Wall clock time and date at job start Tue Mar 31 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48495 * 109.47051 * 355.35007 * 3 2 1 5 5 H 1.48493 * 109.47275 * 115.34944 * 3 2 1 6 6 H 1.48499 * 109.46664 * 235.35050 * 3 2 1 7 7 C 1.38806 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00456 * 352.34397 * 7 2 1 9 9 N 1.36944 * 119.99845 * 172.34846 * 7 2 1 10 10 C 1.47217 * 135.96690 * 6.42027 * 9 7 2 11 11 C 1.52949 * 87.66917 * 153.64428 * 10 9 7 12 12 C 1.47219 * 135.96417 * 186.79487 * 9 7 2 13 13 C 1.53317 * 115.76308 * 270.15804 * 11 10 9 14 14 C 1.55022 * 103.78623 * 229.61605 * 13 11 10 15 15 H 1.08997 * 110.87498 * 139.02147 * 14 13 11 16 16 N 1.46505 * 110.86863 * 262.70053 * 14 13 11 17 17 C 1.34783 * 119.99730 * 204.99990 * 16 14 13 18 18 O 1.21544 * 120.00042 * 359.97438 * 17 16 14 19 19 C 1.47844 * 119.99688 * 179.97438 * 17 16 14 20 20 C 1.40124 * 120.95965 * 89.71947 * 19 17 16 21 21 F 1.35096 * 120.51826 * 0.02562 * 20 19 17 22 22 C 1.38434 * 118.96031 * 179.77828 * 20 19 17 23 23 N 1.31770 * 120.92835 * 0.50953 * 22 20 19 24 24 C 1.31773 * 122.14007 * 359.73907 * 23 22 20 25 25 C 1.38428 * 120.93218 * 0.02562 * 24 23 22 26 26 F 1.35100 * 120.52382 * 179.97438 * 25 24 23 27 27 C 1.55063 * 102.13213 * 20.86044 * 14 13 11 28 28 O 1.42839 * 115.80257 * 141.75707 * 11 10 9 29 29 H 0.97009 * 119.99719 * 184.88946 * 1 2 3 30 30 H 1.09006 * 113.50299 * 268.32320 * 10 9 7 31 31 H 1.09006 * 113.49948 * 38.86572 * 10 9 7 32 32 H 1.08994 * 113.50265 * 321.13647 * 12 9 7 33 33 H 1.09004 * 113.49778 * 91.61887 * 12 9 7 34 34 H 1.09005 * 110.56134 * 348.19192 * 13 11 10 35 35 H 1.09000 * 110.56358 * 110.89001 * 13 11 10 36 36 H 0.96997 * 120.00135 * 25.00210 * 16 14 13 37 37 H 1.08000 * 119.53788 * 180.24859 * 22 20 19 38 38 H 1.07998 * 119.53300 * 180.02562 * 24 23 22 39 39 H 1.08996 * 110.58270 * 82.02904 * 27 14 13 40 40 H 1.09003 * 110.58322 * 204.78381 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2891 2.7441 -0.1135 5 1 3.0167 1.7468 1.2652 6 1 3.1869 1.6484 -1.1518 7 6 2.0102 -1.2021 0.0005 8 1 1.4775 -2.1332 0.1256 9 7 3.3705 -1.2074 -0.1574 10 6 4.4311 -0.1893 -0.2342 11 6 5.4009 -1.2500 0.2890 12 6 4.4118 -2.2335 -0.3313 13 6 5.5436 -1.3284 1.8135 14 6 7.0768 -1.3121 2.0423 15 1 7.3357 -0.6837 2.8945 16 7 7.5926 -2.6719 2.2190 17 6 8.7346 -2.8756 2.9054 18 8 9.3367 -1.9311 3.3772 19 6 9.2548 -4.2479 3.0842 20 6 10.1343 -4.8127 2.1509 21 9 10.5259 -4.1107 1.0651 22 6 10.5996 -6.0993 2.3616 23 7 10.2188 -6.7931 3.4152 24 6 9.3898 -6.3034 4.3148 25 6 8.8776 -5.0236 4.1885 26 9 8.0278 -4.5300 5.1155 27 6 7.5970 -0.6914 0.7200 28 8 6.7090 -1.2333 -0.2843 29 1 -0.4850 -0.8371 0.0716 30 1 4.6493 0.1352 -1.2517 31 1 4.2840 0.6442 0.4528 32 1 4.2485 -3.1254 0.2735 33 1 4.6240 -2.4647 -1.3752 34 1 5.0767 -0.4645 2.2867 35 1 5.1076 -2.2530 2.1919 36 1 7.1123 -3.4256 1.8421 37 1 11.2810 -6.5423 1.6504 38 1 9.1060 -6.9091 5.1627 39 1 7.5223 0.3955 0.7514 40 1 8.6258 -0.9984 0.5312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053815051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:12 Heat of formation + Delta-G solvation = -51.254450 kcal Electronic energy + Delta-G solvation = -29493.380645 eV Core-core repulsion = 24947.327690 eV Total energy + Delta-G solvation = -4546.052955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.72442 -49.69672 -41.01530 -40.43445 -39.35014 -36.82053 -34.71278 -33.29027 -32.40766 -31.42279 -30.62646 -28.55096 -25.94776 -25.85405 -25.52789 -24.23056 -22.38581 -21.56029 -21.03624 -19.24671 -18.99817 -18.78105 -18.56289 -17.56333 -17.23462 -16.65623 -16.54467 -16.44117 -16.00298 -15.95381 -15.32746 -15.29629 -14.87215 -14.60450 -14.53175 -14.33551 -14.00689 -13.82436 -13.58962 -13.20632 -13.05661 -12.78889 -12.41768 -11.84691 -11.63223 -11.57174 -11.45209 -11.12562 -10.93842 -10.68592 -10.53610 -10.41952 -10.25257 -10.04160 -9.63624 -9.44645 -9.28441 -8.93852 -8.84448 -7.24176 -6.39699 -3.31443 -0.07647 0.01109 1.87994 2.47041 2.68428 2.92182 3.31108 3.34874 3.40039 3.59976 3.62063 3.84147 3.93457 3.99695 4.26439 4.39626 4.53072 4.68408 4.73907 4.75693 4.79040 4.81948 4.94669 5.04766 5.22994 5.39750 5.50862 5.63251 5.72623 5.78063 5.95863 6.05379 6.13231 6.18469 6.23195 6.24424 6.44117 6.90176 6.95733 6.98035 7.20947 7.60293 8.15875 8.89508 9.41540 10.26200 11.13127 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.002869 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.325779 B = 9758.301299 C =10079.776358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.022 4.022 3 Si 1.069 2.931 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.305 4.305 8 H 0.085 0.915 9 N -0.619 5.619 10 C 0.090 3.910 11 C 0.054 3.946 12 C 0.134 3.866 13 C -0.119 4.119 14 C 0.106 3.894 15 H 0.112 0.888 16 N -0.695 5.695 17 C 0.567 3.433 18 O -0.513 6.513 19 C -0.155 4.155 20 C 0.116 3.884 21 F -0.108 7.108 22 C 0.069 3.931 23 N -0.417 5.417 24 C 0.069 3.931 25 C 0.115 3.885 26 F -0.108 7.108 27 C 0.038 3.962 28 O -0.356 6.356 29 H 0.262 0.738 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.408 0.592 37 H 0.185 0.815 38 H 0.185 0.815 39 H 0.075 0.925 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.642 -11.894 7.410 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.221 4.221 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.431 4.431 8 H 0.102 0.898 9 N -0.350 5.350 10 C -0.036 4.036 11 C 0.013 3.987 12 C 0.008 3.992 13 C -0.157 4.157 14 C 0.001 3.999 15 H 0.130 0.870 16 N -0.346 5.346 17 C 0.350 3.650 18 O -0.388 6.388 19 C -0.168 4.168 20 C 0.093 3.907 21 F -0.086 7.086 22 C -0.090 4.090 23 N -0.124 5.124 24 C -0.090 4.090 25 C 0.092 3.908 26 F -0.086 7.086 27 C -0.040 4.040 28 O -0.274 6.274 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.243 0.757 37 H 0.202 0.798 38 H 0.202 0.798 39 H 0.093 0.907 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.938 -10.409 7.601 26.311 hybrid contribution -0.537 -0.878 -0.173 1.044 sum 22.401 -11.287 7.428 26.161 Atomic orbital electron populations 1.70930 1.05309 1.29510 1.51551 1.25738 0.96417 1.00982 0.98979 0.83715 0.73895 0.76011 0.76250 1.22104 1.22171 1.21195 1.20080 0.78086 0.95899 1.49034 0.89773 1.45728 1.02034 1.01635 1.85561 1.23199 0.87356 0.93745 0.99264 1.23741 0.82481 1.00369 0.92108 1.22353 0.85859 0.92760 0.98276 1.22737 0.92702 1.05267 0.95033 1.22758 0.94289 0.82916 0.99902 0.86971 1.45912 1.24298 1.10235 1.54161 1.17632 0.81445 0.86933 0.78996 1.90860 1.57691 1.41868 1.48364 1.20618 1.02287 0.97081 0.96781 1.18629 0.95979 0.91444 0.84607 1.91633 1.88490 1.78038 1.50411 1.23071 0.99945 0.89270 0.96702 1.67672 1.09163 1.34619 1.00942 1.23068 0.94717 0.91587 0.99624 1.18633 0.91866 0.93103 0.87155 1.91632 1.66903 1.87521 1.62578 1.23955 0.95036 0.98402 0.86575 1.88794 1.17403 1.83646 1.37543 0.92822 0.92801 0.92908 0.93301 0.93482 0.88300 0.89151 0.75697 0.79842 0.79849 0.90720 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.70 55.49 0.76 -28.24 16 2 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 3 Si 1.07 26.40 25.13 -169.99 -4.27 22.13 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -6.74 6.63 56.52 0.37 -6.36 16 6 H -0.29 -6.64 6.11 56.52 0.35 -6.30 16 7 C -0.31 -8.58 11.08 -15.06 -0.17 -8.75 16 8 H 0.08 2.48 8.05 -52.49 -0.42 2.06 16 9 N -0.62 -14.82 3.66 -184.62 -0.68 -15.49 16 10 C 0.09 1.89 5.22 -7.89 -0.04 1.85 16 11 C 0.05 0.92 1.66 -90.66 -0.15 0.77 16 12 C 0.13 2.59 8.20 -8.04 -0.07 2.52 16 13 C -0.12 -1.72 6.11 -25.50 -0.16 -1.87 16 14 C 0.11 1.31 3.51 -65.77 -0.23 1.08 16 15 H 0.11 1.38 7.55 -51.93 -0.39 0.99 16 16 N -0.70 -7.86 5.15 -52.66 -0.27 -8.13 16 17 C 0.57 6.93 6.74 -12.33 -0.08 6.85 16 18 O -0.51 -7.89 16.75 5.33 0.09 -7.80 16 19 C -0.15 -1.52 5.68 -104.55 -0.59 -2.11 16 20 C 0.12 0.98 7.34 -38.80 -0.28 0.69 16 21 F -0.11 -1.03 16.91 2.25 0.04 -0.99 16 22 C 0.07 0.44 11.16 -17.51 -0.20 0.25 16 23 N -0.42 -2.97 10.33 -13.18 -0.14 -3.11 16 24 C 0.07 0.44 11.16 -17.51 -0.20 0.25 16 25 C 0.12 0.97 7.34 -38.80 -0.28 0.69 16 26 F -0.11 -1.04 16.92 2.25 0.04 -1.00 16 27 C 0.04 0.50 7.42 38.25 0.28 0.78 16 28 O -0.36 -5.66 11.32 -35.23 -0.40 -6.06 16 29 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 30 H 0.05 1.16 7.69 -51.93 -0.40 0.76 16 31 H 0.05 1.12 4.50 -51.93 -0.23 0.89 16 32 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.48 7.82 -51.93 -0.41 1.08 16 35 H 0.09 1.25 7.70 -51.93 -0.40 0.85 16 36 H 0.41 4.02 8.62 -40.82 -0.35 3.67 16 37 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -34.13 346.93 -6.22 -40.35 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.36 Total: 0.87 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.26 Total: 2.26 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.32 Total: -54.98 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.31 Total: -13.86 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.08 Total: -1.99 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.27 Total: 22.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.13 -6.22 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053815051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.900 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds