Wall clock time and date at job start Tue Mar 31 2020 22:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47397 * 274.98495 * 3 2 1 5 5 H 1.48497 * 109.47350 * 34.98912 * 3 2 1 6 6 H 1.48505 * 109.47151 * 154.98765 * 3 2 1 7 7 C 1.38812 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00239 * 172.96581 * 7 2 1 9 9 N 1.36933 * 120.00042 * 352.96883 * 7 2 1 10 10 C 1.47581 * 134.49244 * 183.37374 * 9 7 2 11 11 C 1.53948 * 86.11701 * 155.35832 * 10 9 7 12 12 N 1.46896 * 113.74290 * 137.95430 * 11 10 9 13 13 C 1.46895 * 110.99998 * 181.92350 * 12 11 10 14 14 C 1.53244 * 109.34056 * 187.25303 * 13 12 11 15 15 N 1.47077 * 108.52060 * 306.17158 * 14 13 12 16 16 C 1.34780 * 120.88064 * 231.18819 * 15 14 13 17 17 O 1.21739 * 119.99771 * 356.53818 * 16 15 14 18 18 C 1.46336 * 120.00040 * 176.81579 * 16 15 14 19 19 C 1.36733 * 125.43750 * 223.44790 * 18 16 15 20 20 C 1.37342 * 113.33426 * 179.86059 * 19 18 16 21 21 C 1.34203 * 115.04636 * 0.43005 * 20 19 18 22 22 F 1.35107 * 124.54568 * 179.74065 * 21 20 19 23 23 S 1.70615 * 110.91561 * 359.75921 * 21 20 19 24 24 C 1.47080 * 118.23961 * 51.45611 * 15 14 13 25 25 C 1.46900 * 111.00136 * 306.22359 * 12 11 10 26 26 C 1.47811 * 134.45819 * 3.23972 * 9 7 2 27 27 H 0.97006 * 119.99476 * 359.97438 * 1 2 3 28 28 H 1.08999 * 113.76794 * 41.05517 * 10 9 7 29 29 H 1.09000 * 113.87417 * 269.66838 * 10 9 7 30 30 H 1.09002 * 113.74043 * 269.15262 * 11 10 9 31 31 H 1.09001 * 109.49519 * 67.29616 * 13 12 11 32 32 H 1.08999 * 109.49669 * 307.21299 * 13 12 11 33 33 H 1.09000 * 109.62740 * 186.45875 * 14 13 12 34 34 H 1.08998 * 109.62791 * 65.88375 * 14 13 12 35 35 H 1.07999 * 123.33657 * 0.02562 * 19 18 16 36 36 H 1.07999 * 122.47813 * 180.20508 * 20 19 18 37 37 H 1.08994 * 109.62572 * 68.25216 * 24 15 14 38 38 H 1.08999 * 109.62771 * 188.83590 * 24 15 14 39 39 H 1.08995 * 109.49487 * 292.70892 * 25 12 11 40 40 H 1.09009 * 109.49076 * 52.78774 * 25 12 11 41 41 H 1.09004 * 113.77367 * 90.37698 * 26 9 7 42 42 H 1.09004 * 113.83812 * 318.91940 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2058 -0.1151 9 7 1.3332 -2.3836 0.1441 10 6 1.7351 -3.7997 0.2503 11 6 0.4009 -4.0144 0.9876 12 7 -0.3037 -5.2407 0.5905 13 6 -1.5867 -5.3624 1.2953 14 6 -2.2033 -6.7327 0.9941 15 7 -2.2768 -6.9012 -0.4651 16 6 -3.4288 -7.2663 -1.0621 17 8 -4.4094 -7.5222 -0.3876 18 6 -3.4990 -7.3607 -2.5207 19 6 -4.5263 -6.8999 -3.2965 20 6 -4.3337 -7.1162 -4.6390 21 6 -3.1897 -7.7427 -4.9551 22 9 -2.8099 -8.0555 -6.2134 23 16 -2.2794 -8.0917 -3.5550 24 6 -1.0585 -6.6668 -1.2551 25 6 -0.4887 -5.2935 -0.8659 26 6 -0.0937 -2.7518 0.2590 27 1 -0.4850 0.8401 0.0004 28 1 2.6134 -3.9614 0.8752 29 1 1.7948 -4.3144 -0.7087 30 1 0.4732 -3.8972 2.0689 31 1 -2.2631 -4.5772 0.9578 32 1 -1.4229 -5.2654 2.3685 33 1 -3.2054 -6.7848 1.4197 34 1 -1.5793 -7.5171 1.4223 35 1 -5.4014 -6.4116 -2.8937 36 1 -5.0515 -6.8083 -5.3849 37 1 -0.3266 -7.4450 -1.0389 38 1 -1.3035 -6.6753 -2.3172 39 1 -1.1802 -4.5091 -1.1733 40 1 0.4718 -5.1463 -1.3601 41 1 -0.5732 -2.9564 -0.6983 42 1 -0.6730 -2.0784 0.8908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941682278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:07 Heat of formation + Delta-G solvation = 47.878248 kcal Electronic energy + Delta-G solvation = -27171.262132 eV Core-core repulsion = 23195.721069 eV Total energy + Delta-G solvation = -3975.541063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.40914 -40.47454 -39.07032 -37.76340 -36.60438 -33.88802 -32.02562 -31.33314 -29.77181 -28.06874 -26.43827 -25.14039 -24.89275 -23.87856 -22.88599 -21.98895 -20.59233 -19.74061 -19.06270 -18.09651 -17.25081 -16.86565 -16.72922 -16.33003 -15.96093 -15.56173 -15.30204 -15.01625 -14.87846 -14.80579 -14.38750 -14.13687 -13.81198 -13.49057 -13.13673 -12.97802 -12.43378 -12.33242 -12.28884 -12.14811 -11.90828 -11.66467 -11.39982 -11.23348 -11.06022 -10.87495 -10.76199 -10.59064 -10.26991 -10.16223 -9.93989 -9.57108 -9.11487 -8.96959 -8.85437 -8.75003 -7.89959 -6.90817 -5.81603 -3.13143 0.04565 0.59725 1.17185 1.94692 2.59102 2.88791 3.35942 3.41525 3.43686 3.94904 4.04863 4.20857 4.45416 4.78885 4.89938 4.94136 4.94882 5.08852 5.18675 5.26436 5.32330 5.38663 5.42468 5.45364 5.59061 5.63466 5.64565 5.78473 5.81471 5.92541 6.04533 6.08814 6.26603 6.29947 6.50190 6.58277 6.93009 7.14153 7.16402 7.30967 7.48209 7.55606 7.85794 7.93414 8.99629 9.66762 10.54900 11.35410 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.002914 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.159969 B = 9608.049395 C =10559.750247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.124 3.876 11 C 0.036 3.964 12 N -0.529 5.529 13 C 0.041 3.959 14 C 0.120 3.880 15 N -0.602 5.602 16 C 0.593 3.407 17 O -0.528 6.528 18 C -0.256 4.256 19 C -0.044 4.044 20 C -0.178 4.178 21 C -0.036 4.036 22 F -0.100 7.100 23 S 0.242 5.758 24 C 0.099 3.901 25 C 0.037 3.963 26 C 0.132 3.868 27 H 0.253 0.747 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.101 0.899 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.029 0.971 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 -18.453 -5.469 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.335 5.335 10 C -0.002 4.002 11 C -0.073 4.073 12 N -0.253 5.253 13 C -0.088 4.088 14 C -0.002 4.002 15 N -0.335 5.335 16 C 0.379 3.621 17 O -0.406 6.406 18 C -0.376 4.376 19 C -0.075 4.075 20 C -0.211 4.211 21 C -0.173 4.173 22 F -0.079 7.079 23 S 0.507 5.493 24 C -0.025 4.025 25 C -0.092 4.092 26 C 0.005 3.995 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.046 0.954 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.334 -19.363 -4.803 20.651 hybrid contribution -1.310 2.404 -1.218 2.997 sum -6.644 -16.959 -6.021 19.183 Atomic orbital electron populations 1.69841 1.05082 1.25332 1.56482 1.24783 0.95621 0.97559 1.02319 0.86126 0.78769 0.83523 0.77502 1.21682 1.21581 1.20489 1.19013 0.90810 0.82002 1.43300 0.90175 1.45855 1.02324 0.99815 1.85496 1.22690 0.94870 0.86196 0.96424 1.24281 0.95936 0.87027 1.00057 1.62034 1.19417 1.38713 1.05159 1.22414 0.90748 0.95776 0.99822 1.21823 1.02284 0.97593 0.78488 1.48085 1.09706 1.67127 1.08550 1.16837 0.83042 0.77240 0.84958 1.90850 1.35519 1.50004 1.64207 1.24430 1.01217 1.14237 0.97758 1.20387 0.98181 0.97880 0.91086 1.20267 0.98411 1.04505 0.97880 1.22175 1.00807 1.08718 0.85618 1.91540 1.90589 1.90973 1.34808 1.83653 1.18130 1.55332 0.92157 1.22417 0.85964 0.98846 0.95257 1.22655 1.01848 0.94781 0.89899 1.22938 0.88606 0.91404 0.96541 0.93682 0.93538 0.94544 0.88053 0.93930 0.89337 0.88671 0.90398 0.82135 0.82484 0.89810 0.89701 0.93142 0.88588 0.95374 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 11.42 55.49 0.63 -26.45 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.22 -6.18 10.69 -15.06 -0.16 -6.35 16 8 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 9 N -0.61 -15.17 3.70 -177.86 -0.66 -15.83 16 10 C 0.12 2.43 8.40 -2.97 -0.02 2.40 16 11 C 0.04 0.63 4.05 -69.92 -0.28 0.35 16 12 N -0.53 -7.58 4.77 -227.94 -1.09 -8.67 16 13 C 0.04 0.53 5.55 -3.70 -0.02 0.51 16 14 C 0.12 1.39 6.58 -3.60 -0.02 1.36 16 15 N -0.60 -7.28 3.00 -173.85 -0.52 -7.80 16 16 C 0.59 7.79 7.54 -13.00 -0.10 7.69 16 17 O -0.53 -8.41 16.55 5.15 0.09 -8.32 16 18 C -0.26 -2.82 5.51 -36.87 -0.20 -3.03 16 19 C -0.04 -0.43 10.22 -40.45 -0.41 -0.85 16 20 C -0.18 -1.60 10.16 -41.33 -0.42 -2.02 16 21 C -0.04 -0.35 8.10 29.31 0.24 -0.11 16 22 F -0.10 -1.02 17.32 2.25 0.04 -0.98 16 23 S 0.24 2.16 19.83 -107.50 -2.13 0.03 16 24 C 0.10 1.08 6.00 -3.36 -0.02 1.06 16 25 C 0.04 0.51 4.65 -3.46 -0.02 0.49 16 26 C 0.13 2.98 6.82 -2.84 -0.02 2.96 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.68 5.93 -51.93 -0.31 0.37 16 30 H 0.10 1.80 8.11 -51.93 -0.42 1.38 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.10 1.13 7.08 -51.93 -0.37 0.76 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.85 4.12 -30.71 -0.13 0.72 16 39 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 40 H 0.10 1.35 5.81 -51.92 -0.30 1.05 16 41 H 0.03 0.66 5.76 -51.93 -0.30 0.36 16 42 H 0.07 1.75 7.18 -51.93 -0.37 1.38 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -32.14 350.55 -9.98 -42.12 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.03 Total: -0.49 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.56 Total: 4.22 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -1.63 Total: -58.74 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.13 Total: 0.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.14 -9.98 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941682278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.994 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds