Wall clock time and date at job start Tue Mar 31 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48503 * 109.46598 * 5.37759 * 3 2 1 5 5 H 1.48495 * 109.47085 * 125.37205 * 3 2 1 6 6 H 1.48494 * 109.47362 * 245.37425 * 3 2 1 7 7 C 1.38812 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00017 * 5.33026 * 7 2 1 9 9 N 1.36930 * 120.00284 * 185.32852 * 7 2 1 10 10 C 1.47183 * 135.99916 * 353.91381 * 9 7 2 11 11 C 1.52651 * 87.94264 * 206.72076 * 10 9 7 12 12 C 1.47166 * 136.00334 * 174.27329 * 9 7 2 13 13 C 1.52786 * 114.14199 * 220.83420 * 11 10 9 14 14 N 1.47358 * 108.04347 * 178.99495 * 13 11 10 15 15 C 1.34781 * 121.06016 * 228.23063 * 14 13 11 16 16 O 1.21544 * 119.99933 * 359.97438 * 15 14 13 17 17 C 1.47849 * 119.99714 * 180.02562 * 15 14 13 18 18 C 1.40121 * 120.96109 * 89.71592 * 17 15 14 19 19 F 1.35100 * 120.52288 * 0.02562 * 18 17 15 20 20 C 1.38431 * 118.95814 * 179.77395 * 18 17 15 21 21 N 1.31772 * 120.93048 * 0.51478 * 20 18 17 22 22 C 1.31766 * 122.13857 * 359.73285 * 21 20 18 23 23 C 1.38434 * 120.93485 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.52591 * 179.97438 * 23 22 21 25 25 C 1.47137 * 117.87868 * 48.24850 * 14 13 11 26 26 C 1.53223 * 108.72646 * 307.70641 * 25 14 13 27 27 O 1.42353 * 114.14369 * 88.43791 * 11 10 9 28 28 H 0.97002 * 119.99753 * 174.98409 * 1 2 3 29 29 H 1.08993 * 113.48874 * 321.41908 * 10 9 7 30 30 H 1.08999 * 113.49290 * 91.93287 * 10 9 7 31 31 H 1.09000 * 113.49362 * 268.07738 * 12 9 7 32 32 H 1.09006 * 113.48512 * 38.51719 * 12 9 7 33 33 H 1.09004 * 109.74980 * 298.63155 * 13 11 10 34 34 H 1.09000 * 109.75112 * 59.30448 * 13 11 10 35 35 H 1.07998 * 119.53913 * 180.24990 * 20 18 17 36 36 H 1.07999 * 119.53922 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.59329 * 67.47497 * 25 14 13 38 38 H 1.08991 * 109.59640 * 187.93380 * 25 14 13 39 39 H 1.08996 * 109.49198 * 174.15950 * 26 25 14 40 40 H 1.08996 * 109.49249 * 294.20812 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2904 2.7434 0.1312 5 1 3.1996 1.6412 1.1416 6 1 3.0029 1.7548 -1.2727 7 6 2.0103 -1.2021 -0.0005 8 1 1.4738 -2.1354 -0.0878 9 7 3.3752 -1.2047 0.1096 10 6 4.4373 -0.1861 0.1345 11 6 5.3897 -1.2449 -0.4151 12 6 4.4241 -2.2275 0.2486 13 6 6.7815 -1.2207 0.2147 14 7 7.5756 -2.3040 -0.3914 15 6 8.2836 -3.1587 0.3733 16 8 8.2741 -3.0425 1.5831 17 6 9.0728 -4.2369 -0.2597 18 6 10.4064 -4.0286 -0.6356 19 9 10.9999 -2.8332 -0.4255 20 6 11.1081 -5.0686 -1.2209 21 7 10.5358 -6.2362 -1.4342 22 6 9.2833 -6.4742 -1.1014 23 6 8.5066 -5.4947 -0.5066 24 9 7.2231 -5.7475 -0.1692 25 6 7.5712 -2.4226 -1.8580 26 6 6.1186 -2.4612 -2.3440 27 8 5.4181 -1.3211 -1.8363 28 1 -0.4850 -0.8369 -0.0735 29 1 4.2634 0.6398 -0.5553 30 1 4.6939 0.1496 1.1392 31 1 4.6771 -2.4525 1.2847 32 1 4.2386 -3.1233 -0.3441 33 1 7.2581 -0.2603 0.0180 34 1 6.7020 -1.3787 1.2902 35 1 12.1378 -4.9196 -1.5106 36 1 8.8565 -7.4471 -1.2953 37 1 8.0804 -1.5640 -2.2957 38 1 8.0795 -3.3408 -2.1520 39 1 6.0991 -2.4445 -3.4337 40 1 5.6393 -3.3722 -1.9857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053276759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:08 Heat of formation + Delta-G solvation = -36.112515 kcal Electronic energy + Delta-G solvation = -30449.179680 eV Core-core repulsion = 25903.783328 eV Total energy + Delta-G solvation = -4545.396352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.71598 -49.65123 -41.14497 -40.35728 -39.07616 -36.79586 -34.89361 -33.26705 -32.45946 -31.41389 -30.50479 -28.44293 -26.74645 -25.72259 -25.02806 -24.21372 -23.60496 -21.74634 -20.37384 -19.23598 -18.78873 -18.74655 -18.23415 -17.56379 -17.19258 -16.55428 -16.53108 -16.44562 -15.98613 -15.87116 -15.77299 -15.00605 -14.88509 -14.70297 -14.32942 -14.18554 -13.97025 -13.89134 -13.81313 -13.34526 -13.22762 -13.04035 -12.69126 -12.43685 -11.80297 -11.50915 -11.23881 -11.05672 -10.83919 -10.60062 -10.50492 -10.47834 -10.14325 -9.95563 -9.62986 -9.23886 -9.13114 -8.91511 -8.69797 -7.16855 -6.31394 -3.22764 -0.06223 0.01440 1.94431 2.35364 2.67773 2.94134 3.32587 3.40375 3.45736 3.55970 3.62152 3.66530 3.71580 3.99347 4.26516 4.46378 4.59254 4.60132 4.70150 4.71505 4.74926 4.76869 4.94795 5.03322 5.06477 5.31019 5.45741 5.51018 5.58996 5.69829 5.73693 5.90780 6.05880 6.09374 6.13451 6.26492 6.42796 6.86968 6.90634 7.03085 7.40478 7.57994 8.22947 8.97035 9.48914 10.32123 11.21352 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.003325 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.421494 B = 8419.862950 C = 8826.753162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.024 4.024 3 Si 1.069 2.931 4 H -0.294 1.294 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.301 4.301 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.116 3.884 11 C 0.056 3.944 12 C 0.106 3.894 13 C 0.102 3.898 14 N -0.595 5.595 15 C 0.567 3.433 16 O -0.509 6.509 17 C -0.148 4.148 18 C 0.111 3.889 19 F -0.109 7.109 20 C 0.069 3.931 21 N -0.418 5.418 22 C 0.070 3.930 23 C 0.113 3.887 24 F -0.105 7.105 25 C 0.072 3.928 26 C 0.047 3.953 27 O -0.332 6.332 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.206 -10.605 -5.767 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.222 4.222 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.427 4.427 8 H 0.101 0.899 9 N -0.345 5.345 10 C -0.010 4.010 11 C 0.014 3.986 12 C -0.020 4.020 13 C -0.021 4.021 14 N -0.328 5.328 15 C 0.351 3.649 16 O -0.384 6.384 17 C -0.161 4.161 18 C 0.089 3.911 19 F -0.087 7.087 20 C -0.090 4.090 21 N -0.125 5.125 22 C -0.089 4.089 23 C 0.090 3.910 24 F -0.084 7.084 25 C -0.051 4.051 26 C -0.031 4.031 27 O -0.249 6.249 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.051 -9.374 -5.542 27.316 hybrid contribution -0.282 -1.178 0.523 1.319 sum 24.770 -10.552 -5.019 27.387 Atomic orbital electron populations 1.70922 1.05280 1.29368 1.52127 1.25734 0.96454 1.00937 0.99105 0.83728 0.73908 0.75972 0.76265 1.22120 1.21347 1.21776 1.20110 0.77663 0.95770 1.49139 0.89934 1.45779 1.01308 1.01167 1.86224 1.22643 0.86373 0.93715 0.98287 1.23117 0.91599 1.01772 0.82136 1.22815 0.87776 0.93844 0.97613 1.22315 0.90410 0.89182 1.00156 1.48126 1.46938 1.30667 1.07113 1.17636 0.79568 0.80994 0.86669 1.90863 1.62805 1.71841 1.12880 1.20621 0.95243 0.96233 1.04027 1.18625 0.89805 0.83521 0.99186 1.91618 1.82732 1.42234 1.92152 1.23051 1.01520 0.86963 0.97460 1.67675 1.10102 1.20423 1.14276 1.23079 0.89521 0.99641 0.96631 1.18675 0.81050 0.92846 0.98429 1.91656 1.33379 1.93956 1.89363 1.22525 0.99726 1.03246 0.79634 1.22905 0.89497 0.90840 0.99840 1.88014 1.74745 1.43708 1.18439 0.92950 0.91564 0.91868 0.93462 0.93467 0.89820 0.87314 0.79890 0.79794 0.89490 0.89913 0.87341 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.90 13.70 55.49 0.76 -29.14 16 2 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 3 Si 1.07 27.00 25.15 -169.99 -4.27 22.72 16 4 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.29 -6.63 6.18 56.52 0.35 -6.28 16 6 H -0.29 -6.98 6.53 56.52 0.37 -6.61 16 7 C -0.30 -8.87 11.08 -15.06 -0.17 -9.03 16 8 H 0.08 2.56 8.05 -52.48 -0.42 2.14 16 9 N -0.62 -15.57 3.70 -184.94 -0.68 -16.25 16 10 C 0.12 2.47 5.10 -8.34 -0.04 2.43 16 11 C 0.06 1.00 1.27 -90.96 -0.12 0.88 16 12 C 0.11 2.19 7.91 -8.21 -0.06 2.13 16 13 C 0.10 1.49 5.84 -3.68 -0.02 1.47 16 14 N -0.60 -7.82 3.03 -173.59 -0.53 -8.35 16 15 C 0.57 7.89 6.64 -12.33 -0.08 7.81 16 16 O -0.51 -8.84 16.60 5.33 0.09 -8.75 16 17 C -0.15 -1.58 3.73 -104.55 -0.39 -1.97 16 18 C 0.11 0.96 7.34 -38.80 -0.28 0.68 16 19 F -0.11 -1.04 16.92 2.25 0.04 -1.00 16 20 C 0.07 0.44 11.16 -17.51 -0.20 0.24 16 21 N -0.42 -3.00 10.33 -13.18 -0.14 -3.14 16 22 C 0.07 0.48 11.16 -17.51 -0.20 0.28 16 23 C 0.11 1.05 7.20 -38.80 -0.28 0.77 16 24 F -0.11 -1.18 16.91 2.25 0.04 -1.14 16 25 C 0.07 0.74 6.50 -3.58 -0.02 0.72 16 26 C 0.05 0.59 6.90 37.27 0.26 0.84 16 27 O -0.33 -5.82 10.53 -35.23 -0.37 -6.19 16 28 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 29 H 0.07 1.47 4.69 -51.93 -0.24 1.23 16 30 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 31 H 0.05 0.96 7.93 -51.93 -0.41 0.54 16 32 H 0.05 0.97 7.36 -51.93 -0.38 0.59 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 1.68 6.90 -51.93 -0.36 1.32 16 35 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.68 6.30 -51.93 -0.33 0.35 16 39 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -36.34 339.44 -5.92 -42.26 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.27 Total: -2.56 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.70 Total: 6.43 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.59 Total: -56.88 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.28 Total: -14.94 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.08 Total: -2.14 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.27 Total: 22.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.34 -5.92 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053276759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.148 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds