Wall clock time and date at job start Tue Mar 31 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00225 * 2 1 4 4 O 1.20819 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.37093 * 120.00108 * 270.00431 * 6 5 3 8 8 H 1.08001 * 119.99639 * 202.99339 * 7 6 5 9 9 C 1.38952 * 120.00091 * 22.98601 * 7 6 5 10 10 N 1.31415 * 119.99969 * 351.29773 * 9 7 6 11 11 Si 1.86799 * 120.00007 * 171.29355 * 9 7 6 12 12 H 1.48501 * 109.47224 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47150 * 120.00097 * 11 9 7 14 14 H 1.48497 * 109.46906 * 240.00469 * 11 9 7 15 15 C 1.34780 * 119.99631 * 90.00163 * 6 5 3 16 16 O 1.21292 * 120.00119 * 355.04263 * 15 6 5 17 17 C 1.50694 * 119.99503 * 175.31849 * 15 6 5 18 18 C 1.52999 * 109.46957 * 184.99056 * 17 15 6 19 19 H 1.09004 * 109.82511 * 305.56622 * 18 17 15 20 20 C 1.54385 * 109.83369 * 184.58973 * 18 17 15 21 21 C 1.55302 * 102.25363 * 219.13291 * 20 18 17 22 22 C 1.54951 * 100.94407 * 34.12779 * 21 20 18 23 23 H 1.08996 * 110.30566 * 82.47274 * 22 21 20 24 24 C 1.52997 * 110.39106 * 204.59894 * 22 21 20 25 25 F 1.39902 * 109.46723 * 177.21492 * 24 22 21 26 26 F 1.39901 * 109.47512 * 297.21533 * 24 22 21 27 27 F 1.39905 * 109.47289 * 57.21840 * 24 22 21 28 28 O 1.43236 * 109.83309 * 66.45477 * 18 17 15 29 29 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46530 * 299.99611 * 1 2 3 31 31 H 1.08994 * 109.47467 * 59.99089 * 1 2 3 32 32 H 1.08997 * 109.47130 * 60.00429 * 5 3 2 33 33 H 1.08997 * 109.47406 * 300.00165 * 5 3 2 34 34 H 0.96995 * 119.99846 * 185.00831 * 10 9 7 35 35 H 1.09004 * 109.47312 * 304.99080 * 17 15 6 36 36 H 1.09005 * 109.47493 * 64.99225 * 17 15 6 37 37 H 1.09008 * 110.84310 * 337.31608 * 20 18 17 38 38 H 1.08997 * 110.85123 * 100.93662 * 20 18 17 39 39 H 1.08999 * 111.12468 * 276.21279 * 21 20 18 40 40 H 1.08999 * 111.16402 * 152.06469 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1756 3.3378 -1.1867 8 1 4.8140 4.2082 -1.2235 9 6 3.5509 2.8850 -2.3424 10 7 2.9153 1.7348 -2.3381 11 14 3.6144 3.9113 -3.9019 12 1 4.3861 5.1539 -3.6457 13 1 4.2746 3.1326 -4.9803 14 1 2.2335 4.2629 -4.3195 15 6 4.1734 3.3251 1.1678 16 8 3.9158 2.7718 2.2159 17 6 4.7018 4.7363 1.1706 18 6 4.9431 5.1876 2.6125 19 1 4.0325 5.0585 3.1975 20 6 5.3747 6.6698 2.6322 21 6 6.4628 6.6816 3.7401 22 6 7.0985 5.2823 3.5430 23 1 7.8328 5.3104 2.7380 24 6 7.7532 4.8064 4.8414 25 9 8.2647 3.5169 4.6603 26 9 8.7932 5.6766 5.1855 27 9 6.8003 4.7906 5.8656 28 8 6.0051 4.4199 3.1907 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 3.9557 0.7809 -0.8908 33 1 3.9565 0.7804 0.8891 34 1 2.5417 1.3841 -3.1617 35 1 5.6396 4.7743 0.6162 36 1 3.9744 5.3977 0.6998 37 1 5.7966 6.9637 1.6710 38 1 4.5381 7.3139 2.9031 39 1 6.0150 6.7737 4.7296 40 1 7.1925 7.4725 3.5667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933219507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:41 Heat of formation + Delta-G solvation = -324.540230 kcal Electronic energy + Delta-G solvation = -31098.426509 eV Core-core repulsion = 26077.461017 eV Total energy + Delta-G solvation = -5020.965492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.11806 -48.63860 -48.62414 -41.39565 -40.82193 -39.75340 -37.28076 -36.45040 -33.59601 -33.36752 -33.11473 -30.62420 -29.07076 -27.79281 -26.55199 -25.18280 -22.83370 -22.59132 -21.78445 -21.00588 -19.72109 -19.30051 -19.06241 -18.74708 -18.42995 -17.96816 -17.57520 -17.22824 -16.95185 -16.52093 -16.08090 -15.97076 -15.58681 -15.39886 -15.37757 -15.05653 -14.94791 -14.78392 -14.75606 -14.54019 -14.33183 -14.18077 -14.04244 -13.61990 -13.23116 -13.02585 -12.88013 -12.81689 -12.68170 -12.65625 -12.41955 -12.21095 -12.13767 -12.00638 -11.81971 -11.57695 -11.45072 -10.92461 -10.71456 -10.41816 -9.84952 -8.28643 -5.97014 1.43035 1.49236 1.56745 1.61446 1.74000 1.88808 2.23899 2.35901 2.38984 2.75673 2.93486 2.98589 3.18154 3.47034 3.49192 3.76765 3.95016 4.03074 4.19016 4.26716 4.31982 4.35717 4.39296 4.46564 4.60959 4.63590 4.73445 4.82504 4.87291 4.93983 4.99104 5.02884 5.26172 5.45951 5.67328 5.81229 5.90244 6.37233 7.11153 7.24760 7.53455 7.94683 8.73702 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.003463 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.419750 B = 8083.160391 C = 9160.384077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.494 3.506 4 O -0.549 6.549 5 C 0.154 3.846 6 N -0.451 5.451 7 C -0.337 4.337 8 H 0.124 0.876 9 C -0.008 4.008 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.246 1.246 13 H -0.278 1.278 14 H -0.296 1.296 15 C 0.460 3.540 16 O -0.625 6.625 17 C -0.121 4.121 18 C 0.095 3.905 19 H 0.066 0.934 20 C -0.133 4.133 21 C -0.140 4.140 22 C 0.024 3.976 23 H 0.134 0.866 24 C 0.454 3.546 25 F -0.192 7.192 26 F -0.171 7.171 27 F -0.187 7.187 28 O -0.372 6.372 29 H 0.133 0.867 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.133 0.867 33 H 0.072 0.928 34 H 0.269 0.731 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 9.394 5.597 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.337 3.663 4 O -0.438 6.438 5 C 0.028 3.972 6 N -0.171 5.171 7 C -0.464 4.464 8 H 0.141 0.859 9 C -0.207 4.207 10 N -0.553 5.553 11 Si 0.823 3.177 12 H -0.169 1.169 13 H -0.204 1.204 14 H -0.223 1.223 15 C 0.251 3.749 16 O -0.512 6.512 17 C -0.161 4.161 18 C 0.038 3.962 19 H 0.084 0.916 20 C -0.170 4.170 21 C -0.177 4.177 22 C -0.035 4.035 23 H 0.152 0.848 24 C 0.400 3.600 25 F -0.173 7.173 26 F -0.152 7.152 27 F -0.169 7.169 28 O -0.292 6.292 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.657 9.096 6.033 12.785 hybrid contribution -0.573 -0.276 -0.661 0.917 sum 6.084 8.820 5.372 11.986 Atomic orbital electron populations 1.23269 0.76433 1.04779 1.01047 1.86434 1.23940 1.34066 1.85028 1.24077 0.92645 0.80582 0.68953 1.90443 1.67481 1.37680 1.48239 1.20630 0.86929 0.86356 1.03264 1.43653 1.58662 1.08552 1.06218 1.20167 1.27949 1.13169 0.85114 0.85865 1.26184 0.94127 0.97191 1.03188 1.69723 1.37464 1.19362 1.28796 0.84767 0.77284 0.78922 0.76722 1.16878 1.20363 1.22279 1.21124 0.81273 0.89855 0.82647 1.90539 1.57754 1.70086 1.32840 1.21860 1.03507 0.92892 0.97826 1.22677 0.89832 0.91536 0.92193 0.91618 1.23207 0.99861 0.93173 1.00797 1.23387 0.99214 0.93959 1.01168 1.24439 0.93527 0.92968 0.92616 0.84831 1.20755 0.76847 0.75112 0.87319 1.93181 1.87827 1.40881 1.95424 1.93187 1.59502 1.69215 1.93294 1.93162 1.64523 1.96215 1.62988 1.88691 1.26441 1.32897 1.81164 0.84884 0.93216 0.93691 0.84975 0.91048 0.92050 0.87690 0.86959 0.87281 0.87169 0.89368 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.56 113.37 1.20 2.55 16 2 O -0.38 -17.07 10.57 -51.43 -0.54 -17.62 16 3 C 0.49 25.69 5.92 71.24 0.42 26.11 16 4 O -0.55 -31.57 15.94 21.98 0.35 -31.22 16 5 C 0.15 7.82 5.21 85.63 0.45 8.27 16 6 N -0.45 -22.78 2.11 -639.59 -1.35 -24.13 16 7 C -0.34 -16.18 9.14 84.04 0.77 -15.42 16 8 H 0.12 5.20 6.50 -2.91 -0.02 5.18 16 9 C -0.01 -0.37 5.41 84.93 0.46 0.09 16 10 N -0.91 -47.03 8.21 21.66 0.18 -46.86 16 11 Si 1.00 38.47 29.57 68.60 2.03 40.50 16 12 H -0.25 -8.47 7.11 99.48 0.71 -7.76 16 13 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 14 H -0.30 -12.07 7.11 99.48 0.71 -11.37 16 15 C 0.46 22.21 7.48 87.65 0.66 22.87 16 16 O -0.63 -34.18 15.20 5.34 0.08 -34.10 16 17 C -0.12 -4.26 3.81 29.85 0.11 -4.14 16 18 C 0.10 2.91 3.05 31.06 0.09 3.00 16 19 H 0.07 2.34 7.87 -2.39 -0.02 2.32 16 20 C -0.13 -2.35 6.54 31.85 0.21 -2.15 16 21 C -0.14 -2.23 6.37 32.05 0.20 -2.03 16 22 C 0.02 0.55 3.41 31.26 0.11 0.66 16 23 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 24 C 0.45 11.55 2.90 71.98 0.21 11.76 16 25 F -0.19 -5.81 17.29 44.97 0.78 -5.03 16 26 F -0.17 -3.62 17.14 44.97 0.77 -2.85 16 27 F -0.19 -5.34 16.50 44.97 0.74 -4.60 16 28 O -0.37 -12.71 10.09 -140.57 -1.42 -14.13 16 29 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 31 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 32 H 0.13 6.75 6.28 -2.39 -0.02 6.73 16 33 H 0.07 3.56 7.49 -2.39 -0.02 3.54 16 34 H 0.27 13.39 8.32 -92.71 -0.77 12.62 16 35 H 0.10 3.28 7.57 -2.38 -0.02 3.26 16 36 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 37 H 0.11 1.49 7.85 -2.38 -0.02 1.48 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.47 7.45 -2.39 -0.02 1.45 16 40 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.83 350.03 7.59 -65.24 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 1.09 Total: 23.21 kcal Atomic # 6 Polarization: 46.69 SS G_CDS: 4.88 Total: 51.58 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.17 Total: -70.99 kcal Atomic # 8 Polarization: -95.54 SS G_CDS: -1.53 Total: -97.07 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 2.29 Total: -12.48 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -72.83 7.59 -65.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.302 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -332.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -324.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds