Wall clock time and date at job start Tue Mar 31 2020 22:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34222 * 116.99851 * 2 1 4 4 O 1.20824 * 120.00289 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99973 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47337 * 179.97438 * 5 3 2 7 7 C 1.37105 * 119.99834 * 263.09989 * 6 5 3 8 8 H 1.07995 * 120.00068 * 142.05917 * 7 6 5 9 9 C 1.38950 * 119.99686 * 322.05858 * 7 6 5 10 10 N 1.31416 * 119.99653 * 158.26358 * 9 7 6 11 11 Si 1.86798 * 120.00331 * 338.25869 * 9 7 6 12 12 H 1.48503 * 109.46811 * 95.91555 * 11 9 7 13 13 H 1.48497 * 109.47419 * 215.91628 * 11 9 7 14 14 H 1.48502 * 109.47102 * 335.92105 * 11 9 7 15 15 C 1.34780 * 120.00432 * 83.09862 * 6 5 3 16 16 O 1.21294 * 119.99591 * 359.97438 * 15 6 5 17 17 C 1.50698 * 119.99953 * 179.72644 * 15 6 5 18 18 C 1.53006 * 109.46793 * 180.27542 * 17 15 6 19 19 H 1.09003 * 109.82110 * 54.11096 * 18 17 15 20 20 C 1.54383 * 109.82731 * 174.99720 * 18 17 15 21 21 C 1.55310 * 102.24830 * 140.86996 * 20 18 17 22 22 C 1.54949 * 100.94236 * 325.86767 * 21 20 18 23 23 H 1.09005 * 110.30479 * 277.52971 * 22 21 20 24 24 C 1.52998 * 110.30787 * 155.36174 * 22 21 20 25 25 F 1.39900 * 109.47211 * 59.99636 * 24 22 21 26 26 F 1.39901 * 109.47163 * 179.97438 * 24 22 21 27 27 F 1.39900 * 109.47124 * 299.99549 * 24 22 21 28 28 O 1.43234 * 109.82844 * 293.13303 * 18 17 15 29 29 H 1.08996 * 109.47130 * 59.99793 * 1 2 3 30 30 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46567 * 300.00248 * 1 2 3 32 32 H 1.08997 * 109.47117 * 59.99183 * 5 3 2 33 33 H 1.09004 * 109.46994 * 300.00032 * 5 3 2 34 34 H 0.97003 * 119.99854 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.47079 * 300.27179 * 17 15 6 36 36 H 1.08995 * 109.47370 * 60.27140 * 17 15 6 37 37 H 1.08995 * 110.84857 * 259.05872 * 20 18 17 38 38 H 1.08994 * 110.85017 * 22.48140 * 20 18 17 39 39 H 1.08996 * 111.12253 * 83.78698 * 21 20 18 40 40 H 1.08997 * 111.12287 * 207.90391 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.3125 3.2963 -1.1801 8 1 4.0340 4.3262 -1.3475 9 6 5.0059 2.5960 -2.1597 10 7 4.9585 2.9954 -3.4108 11 14 6.0057 1.0871 -1.6982 12 1 5.1931 -0.1344 -1.9285 13 1 7.2317 1.0309 -2.5341 14 1 6.3868 1.1651 -0.2650 15 6 4.0388 3.3660 1.1575 16 8 3.7457 2.8206 2.2005 17 6 4.4720 4.8094 1.1576 18 6 4.4563 5.3464 2.5902 19 1 5.0572 4.7029 3.2328 20 6 5.0178 6.7843 2.6167 21 6 4.0886 7.4820 3.6471 22 6 2.7473 6.7565 3.3721 23 1 2.2407 7.2085 2.5193 24 6 1.8519 6.8081 4.6116 25 9 1.5902 8.1419 4.9427 26 9 0.6469 6.1494 4.3442 27 9 2.4994 6.1805 5.6812 28 8 3.1094 5.3986 3.0747 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.9557 0.7808 -0.8907 33 1 3.9565 0.7805 0.8892 34 1 5.4428 2.5067 -4.0946 35 1 5.4809 4.8860 0.7519 36 1 3.7879 5.3942 0.5428 37 1 6.0521 6.7906 2.9604 38 1 4.9340 7.2516 1.6355 39 1 4.4295 7.3041 4.6670 40 1 4.0075 8.5496 3.4432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933219510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:44 Heat of formation + Delta-G solvation = -323.144505 kcal Electronic energy + Delta-G solvation = -31203.986923 eV Core-core repulsion = 26183.081954 eV Total energy + Delta-G solvation = -5020.904969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.15825 -48.68234 -48.65728 -41.75655 -40.98084 -39.95987 -37.56999 -36.71510 -34.01101 -33.59799 -33.15814 -30.86485 -29.19755 -27.85793 -26.82049 -25.25783 -22.93166 -22.73850 -22.05443 -20.87506 -19.76071 -19.34191 -19.21318 -19.04588 -18.82031 -18.17760 -17.62909 -17.45683 -17.08779 -17.00343 -16.48036 -15.82283 -15.67307 -15.53713 -15.42897 -15.09636 -14.92463 -14.82324 -14.79218 -14.74869 -14.57969 -14.46544 -14.28135 -13.90735 -13.69898 -13.39553 -13.02175 -12.85401 -12.83374 -12.70947 -12.45313 -12.24875 -12.16764 -11.95071 -11.84804 -11.83084 -11.68982 -11.16027 -10.75763 -10.52336 -9.89320 -8.52809 -6.18363 1.12294 1.22019 1.34496 1.44575 1.51098 1.53198 2.01765 2.17528 2.33392 2.54611 2.72744 2.94015 2.96445 3.43310 3.45202 3.72689 3.87245 3.93338 3.93904 3.99950 4.08434 4.20524 4.26124 4.27789 4.28820 4.56876 4.59231 4.60906 4.80302 4.86259 4.94376 4.98968 5.20974 5.25792 5.31400 5.86956 6.04990 6.16214 6.70339 6.91504 7.31312 7.70243 8.60976 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013007 B = 0.003979 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.212869 B = 7034.601869 C = 8441.003842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.449 3.551 4 O -0.525 6.525 5 C 0.101 3.899 6 N -0.464 5.464 7 C -0.345 4.345 8 H 0.082 0.918 9 C 0.031 3.969 10 N -0.890 5.890 11 Si 0.913 3.087 12 H -0.255 1.255 13 H -0.275 1.275 14 H -0.252 1.252 15 C 0.488 3.512 16 O -0.602 6.602 17 C -0.123 4.123 18 C 0.093 3.907 19 H 0.081 0.919 20 C -0.134 4.134 21 C -0.138 4.138 22 C 0.022 3.978 23 H 0.124 0.876 24 C 0.455 3.545 25 F -0.170 7.170 26 F -0.194 7.194 27 F -0.184 7.184 28 O -0.374 6.374 29 H 0.057 0.943 30 H 0.142 0.858 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.282 0.718 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 5.534 10.111 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.291 3.709 4 O -0.413 6.413 5 C -0.024 4.024 6 N -0.187 5.187 7 C -0.472 4.472 8 H 0.100 0.900 9 C -0.175 4.175 10 N -0.526 5.526 11 Si 0.736 3.264 12 H -0.180 1.180 13 H -0.201 1.201 14 H -0.175 1.175 15 C 0.280 3.720 16 O -0.487 6.487 17 C -0.162 4.162 18 C 0.036 3.964 19 H 0.099 0.901 20 C -0.171 4.171 21 C -0.175 4.175 22 C -0.037 4.037 23 H 0.142 0.858 24 C 0.401 3.599 25 F -0.151 7.151 26 F -0.175 7.175 27 F -0.166 7.166 28 O -0.293 6.293 29 H 0.076 0.924 30 H 0.160 0.840 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.352 5.359 10.466 11.763 hybrid contribution -0.335 -0.651 -0.269 0.780 sum -0.686 4.708 10.197 11.252 Atomic orbital electron populations 1.23547 0.74971 1.05872 1.02089 1.86488 1.25113 1.32533 1.84140 1.24785 0.93103 0.81580 0.71420 1.90596 1.67347 1.37586 1.45750 1.21487 0.87136 0.88280 1.05466 1.43547 1.58983 1.08846 1.07278 1.18904 1.36718 0.99403 0.92138 0.90006 1.25921 0.96579 1.00765 0.94188 1.69844 1.39519 1.42477 1.00751 0.86312 0.79747 0.80064 0.80233 1.18041 1.20081 1.17541 1.21148 0.78433 0.90473 0.81982 1.90562 1.53832 1.71819 1.32471 1.21880 1.04838 0.91576 0.97949 1.22778 0.81861 0.98714 0.93086 0.90065 1.23208 1.01582 0.91143 1.01188 1.23380 0.90055 1.02348 1.01744 1.24408 0.98329 0.87202 0.93795 0.85820 1.20703 0.79718 0.73406 0.86056 1.93187 1.94435 1.34047 1.93474 1.93179 1.48838 1.81585 1.93921 1.93162 1.81155 1.82785 1.59465 1.88705 1.31901 1.23516 1.85199 0.92392 0.84014 0.92615 0.87043 0.86104 0.90772 0.85858 0.89372 0.86405 0.88066 0.88818 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.00 16 2 O -0.37 -13.70 10.57 -51.34 -0.54 -14.25 16 3 C 0.45 20.36 7.98 71.24 0.57 20.93 16 4 O -0.52 -27.11 16.01 21.97 0.35 -26.76 16 5 C 0.10 4.51 4.49 85.63 0.38 4.90 16 6 N -0.46 -22.32 1.74 -639.60 -1.11 -23.43 16 7 C -0.34 -17.53 9.05 84.04 0.76 -16.77 16 8 H 0.08 4.45 7.25 -2.91 -0.02 4.43 16 9 C 0.03 1.54 5.27 84.93 0.45 1.99 16 10 N -0.89 -47.30 13.96 21.66 0.30 -47.00 16 11 Si 0.91 37.72 25.01 68.60 1.72 39.44 16 12 H -0.25 -9.86 6.71 99.48 0.67 -9.19 16 13 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 14 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 15 C 0.49 22.60 7.27 87.66 0.64 23.24 16 16 O -0.60 -30.46 15.20 8.32 0.13 -30.33 16 17 C -0.12 -4.44 3.97 29.85 0.12 -4.33 16 18 C 0.09 2.82 3.04 31.07 0.09 2.92 16 19 H 0.08 2.61 7.94 -2.39 -0.02 2.59 16 20 C -0.13 -2.46 6.55 31.86 0.21 -2.25 16 21 C -0.14 -2.34 6.31 32.05 0.20 -2.14 16 22 C 0.02 0.56 3.42 31.26 0.11 0.67 16 23 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 24 C 0.46 12.29 2.90 71.98 0.21 12.50 16 25 F -0.17 -3.85 17.07 44.97 0.77 -3.09 16 26 F -0.19 -6.27 17.31 44.97 0.78 -5.49 16 27 F -0.18 -5.35 16.58 44.97 0.75 -4.61 16 28 O -0.37 -13.32 9.97 -137.59 -1.37 -14.69 16 29 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.11 4.79 3.67 -2.39 -0.01 4.78 16 33 H 0.12 4.97 7.64 -2.38 -0.02 4.95 16 34 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.12 3.96 8.09 -2.39 -0.02 3.94 16 36 H 0.09 3.27 7.67 -2.39 -0.02 3.25 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.64 7.85 -2.39 -0.02 1.62 16 39 H 0.09 1.54 7.54 -2.39 -0.02 1.53 16 40 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.54 349.91 7.75 -63.79 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 1.05 Total: 22.75 kcal Atomic # 6 Polarization: 38.72 SS G_CDS: 4.93 Total: 43.66 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -0.81 Total: -70.43 kcal Atomic # 8 Polarization: -84.59 SS G_CDS: -1.44 Total: -86.03 kcal Atomic # 9 Polarization: -15.48 SS G_CDS: 2.29 Total: -13.19 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.72 Total: 39.44 kcal Total: -71.54 7.75 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933219510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.357 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -330.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -323.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds