Wall clock time and date at job start Tue Mar 31 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48495 * 109.47051 * 355.35007 * 3 2 1 5 5 H 1.48493 * 109.47275 * 115.34944 * 3 2 1 6 6 H 1.48499 * 109.46664 * 235.35050 * 3 2 1 7 7 C 1.38806 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00456 * 352.34397 * 7 2 1 9 9 N 1.36944 * 119.99845 * 172.34846 * 7 2 1 10 10 C 1.47217 * 135.96690 * 6.42027 * 9 7 2 11 11 C 1.52949 * 87.66917 * 153.64428 * 10 9 7 12 12 C 1.47219 * 135.96417 * 186.79487 * 9 7 2 13 13 C 1.53317 * 115.76308 * 270.15804 * 11 10 9 14 14 C 1.55022 * 103.78623 * 229.61605 * 13 11 10 15 15 H 1.08997 * 110.87498 * 139.02147 * 14 13 11 16 16 N 1.46505 * 110.86863 * 262.70053 * 14 13 11 17 17 C 1.34783 * 119.99730 * 204.99990 * 16 14 13 18 18 O 1.21544 * 120.00042 * 359.97438 * 17 16 14 19 19 C 1.47844 * 119.99688 * 179.97438 * 17 16 14 20 20 C 1.40124 * 120.95965 * 89.71947 * 19 17 16 21 21 F 1.35096 * 120.51826 * 0.02562 * 20 19 17 22 22 C 1.38434 * 118.96031 * 179.77828 * 20 19 17 23 23 N 1.31770 * 120.92835 * 0.50953 * 22 20 19 24 24 C 1.31773 * 122.14007 * 359.73907 * 23 22 20 25 25 C 1.38428 * 120.93218 * 0.02562 * 24 23 22 26 26 F 1.35100 * 120.52382 * 179.97438 * 25 24 23 27 27 C 1.55063 * 102.13213 * 20.86044 * 14 13 11 28 28 O 1.42839 * 115.80257 * 141.75707 * 11 10 9 29 29 H 0.97009 * 119.99719 * 184.88946 * 1 2 3 30 30 H 1.09006 * 113.50299 * 268.32320 * 10 9 7 31 31 H 1.09006 * 113.49948 * 38.86572 * 10 9 7 32 32 H 1.08994 * 113.50265 * 321.13647 * 12 9 7 33 33 H 1.09004 * 113.49778 * 91.61887 * 12 9 7 34 34 H 1.09005 * 110.56134 * 348.19192 * 13 11 10 35 35 H 1.09000 * 110.56358 * 110.89001 * 13 11 10 36 36 H 0.96997 * 120.00135 * 25.00210 * 16 14 13 37 37 H 1.08000 * 119.53788 * 180.24859 * 22 20 19 38 38 H 1.07998 * 119.53300 * 180.02562 * 24 23 22 39 39 H 1.08996 * 110.58270 * 82.02904 * 27 14 13 40 40 H 1.09003 * 110.58322 * 204.78381 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2891 2.7441 -0.1135 5 1 3.0167 1.7468 1.2652 6 1 3.1869 1.6484 -1.1518 7 6 2.0102 -1.2021 0.0005 8 1 1.4775 -2.1332 0.1256 9 7 3.3705 -1.2074 -0.1574 10 6 4.4311 -0.1893 -0.2342 11 6 5.4009 -1.2500 0.2890 12 6 4.4118 -2.2335 -0.3313 13 6 5.5436 -1.3284 1.8135 14 6 7.0768 -1.3121 2.0423 15 1 7.3357 -0.6837 2.8945 16 7 7.5926 -2.6719 2.2190 17 6 8.7346 -2.8756 2.9054 18 8 9.3367 -1.9311 3.3772 19 6 9.2548 -4.2479 3.0842 20 6 10.1343 -4.8127 2.1509 21 9 10.5259 -4.1107 1.0651 22 6 10.5996 -6.0993 2.3616 23 7 10.2188 -6.7931 3.4152 24 6 9.3898 -6.3034 4.3148 25 6 8.8776 -5.0236 4.1885 26 9 8.0278 -4.5300 5.1155 27 6 7.5970 -0.6914 0.7200 28 8 6.7090 -1.2333 -0.2843 29 1 -0.4850 -0.8371 0.0716 30 1 4.6493 0.1352 -1.2517 31 1 4.2840 0.6442 0.4528 32 1 4.2485 -3.1254 0.2735 33 1 4.6240 -2.4647 -1.3752 34 1 5.0767 -0.4645 2.2867 35 1 5.1076 -2.2530 2.1919 36 1 7.1123 -3.4256 1.8421 37 1 11.2810 -6.5423 1.6504 38 1 9.1060 -6.9091 5.1627 39 1 7.5223 0.3955 0.7514 40 1 8.6258 -0.9984 0.5312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053815051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:12 Heat of formation + Delta-G solvation = -77.418516 kcal Electronic energy + Delta-G solvation = -29494.515204 eV Core-core repulsion = 24947.327690 eV Total energy + Delta-G solvation = -4547.187515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.38487 -50.35547 -42.05192 -41.34993 -40.34934 -38.27174 -35.80049 -34.53714 -33.99955 -31.96805 -31.74030 -30.19653 -27.43588 -27.23430 -26.53563 -24.80839 -23.51312 -23.16129 -22.01105 -20.82556 -19.76290 -19.54398 -19.39905 -19.25725 -18.23730 -17.58694 -17.45046 -17.18433 -17.04484 -16.66905 -16.61162 -16.39300 -16.21233 -15.86751 -15.55765 -15.24755 -15.11732 -14.87407 -14.83147 -14.40598 -14.36075 -13.94434 -13.46077 -13.35862 -13.03363 -12.87622 -12.78889 -12.45586 -12.35700 -12.10992 -11.84436 -11.67032 -11.37661 -11.19849 -11.03821 -11.00623 -10.65867 -10.20283 -10.18174 -9.26187 -8.68342 -5.51502 -0.71773 -0.53084 0.96926 1.36863 1.46367 1.62378 1.65371 2.12671 2.31024 2.51276 2.60601 2.72613 2.94380 3.03630 3.17382 3.19214 3.36475 3.37729 3.44419 3.49098 3.69682 3.82006 4.15683 4.18602 4.24088 4.40458 4.51426 4.57512 4.58478 4.59359 4.62872 4.68711 4.73197 4.83734 4.90149 5.10625 5.13489 5.20473 5.88064 5.91559 6.06804 6.37200 6.65602 6.69332 7.27632 8.20506 8.87539 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.002869 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.325779 B = 9758.301299 C =10079.776358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.080 4.080 3 Si 1.103 2.897 4 H -0.305 1.305 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.289 4.289 8 H 0.057 0.943 9 N -0.647 5.647 10 C 0.079 3.921 11 C 0.081 3.919 12 C 0.130 3.870 13 C -0.116 4.116 14 C 0.116 3.884 15 H 0.118 0.882 16 N -0.690 5.690 17 C 0.568 3.432 18 O -0.549 6.549 19 C -0.169 4.169 20 C 0.105 3.895 21 F -0.117 7.117 22 C 0.086 3.914 23 N -0.425 5.425 24 C 0.085 3.915 25 C 0.104 3.896 26 F -0.118 7.118 27 C 0.036 3.964 28 O -0.362 6.362 29 H 0.248 0.752 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.415 0.585 37 H 0.215 0.785 38 H 0.214 0.786 39 H 0.089 0.911 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.526 -12.874 8.014 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.273 4.273 3 Si 0.929 3.071 4 H -0.233 1.233 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.416 4.416 8 H 0.075 0.925 9 N -0.377 5.377 10 C -0.046 4.046 11 C 0.040 3.960 12 C 0.005 3.995 13 C -0.154 4.154 14 C 0.011 3.989 15 H 0.136 0.864 16 N -0.340 5.340 17 C 0.353 3.647 18 O -0.427 6.427 19 C -0.181 4.181 20 C 0.083 3.917 21 F -0.095 7.095 22 C -0.072 4.072 23 N -0.132 5.132 24 C -0.073 4.073 25 C 0.081 3.919 26 F -0.096 7.096 27 C -0.041 4.041 28 O -0.280 6.280 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.252 0.748 37 H 0.232 0.768 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 25.872 -11.445 8.196 29.454 hybrid contribution -1.352 -0.731 -0.394 1.587 sum 24.520 -12.177 7.802 28.467 Atomic orbital electron populations 1.71029 1.06652 1.28780 1.54942 1.26984 0.96434 1.04451 0.99395 0.83331 0.73355 0.72129 0.78259 1.23319 1.19153 1.19088 1.19946 0.80403 0.94667 1.46558 0.92530 1.45732 1.01417 1.04686 1.85866 1.23381 0.87487 0.94342 0.99372 1.23230 0.82491 0.96993 0.93319 1.22521 0.84993 0.93102 0.98917 1.22693 0.94159 1.05607 0.92910 1.22608 0.92796 0.83587 0.99889 0.86432 1.45872 1.24176 1.10143 1.53818 1.17949 0.81067 0.87609 0.78085 1.90835 1.58722 1.43307 1.49832 1.20563 1.03353 0.96130 0.98067 1.18765 0.96405 0.92150 0.84397 1.91608 1.88660 1.78407 1.50854 1.23539 0.98997 0.88133 0.96572 1.67812 1.09480 1.34628 1.01286 1.23527 0.93164 0.90736 0.99851 1.18773 0.92464 0.93783 0.86849 1.91607 1.67349 1.87781 1.62912 1.24150 0.94804 0.99257 0.85938 1.88787 1.16865 1.83789 1.38542 0.94263 0.93159 0.92679 0.91676 0.93262 0.88509 0.88461 0.74779 0.76847 0.76914 0.89317 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.13 13.70 21.65 0.30 -61.84 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 3 Si 1.10 52.84 25.13 68.60 1.72 54.56 16 4 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 5 H -0.27 -11.36 6.63 99.48 0.66 -10.70 16 6 H -0.27 -11.72 6.11 99.48 0.61 -11.11 16 7 C -0.29 -16.43 11.08 84.03 0.93 -15.50 16 8 H 0.06 3.45 8.05 -2.91 -0.02 3.43 16 9 N -0.65 -30.40 3.66 -739.12 -2.70 -33.10 16 10 C 0.08 3.17 5.22 83.50 0.44 3.61 16 11 C 0.08 2.58 1.66 -10.82 -0.02 2.56 16 12 C 0.13 4.81 8.20 83.40 0.68 5.49 16 13 C -0.12 -3.05 6.11 31.39 0.19 -2.86 16 14 C 0.12 2.61 3.51 46.39 0.16 2.77 16 15 H 0.12 2.62 7.55 -2.39 -0.02 2.60 16 16 N -0.69 -14.27 5.15 -438.79 -2.26 -16.53 16 17 C 0.57 13.15 6.74 86.79 0.58 13.73 16 18 O -0.55 -16.40 16.75 -3.85 -0.06 -16.46 16 19 C -0.17 -3.05 5.68 -19.82 -0.11 -3.16 16 20 C 0.11 1.58 7.34 22.77 0.17 1.74 16 21 F -0.12 -2.05 16.91 44.97 0.76 -1.29 16 22 C 0.09 0.86 11.16 84.75 0.95 1.80 16 23 N -0.43 -4.76 10.33 -195.62 -2.02 -6.78 16 24 C 0.09 0.87 11.16 84.75 0.95 1.81 16 25 C 0.10 1.57 7.34 22.77 0.17 1.74 16 26 F -0.12 -2.12 16.92 44.97 0.76 -1.35 16 27 C 0.04 0.83 7.42 72.69 0.54 1.37 16 28 O -0.36 -10.54 11.32 -148.98 -1.69 -12.23 16 29 H 0.25 15.91 8.73 -92.70 -0.81 15.10 16 30 H 0.05 2.07 7.69 -2.38 -0.02 2.05 16 31 H 0.06 2.19 4.50 -2.38 -0.01 2.18 16 32 H 0.07 2.19 7.91 -2.39 -0.02 2.17 16 33 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.10 2.66 7.82 -2.38 -0.02 2.65 16 35 H 0.10 2.46 7.70 -2.39 -0.02 2.44 16 36 H 0.42 7.33 8.62 -92.71 -0.80 6.53 16 37 H 0.22 0.71 8.06 -2.91 -0.02 0.68 16 38 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.00 346.93 1.04 -73.96 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.14 Total: 10.25 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.09 Total: 10.82 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -6.68 Total: -118.25 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.75 Total: -28.69 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 1.52 Total: -2.65 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 1.72 Total: 54.56 kcal Total: -75.00 1.04 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053815051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.456 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds