Wall clock time and date at job start Tue Mar 31 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47397 * 274.98495 * 3 2 1 5 5 H 1.48497 * 109.47350 * 34.98912 * 3 2 1 6 6 H 1.48505 * 109.47151 * 154.98765 * 3 2 1 7 7 C 1.38812 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00239 * 172.96581 * 7 2 1 9 9 N 1.36933 * 120.00042 * 352.96883 * 7 2 1 10 10 C 1.47581 * 134.49244 * 183.37374 * 9 7 2 11 11 C 1.53948 * 86.11701 * 155.35832 * 10 9 7 12 12 N 1.46896 * 113.74290 * 137.95430 * 11 10 9 13 13 C 1.46895 * 110.99998 * 181.92350 * 12 11 10 14 14 C 1.53244 * 109.34056 * 187.25303 * 13 12 11 15 15 N 1.47077 * 108.52060 * 306.17158 * 14 13 12 16 16 C 1.34780 * 120.88064 * 231.18819 * 15 14 13 17 17 O 1.21739 * 119.99771 * 356.53818 * 16 15 14 18 18 C 1.46336 * 120.00040 * 176.81579 * 16 15 14 19 19 C 1.36733 * 125.43750 * 223.44790 * 18 16 15 20 20 C 1.37342 * 113.33426 * 179.86059 * 19 18 16 21 21 C 1.34203 * 115.04636 * 0.43005 * 20 19 18 22 22 F 1.35107 * 124.54568 * 179.74065 * 21 20 19 23 23 S 1.70615 * 110.91561 * 359.75921 * 21 20 19 24 24 C 1.47080 * 118.23961 * 51.45611 * 15 14 13 25 25 C 1.46900 * 111.00136 * 306.22359 * 12 11 10 26 26 C 1.47811 * 134.45819 * 3.23972 * 9 7 2 27 27 H 0.97006 * 119.99476 * 359.97438 * 1 2 3 28 28 H 1.08999 * 113.76794 * 41.05517 * 10 9 7 29 29 H 1.09000 * 113.87417 * 269.66838 * 10 9 7 30 30 H 1.09002 * 113.74043 * 269.15262 * 11 10 9 31 31 H 1.09001 * 109.49519 * 67.29616 * 13 12 11 32 32 H 1.08999 * 109.49669 * 307.21299 * 13 12 11 33 33 H 1.09000 * 109.62740 * 186.45875 * 14 13 12 34 34 H 1.08998 * 109.62791 * 65.88375 * 14 13 12 35 35 H 1.07999 * 123.33657 * 0.02562 * 19 18 16 36 36 H 1.07999 * 122.47813 * 180.20508 * 20 19 18 37 37 H 1.08994 * 109.62572 * 68.25216 * 24 15 14 38 38 H 1.08999 * 109.62771 * 188.83590 * 24 15 14 39 39 H 1.08995 * 109.49487 * 292.70892 * 25 12 11 40 40 H 1.09009 * 109.49076 * 52.78774 * 25 12 11 41 41 H 1.09004 * 113.77367 * 90.37698 * 26 9 7 42 42 H 1.09004 * 113.83812 * 318.91940 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2058 -0.1151 9 7 1.3332 -2.3836 0.1441 10 6 1.7351 -3.7997 0.2503 11 6 0.4009 -4.0144 0.9876 12 7 -0.3037 -5.2407 0.5905 13 6 -1.5867 -5.3624 1.2953 14 6 -2.2033 -6.7327 0.9941 15 7 -2.2768 -6.9012 -0.4651 16 6 -3.4288 -7.2663 -1.0621 17 8 -4.4094 -7.5222 -0.3876 18 6 -3.4990 -7.3607 -2.5207 19 6 -4.5263 -6.8999 -3.2965 20 6 -4.3337 -7.1162 -4.6390 21 6 -3.1897 -7.7427 -4.9551 22 9 -2.8099 -8.0555 -6.2134 23 16 -2.2794 -8.0917 -3.5550 24 6 -1.0585 -6.6668 -1.2551 25 6 -0.4887 -5.2935 -0.8659 26 6 -0.0937 -2.7518 0.2590 27 1 -0.4850 0.8401 0.0004 28 1 2.6134 -3.9614 0.8752 29 1 1.7948 -4.3144 -0.7087 30 1 0.4732 -3.8972 2.0689 31 1 -2.2631 -4.5772 0.9578 32 1 -1.4229 -5.2654 2.3685 33 1 -3.2054 -6.7848 1.4197 34 1 -1.5793 -7.5171 1.4223 35 1 -5.4014 -6.4116 -2.8937 36 1 -5.0515 -6.8083 -5.3849 37 1 -0.3266 -7.4450 -1.0389 38 1 -1.3035 -6.6753 -2.3172 39 1 -1.1802 -4.5091 -1.1733 40 1 0.4718 -5.1463 -1.3601 41 1 -0.5732 -2.9564 -0.6983 42 1 -0.6730 -2.0784 0.8908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941682278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:06 Heat of formation + Delta-G solvation = 26.587790 kcal Electronic energy + Delta-G solvation = -27172.185356 eV Core-core repulsion = 23195.721069 eV Total energy + Delta-G solvation = -3976.464287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17764 -41.55454 -40.41123 -38.64653 -37.85371 -35.26551 -33.84720 -32.43761 -30.68691 -29.64127 -27.83355 -26.64270 -25.99107 -24.94685 -24.43397 -23.15958 -21.60994 -20.67349 -20.29465 -19.22895 -18.75500 -18.17270 -17.63377 -17.12446 -17.02114 -16.92042 -16.69059 -16.35046 -16.17195 -15.69488 -15.56802 -15.46799 -15.16956 -14.47851 -14.23746 -14.02486 -13.85688 -13.67880 -13.43371 -13.28328 -13.19120 -13.08081 -12.88247 -12.66851 -12.37250 -12.25659 -12.15896 -11.95360 -11.86102 -11.74661 -11.40563 -11.24985 -10.79670 -10.01820 -9.76574 -9.68264 -9.27921 -8.86159 -7.92286 -5.24733 -0.74762 -0.15264 0.40132 1.16365 1.44717 1.46076 1.55653 1.63722 1.95277 2.44719 2.83183 3.19945 3.29203 3.32148 3.48040 3.78618 3.83048 3.97055 4.10857 4.14235 4.21153 4.24617 4.34544 4.42850 4.45179 4.63162 4.67996 4.70010 4.78243 4.86033 4.88245 4.95061 4.99903 5.06270 5.09483 5.23056 5.31583 5.38150 5.49739 5.90079 6.02319 6.09801 6.20814 6.86660 6.89793 7.59994 8.55131 9.24254 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.002914 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.159969 B = 9608.049395 C =10559.750247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.232 4.232 8 H 0.086 0.914 9 N -0.639 5.639 10 C 0.128 3.872 11 C 0.067 3.933 12 N -0.513 5.513 13 C 0.043 3.957 14 C 0.125 3.875 15 N -0.604 5.604 16 C 0.592 3.408 17 O -0.563 6.563 18 C -0.284 4.284 19 C -0.043 4.043 20 C -0.177 4.177 21 C -0.046 4.046 22 F -0.103 7.103 23 S 0.285 5.715 24 C 0.107 3.893 25 C 0.037 3.963 26 C 0.132 3.868 27 H 0.246 0.754 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.018 0.982 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.023 0.977 40 H 0.097 0.903 41 H 0.018 0.982 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -20.144 -5.862 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.361 4.361 8 H 0.104 0.896 9 N -0.366 5.366 10 C 0.003 3.997 11 C -0.043 4.043 12 N -0.237 5.237 13 C -0.086 4.086 14 C 0.003 3.997 15 N -0.336 5.336 16 C 0.380 3.620 17 O -0.444 6.444 18 C -0.405 4.405 19 C -0.076 4.076 20 C -0.209 4.209 21 C -0.184 4.184 22 F -0.082 7.082 23 S 0.551 5.449 24 C -0.016 4.016 25 C -0.091 4.091 26 C 0.005 3.995 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.037 0.963 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.183 0.817 36 H 0.195 0.805 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.041 0.959 40 H 0.115 0.885 41 H 0.035 0.965 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.030 -21.102 -5.201 22.104 hybrid contribution -1.709 2.872 -1.151 3.534 sum -5.739 -18.230 -6.352 20.140 Atomic orbital electron populations 1.70041 1.06593 1.25466 1.58307 1.25615 0.96437 1.00910 1.03004 0.85088 0.77981 0.79210 0.77227 1.21559 1.22210 1.18935 1.19436 0.91421 0.83415 1.41812 0.89620 1.46244 1.03533 1.01318 1.85539 1.22852 0.96014 0.83245 0.97607 1.23830 0.94731 0.86129 0.99588 1.62091 1.20042 1.35794 1.05756 1.22479 0.89456 0.96100 1.00553 1.21817 1.02394 0.97008 0.78443 1.48193 1.09886 1.66584 1.08910 1.17079 0.82624 0.76574 0.85705 1.90825 1.36591 1.51703 1.65237 1.24385 1.02946 1.15987 0.97172 1.20562 0.98105 0.97428 0.91473 1.20440 0.98674 1.03966 0.97836 1.22369 1.01320 1.08930 0.85742 1.91536 1.90642 1.91019 1.35024 1.83389 1.16589 1.54148 0.90808 1.22458 0.85842 0.97586 0.95757 1.22653 1.01359 0.95841 0.89271 1.22855 0.87478 0.93180 0.96032 0.94465 0.92161 0.92707 0.87541 0.96333 0.87714 0.88987 0.88187 0.81667 0.80522 0.87263 0.88661 0.95895 0.88530 0.96460 0.95339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 11.42 21.65 0.25 -57.75 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.98 45.54 29.56 68.60 2.03 47.57 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.23 -12.89 10.69 84.03 0.90 -11.99 16 8 H 0.09 4.52 7.84 -2.91 -0.02 4.49 16 9 N -0.64 -31.99 3.70 -716.63 -2.65 -34.65 16 10 C 0.13 4.77 8.40 86.49 0.73 5.50 16 11 C 0.07 2.30 4.05 46.67 0.19 2.49 16 12 N -0.51 -13.89 4.77 -875.06 -4.17 -18.06 16 13 C 0.04 1.06 5.55 86.39 0.48 1.54 16 14 C 0.13 2.68 6.58 86.35 0.57 3.25 16 15 N -0.60 -13.72 3.00 -822.12 -2.47 -16.19 16 16 C 0.59 15.10 7.54 86.35 0.65 15.75 16 17 O -0.56 -17.85 16.55 -4.47 -0.07 -17.93 16 18 C -0.28 -5.96 5.51 24.03 0.13 -5.83 16 19 C -0.04 -0.82 10.22 21.71 0.22 -0.60 16 20 C -0.18 -2.89 10.16 21.14 0.21 -2.67 16 21 C -0.05 -0.80 8.10 66.90 0.54 -0.26 16 22 F -0.10 -1.91 17.32 44.97 0.78 -1.13 16 23 S 0.28 4.50 19.83 -56.49 -1.12 3.38 16 24 C 0.11 2.10 6.00 86.50 0.52 2.62 16 25 C 0.04 0.98 4.65 86.54 0.40 1.38 16 26 C 0.13 6.12 6.82 86.44 0.59 6.71 16 27 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 1.89 5.93 -2.39 -0.01 1.88 16 30 H 0.11 3.63 8.11 -2.39 -0.02 3.61 16 31 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 2.28 8.08 -2.39 -0.02 2.26 16 33 H 0.09 2.09 7.08 -2.39 -0.02 2.08 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 1.69 4.12 -15.88 -0.07 1.63 16 39 H 0.02 0.74 6.38 -2.39 -0.02 0.72 16 40 H 0.10 2.53 5.81 -2.38 -0.01 2.52 16 41 H 0.02 0.85 5.76 -2.38 -0.01 0.84 16 42 H 0.03 1.53 7.18 -2.38 -0.02 1.51 16 Total: -1.00 -70.72 350.55 0.17 -70.54 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.01 Total: 9.66 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 6.60 Total: 14.56 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -9.05 Total: -126.65 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.07 Total: -17.93 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.12 Total: 3.38 kcal Total: -70.72 0.17 -70.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941682278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.131 kcal (2) G-P(sol) polarization free energy of solvation -70.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds