14.23766 -14.01170 -13.92743 -13.69015 -13.68670 -13.53254 -13.32597 -12.91171 -12.62539 -12.39992 -12.24318 -11.88821 -11.54435 -11.48078 -11.33270 -11.22062 -11.12226 -11.07128 -10.90931 -10.74034 -10.56660 -10.42419 -9.77797 -9.56146 -9.45923 -8.98752 -8.55620 -7.93383 -6.44390 -4.07335 2.57552 3.06147 3.15045 3.18986 3.39136 3.56677 3.73998 3.77731 3.95928 4.02382 4.09740 4.35960 4.44472 4.60250 4.75653 4.89330 5.00718 5.07847 5.16970 5.47669 5.58814 5.64834 5.72263 5.74093 5.81390 5.89626 5.99023 6.05894 6.26011 6.37517 6.44016 6.57772 6.93104 6.98844 7.29815 7.54072 7.67986 8.24449 8.97744 9.18957 9.38287 9.79084 10.57543 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.003463 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.419750 B = 8083.160391 C = 9160.384077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.492 3.508 4 O -0.515 6.515 5 C 0.157 3.843 6 N -0.438 5.438 7 C -0.325 4.325 8 H 0.102 0.898 9 C 0.040 3.960 10 N -0.886 5.886 11 Si 0.932 3.068 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.476 3.524 16 O -0.589 6.589 17 C -0.130 4.130 18 C 0.098 3.902 19 H 0.094 0.906 20 C -0.147 4.147 21 C -0.150 4.150 22 C 0.032 3.968 23 H 0.112 0.888 24 C 0.456 3.544 25 F -0.175 7.175 26 F -0.183 7.183 27 F -0.177 7.177 28 O -0.333 6.333 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.272 0.728 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 7.137 6.394 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.334 3.666 4 O -0.401 6.401 5 C 0.031 3.969 6 N -0.158 5.158 7 C -0.452 4.452 8 H 0.120 0.880 9 C -0.162 4.162 10 N -0.526 5.526 11 Si 0.759 3.241 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.265 3.735 16 O -0.473 6.473 17 C -0.170 4.170 18 C 0.040 3.960 19 H 0.112 0.888 20 C -0.185 4.185 21 C -0.188 4.188 22 C -0.029 4.029 23 H 0.130 0.870 24 C 0.401 3.599 25 F -0.157 7.157 26 F -0.164 7.164 27 F -0.158 7.158 28 O -0.252 6.252 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.673 6.844 6.821 11.205 hybrid contribution -0.236 0.557 -0.977 1.149 sum 5.436 7.401 5.844 10.885 Atomic orbital electron populations 1.22903 0.79070 1.01695 1.01415 1.86470 1.21363 1.35652 1.85658 1.23998 0.92374 0.80348 0.69867 1.90483 1.66716 1.36495 1.46427 1.20644 0.86911 0.85548 1.03755 1.43344 1.58601 1.08513 1.05355 1.19674 1.27587 1.12654 0.85320 0.88027 1.25276 0.94478 0.96346 1.00137 1.69616 1.36651 1.17970 1.28387 0.85782 0.78090 0.79592 0.80597 1.19350 1.20708 1.20657 1.20048 0.81995 0.87838 0.83576 1.90577 1.56348 1.68707 1.31698 1.21823 1.02938 0.96730 0.95549 1.22714 0.90631 0.88191 0.94447 0.88768 1.23224 0.98917 0.97081 0.99239 1.23325 0.99002 0.94961 1.01498 1.24095 0.94055 0.92038 0.92672 0.87048 1.20544 0.76743 0.75546 0.87031 1.93214 1.87597 1.39530 1.95338 1.93168 1.60077 1.69840 1.93343 1.93184 1.64049 1.96193 1.62404 1.88737 1.25040 1.30537 1.80880 0.89686 0.93278 0.92862 0.84534 0.90806 0.91688 0.89444 0.88122 0.89506 0.89053 0.89161 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.36 10.57 -39.26 -0.41 -8.77 16 3 C 0.49 12.47 5.92 36.01 0.21 12.69 16 4 O -0.52 -14.44 15.94 -18.74 -0.30 -14.74 16 5 C 0.16 3.86 5.21 -5.19 -0.03 3.83 16 6 N -0.44 -10.90 2.11 -116.09 -0.25 -11.15 16 7 C -0.33 -7.89 9.14 -14.93 -0.14 -8.03 16 8 H 0.10 2.25 6.50 -52.49 -0.34 1.91 16 9 C 0.04 0.99 5.41 -17.47 -0.09 0.89 16 10 N -0.89 -22.57 8.21 55.50 0.46 -22.11 16 11 Si 0.93 19.19 29.57 -169.99 -5.03 14.17 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 C 0.48 11.32 7.48 -10.99 -0.08 11.24 16 16 O -0.59 -15.52 15.20 -3.25 -0.05 -15.57 16 17 C -0.13 -2.36 3.81 -27.89 -0.11 -2.47 16 18 C 0.10 1.54 3.05 -26.01 -0.08 1.46 16 19 H 0.09 1.64 7.87 -51.93 -0.41 1.23 16 20 C -0.15 -1.55 6.54 -24.79 -0.16 -1.72 16 21 C -0.15 -1.46 6.37 -24.48 -0.16 -1.62 16 22 C 0.03 0.40 3.41 -25.70 -0.09 0.31 16 23 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 24 C 0.46 6.04 2.90 37.16 0.11 6.14 16 25 F -0.18 -2.66 17.29 2.25 0.04 -2.62 16 26 F -0.18 -2.12 17.14 2.25 0.04 -2.09 16 27 F -0.18 -2.55 16.50 2.25 0.04 -2.51 16 28 O -0.33 -5.75 10.09 -44.02 -0.44 -6.19 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 31 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.14 3.36 6.28 -51.93 -0.33 3.04 16 33 H 0.07 1.75 7.49 -51.93 -0.39 1.36 16 34 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 35 H 0.09 1.46 7.57 -51.93 -0.39 1.07 16 36 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.09 0.81 7.85 -51.92 -0.41 0.40 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.87 7.45 -51.93 -0.39 0.49 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -32.30 350.03 -4.92 -37.22 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.75 Total: 4.50 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 0.46 Total: 24.59 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.21 Total: -33.26 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -1.21 Total: -45.27 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.30 -4.92 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.889 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -305.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds