Wall clock time and date at job start Tue Mar 31 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48503 * 109.46598 * 5.37759 * 3 2 1 5 5 H 1.48495 * 109.47085 * 125.37205 * 3 2 1 6 6 H 1.48494 * 109.47362 * 245.37425 * 3 2 1 7 7 C 1.38812 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00017 * 5.33026 * 7 2 1 9 9 N 1.36930 * 120.00284 * 185.32852 * 7 2 1 10 10 C 1.47183 * 135.99916 * 353.91381 * 9 7 2 11 11 C 1.52651 * 87.94264 * 206.72076 * 10 9 7 12 12 C 1.47166 * 136.00334 * 174.27329 * 9 7 2 13 13 C 1.52786 * 114.14199 * 220.83420 * 11 10 9 14 14 N 1.47358 * 108.04347 * 178.99495 * 13 11 10 15 15 C 1.34781 * 121.06016 * 228.23063 * 14 13 11 16 16 O 1.21544 * 119.99933 * 359.97438 * 15 14 13 17 17 C 1.47849 * 119.99714 * 180.02562 * 15 14 13 18 18 C 1.40121 * 120.96109 * 89.71592 * 17 15 14 19 19 F 1.35100 * 120.52288 * 0.02562 * 18 17 15 20 20 C 1.38431 * 118.95814 * 179.77395 * 18 17 15 21 21 N 1.31772 * 120.93048 * 0.51478 * 20 18 17 22 22 C 1.31766 * 122.13857 * 359.73285 * 21 20 18 23 23 C 1.38434 * 120.93485 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.52591 * 179.97438 * 23 22 21 25 25 C 1.47137 * 117.87868 * 48.24850 * 14 13 11 26 26 C 1.53223 * 108.72646 * 307.70641 * 25 14 13 27 27 O 1.42353 * 114.14369 * 88.43791 * 11 10 9 28 28 H 0.97002 * 119.99753 * 174.98409 * 1 2 3 29 29 H 1.08993 * 113.48874 * 321.41908 * 10 9 7 30 30 H 1.08999 * 113.49290 * 91.93287 * 10 9 7 31 31 H 1.09000 * 113.49362 * 268.07738 * 12 9 7 32 32 H 1.09006 * 113.48512 * 38.51719 * 12 9 7 33 33 H 1.09004 * 109.74980 * 298.63155 * 13 11 10 34 34 H 1.09000 * 109.75112 * 59.30448 * 13 11 10 35 35 H 1.07998 * 119.53913 * 180.24990 * 20 18 17 36 36 H 1.07999 * 119.53922 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.59329 * 67.47497 * 25 14 13 38 38 H 1.08991 * 109.59640 * 187.93380 * 25 14 13 39 39 H 1.08996 * 109.49198 * 174.15950 * 26 25 14 40 40 H 1.08996 * 109.49249 * 294.20812 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2904 2.7434 0.1312 5 1 3.1996 1.6412 1.1416 6 1 3.0029 1.7548 -1.2727 7 6 2.0103 -1.2021 -0.0005 8 1 1.4738 -2.1354 -0.0878 9 7 3.3752 -1.2047 0.1096 10 6 4.4373 -0.1861 0.1345 11 6 5.3897 -1.2449 -0.4151 12 6 4.4241 -2.2275 0.2486 13 6 6.7815 -1.2207 0.2147 14 7 7.5756 -2.3040 -0.3914 15 6 8.2836 -3.1587 0.3733 16 8 8.2741 -3.0425 1.5831 17 6 9.0728 -4.2369 -0.2597 18 6 10.4064 -4.0286 -0.6356 19 9 10.9999 -2.8332 -0.4255 20 6 11.1081 -5.0686 -1.2209 21 7 10.5358 -6.2362 -1.4342 22 6 9.2833 -6.4742 -1.1014 23 6 8.5066 -5.4947 -0.5066 24 9 7.2231 -5.7475 -0.1692 25 6 7.5712 -2.4226 -1.8580 26 6 6.1186 -2.4612 -2.3440 27 8 5.4181 -1.3211 -1.8363 28 1 -0.4850 -0.8369 -0.0735 29 1 4.2634 0.6398 -0.5553 30 1 4.6939 0.1496 1.1392 31 1 4.6771 -2.4525 1.2847 32 1 4.2386 -3.1233 -0.3441 33 1 7.2581 -0.2603 0.0180 34 1 6.7020 -1.3787 1.2902 35 1 12.1378 -4.9196 -1.5106 36 1 8.8565 -7.4471 -1.2953 37 1 8.0804 -1.5640 -2.2957 38 1 8.0795 -3.3408 -2.1520 39 1 6.0991 -2.4445 -3.4337 40 1 5.6393 -3.3722 -1.9857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053276759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:08 Heat of formation + Delta-G solvation = -64.135037 kcal Electronic energy + Delta-G solvation = -30450.394828 eV Core-core repulsion = 25903.783328 eV Total energy + Delta-G solvation = -4546.611500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.40726 -50.36601 -42.22470 -41.27702 -40.22504 -38.20344 -36.08239 -34.69212 -33.94414 -31.98490 -31.88559 -29.75139 -28.25759 -27.39279 -25.96205 -24.82104 -24.74593 -23.37265 -21.62503 -20.57114 -19.69677 -19.49790 -19.41294 -19.09190 -18.23125 -17.77016 -17.38020 -17.21210 -17.13625 -16.73521 -16.69007 -16.32360 -16.16713 -15.72727 -15.59784 -15.35763 -15.16248 -15.06769 -14.87919 -14.75127 -14.40731 -14.34022 -13.55776 -13.48864 -13.37457 -12.98765 -12.83993 -12.41564 -12.31319 -12.10892 -11.82252 -11.49322 -11.31688 -11.19608 -11.09233 -10.96851 -10.82327 -10.20245 -9.88164 -9.27002 -8.70293 -5.52891 -0.74555 -0.55072 0.93520 1.37230 1.39168 1.48820 1.67123 2.10137 2.30099 2.41315 2.52373 2.70676 2.73358 2.81748 3.12870 3.14251 3.26844 3.38929 3.52883 3.64627 3.71954 3.86185 4.07194 4.14448 4.15970 4.21729 4.38069 4.42127 4.47710 4.48925 4.50225 4.57790 4.63839 4.74106 4.83107 4.96579 5.06757 5.19171 5.85634 5.87921 6.11672 6.35721 6.54466 6.63071 7.25228 8.16931 8.85124 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.003325 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.421494 B = 8419.862950 C = 8826.753162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.082 4.082 3 Si 1.107 2.893 4 H -0.301 1.301 5 H -0.253 1.253 6 H -0.271 1.271 7 C -0.293 4.293 8 H 0.046 0.954 9 N -0.650 5.650 10 C 0.106 3.894 11 C 0.085 3.915 12 C 0.103 3.897 13 C 0.108 3.892 14 N -0.597 5.597 15 C 0.564 3.436 16 O -0.554 6.554 17 C -0.163 4.163 18 C 0.106 3.894 19 F -0.115 7.115 20 C 0.092 3.908 21 N -0.423 5.423 22 C 0.090 3.910 23 C 0.096 3.904 24 F -0.123 7.123 25 C 0.076 3.924 26 C 0.041 3.959 27 O -0.357 6.357 28 H 0.245 0.755 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.219 0.781 36 H 0.213 0.787 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.420 -10.799 -7.185 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.274 4.274 3 Si 0.932 3.068 4 H -0.229 1.229 5 H -0.178 1.178 6 H -0.197 1.197 7 C -0.420 4.420 8 H 0.064 0.936 9 N -0.378 5.378 10 C -0.019 4.019 11 C 0.043 3.957 12 C -0.023 4.023 13 C -0.014 4.014 14 N -0.329 5.329 15 C 0.351 3.649 16 O -0.432 6.432 17 C -0.176 4.176 18 C 0.084 3.916 19 F -0.094 7.094 20 C -0.066 4.066 21 N -0.129 5.129 22 C -0.068 4.068 23 C 0.073 3.927 24 F -0.101 7.101 25 C -0.046 4.046 26 C -0.036 4.036 27 O -0.275 6.275 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.236 0.764 36 H 0.230 0.770 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.157 0.843 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 29.326 -9.618 -6.988 31.644 hybrid contribution -1.536 -1.315 0.900 2.213 sum 27.790 -10.933 -6.088 30.478 Atomic orbital electron populations 1.71031 1.06620 1.28529 1.55191 1.27162 0.96461 1.04665 0.99067 0.83310 0.73525 0.71595 0.78359 1.22939 1.17751 1.19747 1.19954 0.80239 0.94400 1.47403 0.93581 1.45841 1.00710 1.04515 1.86741 1.22889 0.85772 0.93737 0.99482 1.22609 0.92429 0.98023 0.82670 1.22990 0.87513 0.93672 0.98142 1.22123 0.88861 0.91095 0.99371 1.48217 1.46260 1.30051 1.08332 1.18110 0.79336 0.81232 0.86241 1.90832 1.64444 1.73061 1.14838 1.20507 0.95980 0.95731 1.05357 1.18737 0.89071 0.83945 0.99868 1.91605 1.82692 1.42753 1.92324 1.23590 1.02457 0.85619 0.94973 1.67836 1.10023 1.20610 1.14460 1.23493 0.89015 0.99874 0.94463 1.18876 0.80778 0.93104 0.99893 1.91614 1.34630 1.94063 1.89816 1.22682 0.98464 1.05631 0.77778 1.23218 0.90262 0.88603 1.01499 1.87966 1.76035 1.45735 1.17760 0.94561 0.91941 0.89910 0.92974 0.94208 0.87141 0.88242 0.76419 0.77024 0.87187 0.87418 0.84259 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.34 13.70 21.65 0.30 -64.04 16 2 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 3 Si 1.11 54.27 25.15 68.60 1.72 55.99 16 4 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 5 H -0.25 -10.88 6.18 99.48 0.61 -10.26 16 6 H -0.27 -12.33 6.53 99.48 0.65 -11.68 16 7 C -0.29 -17.87 11.08 84.03 0.93 -16.94 16 8 H 0.05 3.05 8.05 -2.91 -0.02 3.03 16 9 N -0.65 -33.05 3.70 -739.91 -2.74 -35.79 16 10 C 0.11 4.35 5.10 83.22 0.42 4.78 16 11 C 0.08 2.91 1.27 -11.01 -0.01 2.90 16 12 C 0.10 4.26 7.91 83.31 0.66 4.92 16 13 C 0.11 2.96 5.84 86.14 0.50 3.46 16 14 N -0.60 -14.45 3.03 -821.39 -2.49 -16.94 16 15 C 0.56 15.02 6.64 86.79 0.58 15.60 16 16 O -0.55 -19.15 16.60 -3.85 -0.06 -19.21 16 17 C -0.16 -3.16 3.73 -19.82 -0.07 -3.24 16 18 C 0.11 1.52 7.34 22.77 0.17 1.69 16 19 F -0.12 -1.89 16.92 44.97 0.76 -1.13 16 20 C 0.09 0.80 11.16 84.75 0.95 1.75 16 21 N -0.42 -4.41 10.33 -195.62 -2.02 -6.43 16 22 C 0.09 0.94 11.16 84.75 0.95 1.89 16 23 C 0.10 1.61 7.20 22.78 0.16 1.78 16 24 F -0.12 -2.67 16.91 44.97 0.76 -1.91 16 25 C 0.08 1.33 6.50 86.33 0.56 1.89 16 26 C 0.04 0.92 6.90 72.06 0.50 1.42 16 27 O -0.36 -11.86 10.53 -148.98 -1.57 -13.42 16 28 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 29 H 0.06 2.63 4.69 -2.39 -0.01 2.62 16 30 H 0.08 3.09 7.62 -2.39 -0.02 3.07 16 31 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 32 H 0.04 1.68 7.36 -2.38 -0.02 1.66 16 33 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.10 2.95 6.90 -2.39 -0.02 2.93 16 35 H 0.22 0.31 8.06 -2.91 -0.02 0.28 16 36 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.38 6.30 -2.39 -0.02 1.37 16 39 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.04 1.15 7.30 -2.39 -0.02 1.13 16 Total: -1.00 -83.32 339.44 2.34 -80.99 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.92 Total: 4.61 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.75 Total: 17.29 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.95 Total: -123.20 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.63 Total: -32.63 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 1.52 Total: -3.04 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 1.72 Total: 55.99 kcal Total: -83.32 2.34 -80.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053276759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.851 kcal (2) G-P(sol) polarization free energy of solvation -83.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds