Wall clock time and date at job start Tue Mar 31 2020 22:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99861 * 2 1 4 4 H 1.48502 * 109.46996 * 85.01896 * 3 2 1 5 5 H 1.48507 * 109.47021 * 205.01683 * 3 2 1 6 6 H 1.48500 * 109.47275 * 325.01411 * 3 2 1 7 7 C 1.38814 * 119.99604 * 180.27438 * 2 1 3 8 8 H 1.08002 * 119.99393 * 186.50499 * 7 2 1 9 9 N 1.36932 * 120.00287 * 6.50803 * 7 2 1 10 10 C 1.47063 * 136.05926 * 6.93620 * 9 7 2 11 11 C 1.53754 * 87.88814 * 152.96853 * 10 9 7 12 12 N 1.46902 * 114.39705 * 272.67636 * 11 10 9 13 13 C 1.46898 * 110.99759 * 32.88731 * 12 11 10 14 14 C 1.53234 * 109.33932 * 172.74592 * 13 12 11 15 15 N 1.47082 * 108.52165 * 53.83366 * 14 13 12 16 16 C 1.34772 * 120.88272 * 128.79443 * 15 14 13 17 17 O 1.21738 * 120.00144 * 176.91276 * 16 15 14 18 18 C 1.46293 * 120.00037 * 356.90536 * 16 15 14 19 19 S 1.75818 * 125.46297 * 49.96220 * 18 16 15 20 20 C 1.70597 * 91.60927 * 179.97438 * 19 18 16 21 21 C 1.33736 * 111.03673 * 359.97438 * 20 19 18 22 22 C 1.36929 * 125.46344 * 229.64964 * 18 16 15 23 23 F 1.35092 * 123.40807 * 0.02562 * 22 18 16 24 24 C 1.47080 * 118.23284 * 308.81132 * 15 14 13 25 25 C 1.46894 * 111.00013 * 268.58924 * 12 11 10 26 26 C 1.47067 * 136.05560 * 187.31405 * 9 7 2 27 27 H 0.96998 * 120.00118 * 0.02562 * 1 2 3 28 28 H 1.09000 * 113.46864 * 267.70402 * 10 9 7 29 29 H 1.09003 * 113.46958 * 38.14079 * 10 9 7 30 30 H 1.09007 * 114.26635 * 139.79265 * 11 10 9 31 31 H 1.09009 * 109.49531 * 292.70891 * 13 12 11 32 32 H 1.09003 * 109.49321 * 52.78345 * 13 12 11 33 33 H 1.09000 * 109.62943 * 294.12105 * 14 13 12 34 34 H 1.09009 * 109.62780 * 173.54331 * 14 13 12 35 35 H 1.07996 * 124.48441 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.45074 * 180.02562 * 21 20 19 37 37 H 1.08996 * 109.62887 * 291.47567 * 24 15 14 38 38 H 1.09003 * 109.62703 * 170.89399 * 24 15 14 39 39 H 1.09007 * 109.49341 * 307.20830 * 25 12 11 40 40 H 1.09001 * 109.49582 * 67.28728 * 25 12 11 41 41 H 1.08996 * 113.46949 * 321.86421 * 26 9 7 42 42 H 1.09008 * 113.46551 * 92.24023 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5921 6 1 1.5042 2.6199 -0.8028 7 6 2.0102 -1.2022 -0.0058 8 1 3.0850 -1.2057 0.1002 9 7 1.3321 -2.3836 -0.1458 10 6 -0.0546 -2.7812 -0.4315 11 6 0.5022 -4.0833 -1.0303 12 7 0.8592 -3.9931 -2.4524 13 6 1.3461 -2.6486 -2.7887 14 6 1.8758 -2.6456 -4.2266 15 7 0.8237 -3.1658 -5.1131 16 6 0.4501 -2.4869 -6.2158 17 8 -0.3822 -2.9589 -6.9684 18 6 1.0447 -1.1826 -6.5083 19 16 2.7663 -0.8260 -6.5203 20 6 2.4748 0.8038 -6.9316 21 6 1.1640 1.0425 -7.0478 22 6 0.3500 -0.0452 -6.8224 23 9 -0.9977 0.0055 -6.9001 24 6 0.1900 -4.4463 -4.7641 25 6 -0.2733 -4.3784 -3.3050 26 6 1.6688 -3.8132 -0.0701 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6548 -2.9375 0.4648 29 1 -0.5477 -2.1412 -1.1633 30 1 -0.0796 -4.9726 -0.7877 31 1 0.5285 -1.9330 -2.7007 32 1 2.1482 -2.3707 -2.1049 33 1 2.7583 -3.2818 -4.2930 34 1 2.1319 -1.6276 -4.5203 35 1 3.2466 1.5446 -7.0795 36 1 0.7727 2.0161 -7.3035 37 1 0.9105 -5.2556 -4.8822 38 1 -0.6685 -4.6189 -5.4132 39 1 -0.6456 -5.3551 -2.9958 40 1 -1.0683 -3.6389 -3.2098 41 1 2.6441 -4.0525 -0.4939 42 1 1.5240 -4.2413 0.9218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941401051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:01 Heat of formation + Delta-G solvation = 30.070403 kcal Electronic energy + Delta-G solvation = -28394.143290 eV Core-core repulsion = 24417.830021 eV Total energy + Delta-G solvation = -3976.313269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.11230 -41.58135 -40.51680 -38.44194 -37.81901 -35.06183 -33.89258 -32.33342 -31.00135 -29.81572 -27.81662 -26.38114 -25.96175 -24.96078 -24.43900 -22.97886 -21.46712 -20.70904 -20.34637 -19.18008 -18.61339 -18.04733 -17.84150 -17.02282 -16.91047 -16.71342 -16.49102 -16.23605 -16.04037 -15.61071 -15.47713 -15.26632 -15.00575 -14.70794 -14.46911 -14.37085 -14.05436 -13.82346 -13.32253 -13.15678 -12.90888 -12.83554 -12.77556 -12.50209 -12.35190 -12.26864 -12.15736 -12.04246 -11.95908 -11.61748 -11.30665 -11.19161 -10.77036 -10.10546 -9.83828 -9.46030 -9.17818 -8.80538 -7.89883 -5.21416 -0.67031 0.12036 0.69485 1.12991 1.45208 1.45988 1.50776 1.55464 1.92650 2.48313 2.90282 3.20245 3.29701 3.35247 3.51496 3.81936 3.85850 3.90255 4.02358 4.19972 4.25657 4.31596 4.43425 4.51810 4.62122 4.62447 4.67965 4.75156 4.80171 4.85629 4.90106 5.03161 5.05888 5.13799 5.18559 5.30303 5.31789 5.46750 5.51138 5.90391 6.05628 6.15225 6.30663 6.83435 6.90737 7.63435 8.64413 9.28195 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.005251 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.866048 B = 5331.545105 C = 7013.391147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.293 1.293 5 H -0.253 1.253 6 H -0.302 1.302 7 C -0.214 4.214 8 H 0.091 0.909 9 N -0.626 5.626 10 C 0.129 3.871 11 C 0.052 3.948 12 N -0.496 5.496 13 C 0.061 3.939 14 C 0.105 3.895 15 N -0.600 5.600 16 C 0.588 3.412 17 O -0.570 6.570 18 C -0.353 4.353 19 S 0.330 5.670 20 C -0.200 4.200 21 C -0.189 4.189 22 C 0.123 3.877 23 F -0.135 7.135 24 C 0.122 3.878 25 C 0.043 3.957 26 C 0.124 3.876 27 H 0.242 0.758 28 H 0.012 0.988 29 H 0.019 0.981 30 H 0.119 0.881 31 H -0.002 1.002 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.007 0.993 41 H 0.062 0.938 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 -4.994 -13.287 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.257 4.257 3 Si 0.792 3.208 4 H -0.221 1.221 5 H -0.177 1.177 6 H -0.229 1.229 7 C -0.342 4.342 8 H 0.109 0.891 9 N -0.353 5.353 10 C 0.001 3.999 11 C -0.058 4.058 12 N -0.219 5.219 13 C -0.068 4.068 14 C -0.018 4.018 15 N -0.332 5.332 16 C 0.376 3.624 17 O -0.452 6.452 18 C -0.474 4.474 19 S 0.597 5.403 20 C -0.338 4.338 21 C -0.219 4.219 22 C 0.088 3.912 23 F -0.114 7.114 24 C 0.000 4.000 25 C -0.086 4.086 26 C -0.001 4.001 27 H 0.051 0.949 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.136 0.864 31 H 0.016 0.984 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.240 0.760 36 H 0.194 0.806 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.025 0.975 41 H 0.080 0.920 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.949 -6.092 -13.484 17.830 hybrid contribution -2.843 2.978 0.525 4.151 sum 7.106 -3.114 -12.959 15.103 Atomic orbital electron populations 1.70053 1.06742 1.25156 1.58349 1.25565 0.96144 1.00756 1.03204 0.85267 0.78619 0.79771 0.77097 1.22079 1.17699 1.22892 1.19269 0.90927 0.82536 1.41490 0.89122 1.46156 1.06261 1.00850 1.81991 1.22590 0.88503 0.93206 0.95604 1.23359 0.97623 0.97008 0.87808 1.62059 1.32129 1.25542 1.02198 1.22372 1.00470 0.88715 0.95260 1.22396 0.90345 1.00632 0.88410 1.48223 1.38776 1.22853 1.23331 1.17057 0.81048 0.83157 0.81109 1.90782 1.35259 1.69492 1.49638 1.24617 1.02672 0.98294 1.21772 1.82914 0.95556 1.01559 1.60312 1.25725 1.00679 1.03460 1.03912 1.19973 0.93082 1.00147 1.08714 1.17427 0.77819 0.94126 1.01817 1.91474 1.29321 1.96959 1.93599 1.21863 0.99206 0.84374 0.94522 1.22525 0.91527 1.01816 0.92688 1.22645 0.97708 0.83632 0.96109 0.94884 0.97064 0.96300 0.86366 0.98398 0.87521 0.87504 0.89540 0.76048 0.80589 0.87738 0.89444 0.86359 0.97479 0.91957 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 11.84 21.65 0.26 -57.09 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.96 43.83 29.56 68.60 2.03 45.86 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 7 C -0.21 -11.11 9.51 84.03 0.80 -10.32 16 8 H 0.09 4.43 7.84 -2.91 -0.02 4.41 16 9 N -0.63 -29.65 2.15 -738.05 -1.59 -31.24 16 10 C 0.13 5.95 6.31 83.26 0.53 6.47 16 11 C 0.05 1.76 4.37 45.47 0.20 1.96 16 12 N -0.50 -15.72 4.77 -868.77 -4.14 -19.86 16 13 C 0.06 2.23 4.35 86.38 0.38 2.61 16 14 C 0.11 3.05 6.03 86.35 0.52 3.57 16 15 N -0.60 -18.51 3.01 -823.06 -2.48 -20.99 16 16 C 0.59 20.53 7.45 86.34 0.64 21.18 16 17 O -0.57 -23.39 16.57 -4.47 -0.07 -23.47 16 18 C -0.35 -10.69 5.28 24.06 0.13 -10.57 16 19 S 0.33 6.33 20.34 -56.49 -1.15 5.18 16 20 C -0.20 -3.24 10.91 66.80 0.73 -2.51 16 21 C -0.19 -4.15 10.15 21.12 0.21 -3.94 16 22 C 0.12 3.82 7.50 21.84 0.16 3.99 16 23 F -0.13 -4.93 17.23 44.97 0.77 -4.16 16 24 C 0.12 3.27 6.59 86.35 0.57 3.84 16 25 C 0.04 1.22 5.61 86.38 0.48 1.70 16 26 C 0.12 4.53 7.94 83.18 0.66 5.19 16 27 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 29 H 0.02 1.01 6.21 -2.39 -0.01 1.00 16 30 H 0.12 3.24 8.01 -2.38 -0.02 3.22 16 31 H 0.00 -0.11 6.59 -2.38 -0.02 -0.13 16 32 H 0.11 4.38 5.14 -2.39 -0.01 4.36 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.09 2.45 4.53 -9.70 -0.04 2.41 16 35 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.48 7.08 -2.39 -0.02 2.46 16 39 H 0.12 2.58 8.02 -2.38 -0.02 2.56 16 40 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -74.68 350.97 1.13 -73.55 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.02 Total: 12.05 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.48 Total: 20.16 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -7.95 Total: -129.18 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.47 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.77 Total: -4.16 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.15 Total: 5.18 kcal Total: -74.68 1.13 -73.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941401051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.624 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds