Wall clock time and date at job start Tue Mar 31 2020 22:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47413 * 240.00070 * 3 2 1 5 5 H 1.48491 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46997 * 120.00336 * 3 2 1 7 7 C 1.38817 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.47675 * 134.45854 * 179.97438 * 9 7 2 11 11 C 1.53445 * 85.97891 * 155.73425 * 10 9 7 12 12 C 1.47675 * 134.45886 * 0.04371 * 9 7 2 13 13 C 1.52888 * 113.54803 * 137.64971 * 11 10 9 14 14 N 1.47333 * 108.06558 * 179.88253 * 13 11 10 15 15 C 1.34778 * 121.04911 * 131.59873 * 14 13 11 16 16 O 1.21553 * 119.99772 * 181.51428 * 15 14 13 17 17 C 1.47879 * 120.00433 * 1.51719 * 15 14 13 18 18 N 1.32841 * 119.71901 * 7.72674 * 17 15 14 19 19 C 1.31363 * 121.69252 * 180.02562 * 18 17 15 20 20 C 1.39003 * 120.92941 * 0.02562 * 19 18 17 21 21 F 1.35108 * 120.32952 * 179.97438 * 20 19 18 22 22 C 1.38715 * 119.34396 * 359.97438 * 20 19 18 23 23 C 1.38835 * 118.44830 * 359.73175 * 22 20 19 24 24 F 1.35103 * 120.48781 * 180.28352 * 23 22 20 25 25 C 1.47120 * 117.89785 * 311.62049 * 14 13 11 26 26 C 1.53227 * 108.71648 * 52.23661 * 25 14 13 27 27 O 1.42497 * 113.79587 * 268.75882 * 11 10 9 28 28 H 0.96996 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.09004 * 113.78746 * 41.46496 * 10 9 7 30 30 H 1.09005 * 113.89724 * 270.01312 * 10 9 7 31 31 H 1.08993 * 113.79446 * 89.99858 * 12 9 7 32 32 H 1.09003 * 113.78492 * 318.52744 * 12 9 7 33 33 H 1.09008 * 109.74360 * 60.23823 * 13 11 10 34 34 H 1.09003 * 109.74341 * 299.53076 * 13 11 10 35 35 H 1.08003 * 119.53986 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.77901 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.59836 * 292.46720 * 25 14 13 38 38 H 1.09003 * 109.59744 * 172.00336 * 25 14 13 39 39 H 1.09000 * 109.49624 * 65.81336 * 26 25 14 40 40 H 1.09003 * 109.49302 * 185.89964 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7212 -3.8108 -0.0015 11 6 0.3484 -4.0813 0.6285 12 6 -0.1044 -2.7567 -0.0009 13 6 -0.3595 -5.3058 0.0480 14 7 -1.6541 -5.4538 0.7356 15 6 -2.7927 -5.6450 0.0403 16 8 -3.8540 -5.7372 0.6256 17 6 -2.7508 -5.7427 -1.4347 18 7 -1.5790 -5.7961 -2.0582 19 6 -1.4966 -5.8827 -3.3663 20 6 -2.6418 -5.9216 -4.1533 21 9 -2.5429 -6.0102 -5.4978 22 6 -3.8871 -5.8684 -3.5446 23 6 -3.9433 -5.7833 -2.1600 24 9 -5.1343 -5.7349 -1.5240 25 6 -1.6647 -5.3857 2.2052 26 6 -0.9463 -4.1052 2.6434 27 8 0.3569 -4.0673 2.0534 28 1 -0.4850 0.8400 0.0004 29 1 2.5596 -4.0344 0.6582 30 1 1.8390 -4.2357 -0.9984 31 1 -0.5300 -2.8667 -0.9983 32 1 -0.7169 -2.1427 0.6594 33 1 0.2488 -6.1953 0.2127 34 1 -0.5239 -5.1641 -1.0202 35 1 -0.5255 -5.9244 -3.8371 36 1 -4.7919 -5.8973 -4.1336 37 1 -1.1477 -6.2534 2.6152 38 1 -2.6942 -5.3680 2.5630 39 1 -1.5187 -3.2370 2.3167 40 1 -0.8543 -4.0932 3.7294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053311216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:11 Heat of formation + Delta-G solvation = -51.876222 kcal Electronic energy + Delta-G solvation = -30449.155654 eV Core-core repulsion = 25903.075736 eV Total energy + Delta-G solvation = -4546.079918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.27507 -50.24926 -42.16632 -40.97633 -39.88200 -37.65273 -35.95295 -34.27208 -33.76120 -32.40520 -31.29928 -29.48542 -27.70992 -26.81678 -26.03371 -25.33520 -24.33249 -23.50490 -21.41502 -20.38474 -19.54598 -19.37094 -18.83969 -18.55904 -17.69009 -17.61352 -17.14621 -17.11801 -16.79615 -16.58898 -16.38182 -16.30008 -15.86037 -15.75052 -15.50740 -15.09987 -15.03038 -14.79374 -14.77881 -14.33367 -14.15843 -13.86663 -13.69868 -13.28373 -12.95711 -12.85427 -12.72189 -12.57365 -12.14354 -11.98778 -11.72770 -11.58435 -11.42581 -11.13074 -10.93767 -10.79972 -10.27928 -10.23959 -9.55690 -8.90129 -7.88835 -5.21975 -0.94215 -0.39887 1.33314 1.44655 1.48622 1.54371 1.62572 2.28085 2.39184 2.47793 2.67672 2.71523 2.75791 3.20329 3.31024 3.35472 3.40446 3.68608 3.75172 3.81407 3.94676 4.13251 4.22470 4.27263 4.36256 4.55489 4.57831 4.67503 4.76322 4.79381 4.84734 4.94041 4.98599 5.15806 5.18981 5.30219 5.48586 5.51338 5.91945 6.05557 6.20645 6.37996 6.82096 6.91063 7.61799 8.55471 9.27579 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.004110 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.974494 B = 6811.818514 C = 8014.532123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.228 4.228 8 H 0.087 0.913 9 N -0.634 5.634 10 C 0.139 3.861 11 C 0.066 3.934 12 C 0.154 3.846 13 C 0.063 3.937 14 N -0.588 5.588 15 C 0.565 3.435 16 O -0.559 6.559 17 C 0.019 3.981 18 N -0.403 5.403 19 C 0.075 3.925 20 C 0.119 3.881 21 F -0.107 7.107 22 C -0.139 4.139 23 C 0.130 3.870 24 F -0.111 7.111 25 C 0.082 3.918 26 C 0.049 3.951 27 O -0.366 6.366 28 H 0.245 0.755 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.020 0.980 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.169 0.831 35 H 0.221 0.779 36 H 0.198 0.802 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.026 0.974 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -17.723 -7.550 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.356 4.356 8 H 0.105 0.895 9 N -0.361 5.361 10 C 0.014 3.986 11 C 0.025 3.975 12 C 0.028 3.972 13 C -0.059 4.059 14 N -0.319 5.319 15 C 0.352 3.648 16 O -0.438 6.438 17 C -0.118 4.118 18 N -0.113 5.113 19 C -0.087 4.087 20 C 0.097 3.903 21 F -0.085 7.085 22 C -0.165 4.165 23 C 0.107 3.893 24 F -0.089 7.089 25 C -0.040 4.040 26 C -0.028 4.028 27 O -0.284 6.284 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.184 0.816 35 H 0.237 0.763 36 H 0.215 0.785 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.045 0.955 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.706 -17.413 -6.585 19.202 hybrid contribution -1.042 1.465 -0.499 1.866 sum -5.747 -15.948 -7.083 18.372 Atomic orbital electron populations 1.70027 1.06599 1.25398 1.58699 1.25617 0.96465 1.00912 1.03249 0.85149 0.77096 0.78718 0.78373 1.19863 1.22405 1.20393 1.19391 0.90895 0.83192 1.42109 0.89504 1.46132 1.03016 1.00702 1.86227 1.22734 0.93981 0.83477 0.98372 1.23482 0.98334 0.94015 0.81709 1.22498 0.87449 0.91471 0.95795 1.23836 0.81960 0.97184 1.02949 1.48079 1.07657 1.68614 1.07542 1.17878 0.83651 0.77309 0.85940 1.90806 1.29880 1.52805 1.70310 1.21226 0.89459 1.06495 0.94595 1.67561 1.23176 1.09859 1.10746 1.23888 1.00606 0.96164 0.88078 1.18661 0.93988 0.98862 0.78760 1.91632 1.96732 1.92534 1.27571 1.21917 1.00932 1.01616 0.92054 1.18368 0.81064 0.99200 0.90698 1.91625 1.42624 1.92602 1.82009 1.22414 1.03277 0.99284 0.79056 1.23003 0.84092 0.95801 0.99887 1.87866 1.27747 1.94394 1.18423 0.94599 0.92112 0.89684 0.96189 0.95318 0.88556 0.81605 0.76306 0.78451 0.87824 0.88192 0.95524 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.56 11.39 21.65 0.25 -59.31 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.23 -12.92 10.70 84.04 0.90 -12.02 16 8 H 0.09 4.66 7.83 -2.91 -0.02 4.63 16 9 N -0.63 -32.84 3.70 -729.11 -2.70 -35.54 16 10 C 0.14 5.40 8.33 86.30 0.72 6.12 16 11 C 0.07 2.51 1.21 -10.49 -0.01 2.50 16 12 C 0.15 7.51 6.65 86.31 0.57 8.08 16 13 C 0.06 1.85 5.31 86.18 0.46 2.31 16 14 N -0.59 -18.13 3.03 -821.22 -2.49 -20.62 16 15 C 0.56 18.36 7.69 86.80 0.67 19.03 16 16 O -0.56 -20.84 14.81 -3.88 -0.06 -20.89 16 17 C 0.02 0.50 6.65 41.88 0.28 0.78 16 18 N -0.40 -8.97 5.98 -184.61 -1.10 -10.08 16 19 C 0.07 1.14 11.17 84.95 0.95 2.09 16 20 C 0.12 1.70 7.35 22.57 0.17 1.87 16 21 F -0.11 -1.40 17.28 44.97 0.78 -0.63 16 22 C -0.14 -2.15 10.14 22.53 0.23 -1.92 16 23 C 0.13 3.05 7.30 22.75 0.17 3.22 16 24 F -0.11 -3.06 15.58 44.97 0.70 -2.36 16 25 C 0.08 2.29 6.60 86.34 0.57 2.86 16 26 C 0.05 1.62 6.88 72.06 0.50 2.12 16 27 O -0.37 -14.36 10.52 -148.98 -1.57 -15.92 16 28 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.09 2.75 8.09 -2.38 -0.02 2.73 16 31 H 0.02 1.00 7.94 -2.39 -0.02 0.98 16 32 H 0.03 1.65 6.31 -2.39 -0.02 1.63 16 33 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.17 4.69 3.68 -80.06 -0.29 4.39 16 35 H 0.22 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.10 2.80 7.05 -2.39 -0.02 2.79 16 39 H 0.03 1.04 7.20 -2.39 -0.02 1.03 16 40 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -77.72 339.76 3.28 -74.43 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.82 Total: 8.94 kcal Atomic # 6 Polarization: 26.79 SS G_CDS: 6.63 Total: 33.42 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -6.04 Total: -125.54 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.62 Total: -36.82 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 1.48 Total: -2.99 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.72 3.28 -74.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053311216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.557 kcal (2) G-P(sol) polarization free energy of solvation -77.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds