Wall clock time and date at job start Tue Mar 31 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99861 * 2 1 4 4 H 1.48502 * 109.46996 * 85.01896 * 3 2 1 5 5 H 1.48507 * 109.47021 * 205.01683 * 3 2 1 6 6 H 1.48500 * 109.47275 * 325.01411 * 3 2 1 7 7 C 1.38814 * 119.99604 * 180.27438 * 2 1 3 8 8 H 1.08002 * 119.99393 * 186.50499 * 7 2 1 9 9 N 1.36932 * 120.00287 * 6.50803 * 7 2 1 10 10 C 1.47063 * 136.05926 * 6.93620 * 9 7 2 11 11 C 1.53754 * 87.88814 * 152.96853 * 10 9 7 12 12 N 1.46902 * 114.39705 * 272.67636 * 11 10 9 13 13 C 1.46898 * 110.99759 * 32.88731 * 12 11 10 14 14 C 1.53234 * 109.33932 * 172.74592 * 13 12 11 15 15 N 1.47082 * 108.52165 * 53.83366 * 14 13 12 16 16 C 1.34772 * 120.88272 * 128.79443 * 15 14 13 17 17 O 1.21738 * 120.00144 * 176.91276 * 16 15 14 18 18 C 1.46293 * 120.00037 * 356.90536 * 16 15 14 19 19 S 1.75818 * 125.46297 * 49.96220 * 18 16 15 20 20 C 1.70597 * 91.60927 * 179.97438 * 19 18 16 21 21 C 1.33736 * 111.03673 * 359.97438 * 20 19 18 22 22 C 1.36929 * 125.46344 * 229.64964 * 18 16 15 23 23 F 1.35092 * 123.40807 * 0.02562 * 22 18 16 24 24 C 1.47080 * 118.23284 * 308.81132 * 15 14 13 25 25 C 1.46894 * 111.00013 * 268.58924 * 12 11 10 26 26 C 1.47067 * 136.05560 * 187.31405 * 9 7 2 27 27 H 0.96998 * 120.00118 * 0.02562 * 1 2 3 28 28 H 1.09000 * 113.46864 * 267.70402 * 10 9 7 29 29 H 1.09003 * 113.46958 * 38.14079 * 10 9 7 30 30 H 1.09007 * 114.26635 * 139.79265 * 11 10 9 31 31 H 1.09009 * 109.49531 * 292.70891 * 13 12 11 32 32 H 1.09003 * 109.49321 * 52.78345 * 13 12 11 33 33 H 1.09000 * 109.62943 * 294.12105 * 14 13 12 34 34 H 1.09009 * 109.62780 * 173.54331 * 14 13 12 35 35 H 1.07996 * 124.48441 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.45074 * 180.02562 * 21 20 19 37 37 H 1.08996 * 109.62887 * 291.47567 * 24 15 14 38 38 H 1.09003 * 109.62703 * 170.89399 * 24 15 14 39 39 H 1.09007 * 109.49341 * 307.20830 * 25 12 11 40 40 H 1.09001 * 109.49582 * 67.28728 * 25 12 11 41 41 H 1.08996 * 113.46949 * 321.86421 * 26 9 7 42 42 H 1.09008 * 113.46551 * 92.24023 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5921 6 1 1.5042 2.6199 -0.8028 7 6 2.0102 -1.2022 -0.0058 8 1 3.0850 -1.2057 0.1002 9 7 1.3321 -2.3836 -0.1458 10 6 -0.0546 -2.7812 -0.4315 11 6 0.5022 -4.0833 -1.0303 12 7 0.8592 -3.9931 -2.4524 13 6 1.3461 -2.6486 -2.7887 14 6 1.8758 -2.6456 -4.2266 15 7 0.8237 -3.1658 -5.1131 16 6 0.4501 -2.4869 -6.2158 17 8 -0.3822 -2.9589 -6.9684 18 6 1.0447 -1.1826 -6.5083 19 16 2.7663 -0.8260 -6.5203 20 6 2.4748 0.8038 -6.9316 21 6 1.1640 1.0425 -7.0478 22 6 0.3500 -0.0452 -6.8224 23 9 -0.9977 0.0055 -6.9001 24 6 0.1900 -4.4463 -4.7641 25 6 -0.2733 -4.3784 -3.3050 26 6 1.6688 -3.8132 -0.0701 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6548 -2.9375 0.4648 29 1 -0.5477 -2.1412 -1.1633 30 1 -0.0796 -4.9726 -0.7877 31 1 0.5285 -1.9330 -2.7007 32 1 2.1482 -2.3707 -2.1049 33 1 2.7583 -3.2818 -4.2930 34 1 2.1319 -1.6276 -4.5203 35 1 3.2466 1.5446 -7.0795 36 1 0.7727 2.0161 -7.3035 37 1 0.9105 -5.2556 -4.8822 38 1 -0.6685 -4.6189 -5.4132 39 1 -0.6456 -5.3551 -2.9958 40 1 -1.0683 -3.6389 -3.2098 41 1 2.6441 -4.0525 -0.4939 42 1 1.5240 -4.2413 0.9218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941401051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:01 Heat of formation + Delta-G solvation = 51.071406 kcal Electronic energy + Delta-G solvation = -28393.232618 eV Core-core repulsion = 24417.830021 eV Total energy + Delta-G solvation = -3975.402597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.89987 -40.21376 -39.02955 -37.42730 -36.41051 -33.53266 -32.05089 -31.06269 -29.84580 -28.12333 -26.35097 -24.91514 -24.64892 -23.50298 -22.90706 -21.66026 -20.25593 -19.45941 -18.97612 -17.90078 -16.89850 -16.82063 -16.51862 -15.78502 -15.44655 -15.21783 -14.99878 -14.92727 -14.59879 -14.45185 -14.17722 -13.88768 -13.68395 -13.40917 -12.92950 -12.84983 -12.69689 -12.53952 -12.04464 -11.74616 -11.45770 -11.32174 -11.26409 -11.05075 -10.99437 -10.83922 -10.60714 -10.54287 -10.15874 -10.00971 -9.88587 -9.41208 -9.05261 -8.82971 -8.56701 -8.52124 -7.65478 -6.88017 -5.85866 -3.17679 0.32944 1.08672 1.58040 2.11155 2.75472 3.13532 3.31456 3.36720 3.39651 4.16990 4.31198 4.38893 4.46909 4.80412 5.07763 5.10626 5.19082 5.30254 5.37366 5.40614 5.46047 5.48541 5.58845 5.69135 5.69850 5.76793 5.93411 6.07244 6.12932 6.13885 6.26524 6.40541 6.51503 6.60114 6.65791 6.90722 7.04324 7.13457 7.37115 7.43211 7.61698 7.75650 7.88947 8.11319 8.95294 9.62565 10.58084 11.31747 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.005251 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.866048 B = 5331.545105 C = 7013.391147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.132 3.868 11 C 0.026 3.974 12 N -0.510 5.510 13 C 0.046 3.954 14 C 0.097 3.903 15 N -0.599 5.599 16 C 0.594 3.406 17 O -0.532 6.532 18 C -0.307 4.307 19 S 0.273 5.727 20 C -0.223 4.223 21 C -0.172 4.172 22 C 0.150 3.850 23 F -0.111 7.111 24 C 0.122 3.878 25 C 0.040 3.960 26 C 0.120 3.880 27 H 0.254 0.746 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.180 0.820 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -4.014 -12.643 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.331 5.331 10 C 0.004 3.996 11 C -0.083 4.083 12 N -0.233 5.233 13 C -0.082 4.082 14 C -0.026 4.026 15 N -0.332 5.332 16 C 0.380 3.620 17 O -0.410 6.410 18 C -0.429 4.429 19 S 0.540 5.460 20 C -0.360 4.360 21 C -0.204 4.204 22 C 0.116 3.884 23 F -0.090 7.090 24 C 0.000 4.000 25 C -0.089 4.089 26 C -0.006 4.006 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.197 0.803 36 H 0.174 0.826 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.645 -5.066 -12.852 15.330 hybrid contribution -1.884 2.726 0.300 3.327 sum 4.761 -2.340 -12.553 13.628 Atomic orbital electron populations 1.69850 1.05054 1.25408 1.55733 1.24813 0.95527 0.97529 1.02135 0.86228 0.78853 0.83851 0.77654 1.21621 1.20306 1.21637 1.18891 0.90321 0.81535 1.44146 0.90058 1.45894 1.05685 0.99479 1.82023 1.22617 0.89018 0.91052 0.96880 1.23454 0.98924 0.98453 0.87511 1.61970 1.31669 1.27107 1.02589 1.22690 1.03032 0.89081 0.93442 1.22423 0.89912 0.99485 0.90806 1.48116 1.38794 1.22486 1.23801 1.16713 0.81535 0.82541 0.81210 1.90824 1.33574 1.68305 1.48309 1.24491 0.99624 0.99061 1.19686 1.83214 0.99577 1.01365 1.61874 1.25164 1.00557 1.03182 1.07116 1.19794 0.92701 1.00219 1.07711 1.16787 0.78373 0.92543 1.00710 1.91548 1.27416 1.96753 1.93265 1.21742 0.98549 0.84217 0.95506 1.22429 0.93072 1.01105 0.92321 1.22522 0.96530 0.86509 0.95085 0.93643 0.95267 0.92330 0.90016 0.93196 0.85513 0.90517 0.89846 0.80295 0.82557 0.90591 0.88994 0.89832 0.94389 0.93445 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.27 11.84 55.49 0.66 -25.61 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 3 Si 0.90 21.11 29.56 -169.99 -5.02 16.09 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -5.75 9.51 -15.06 -0.14 -5.89 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.60 -14.29 2.15 -184.63 -0.40 -14.68 16 10 C 0.13 2.96 6.31 -8.38 -0.05 2.91 16 11 C 0.03 0.47 4.37 -67.46 -0.30 0.18 16 12 N -0.51 -8.49 4.77 -225.95 -1.08 -9.56 16 13 C 0.05 0.84 4.35 -3.70 -0.02 0.83 16 14 C 0.10 1.47 6.03 -3.60 -0.02 1.45 16 15 N -0.60 -9.39 3.01 -174.14 -0.52 -9.91 16 16 C 0.59 10.18 7.45 -13.03 -0.10 10.08 16 17 O -0.53 -10.52 16.57 5.16 0.09 -10.43 16 18 C -0.31 -4.65 5.28 -36.82 -0.19 -4.84 16 19 S 0.27 2.96 20.34 -107.50 -2.19 0.77 16 20 C -0.22 -2.17 10.91 29.15 0.32 -1.85 16 21 C -0.17 -2.01 10.15 -41.35 -0.42 -2.43 16 22 C 0.15 2.27 7.50 -40.25 -0.30 1.97 16 23 F -0.11 -1.91 17.23 2.25 0.04 -1.87 16 24 C 0.12 1.72 6.59 -3.60 -0.02 1.70 16 25 C 0.04 0.59 5.61 -3.70 -0.02 0.57 16 26 C 0.12 2.32 7.94 -8.51 -0.07 2.25 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.48 6.21 -51.93 -0.32 1.16 16 30 H 0.08 1.27 8.01 -51.92 -0.42 0.85 16 31 H 0.05 1.12 6.59 -51.92 -0.34 0.78 16 32 H 0.13 2.63 5.14 -51.93 -0.27 2.37 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.23 4.53 -40.42 -0.18 1.05 16 35 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.32 7.08 -51.93 -0.37 0.95 16 39 H 0.08 1.04 8.02 -51.93 -0.42 0.63 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -31.75 350.97 -9.81 -41.56 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.24 Total: 1.62 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.43 Total: 6.75 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -1.34 Total: -59.77 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.19 Total: 0.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.75 -9.81 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941401051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.632 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds