Wall clock time and date at job start Tue Mar 31 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00349 * 2 1 4 4 H 1.48500 * 109.47586 * 269.72884 * 3 2 1 5 5 H 1.48503 * 109.47131 * 29.72904 * 3 2 1 6 6 H 1.48500 * 109.47018 * 149.72850 * 3 2 1 7 7 C 1.38819 * 119.99775 * 179.73324 * 2 1 3 8 8 H 1.07994 * 119.99797 * 337.58787 * 7 2 1 9 9 N 1.36931 * 120.00104 * 157.58586 * 7 2 1 10 10 C 1.47222 * 135.96913 * 350.24408 * 9 7 2 11 11 C 1.52911 * 87.68893 * 153.66536 * 10 9 7 12 12 C 1.47222 * 135.96953 * 170.60617 * 9 7 2 13 13 C 1.53323 * 115.72895 * 270.12684 * 11 10 9 14 14 C 1.55030 * 103.78339 * 229.63511 * 13 11 10 15 15 H 1.08998 * 110.86711 * 262.48286 * 14 13 11 16 16 N 1.46503 * 110.87292 * 139.01372 * 14 13 11 17 17 C 1.34769 * 120.00142 * 154.99835 * 16 14 13 18 18 O 1.21547 * 120.00114 * 359.97438 * 17 16 14 19 19 C 1.47848 * 119.99927 * 180.02562 * 17 16 14 20 20 C 1.40124 * 120.96256 * 89.71844 * 19 17 16 21 21 F 1.35101 * 120.51896 * 0.02562 * 20 19 17 22 22 C 1.38426 * 118.95876 * 179.77916 * 20 19 17 23 23 N 1.31765 * 120.93234 * 0.50478 * 22 20 19 24 24 C 1.31770 * 122.14155 * 359.74660 * 23 22 20 25 25 C 1.38432 * 120.93046 * 359.97438 * 24 23 22 26 26 F 1.35092 * 120.52435 * 180.02562 * 25 24 23 27 27 C 1.55055 * 102.13297 * 20.85120 * 14 13 11 28 28 O 1.42829 * 115.81868 * 141.74004 * 11 10 9 29 29 H 0.96995 * 120.00277 * 183.88180 * 1 2 3 30 30 H 1.08998 * 113.49736 * 268.34897 * 10 9 7 31 31 H 1.08998 * 113.50046 * 38.88926 * 10 9 7 32 32 H 1.09003 * 113.50105 * 321.11135 * 12 9 7 33 33 H 1.08999 * 113.50122 * 91.58401 * 12 9 7 34 34 H 1.09000 * 110.56422 * 348.20484 * 13 11 10 35 35 H 1.08995 * 110.56871 * 110.90972 * 13 11 10 36 36 H 0.97003 * 119.99373 * 334.99998 * 16 14 13 37 37 H 1.08001 * 119.53493 * 180.27704 * 22 20 19 38 38 H 1.07992 * 119.53680 * 179.97438 * 24 23 22 39 39 H 1.08995 * 110.58706 * 82.03175 * 27 14 13 40 40 H 1.09002 * 110.58784 * 204.78679 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.5035 2.0431 -1.4000 5 1 1.4449 2.6543 0.6943 6 1 3.5449 1.4416 0.7058 7 6 2.0102 -1.2022 0.0056 8 1 1.5313 -2.1004 0.3664 9 7 3.3019 -1.2492 -0.4463 10 6 4.2102 -0.3308 -1.1527 11 6 5.3736 -1.0776 -0.4993 12 6 4.3885 -2.2425 -0.4444 13 6 5.8334 -0.5355 0.8592 14 6 7.3703 -0.4046 0.7036 15 1 7.8787 -1.2705 1.1275 16 7 7.8536 0.8341 1.3187 17 6 9.1286 0.9213 1.7464 18 8 9.8776 -0.0280 1.6223 19 6 9.6161 2.1712 2.3677 20 6 9.5140 2.3767 3.7500 21 9 8.9659 1.4321 4.5454 22 6 9.9880 3.5606 4.2885 23 7 10.5194 4.4894 3.5197 24 6 10.6307 4.3405 2.2151 25 6 10.1888 3.1869 1.5904 26 9 10.3075 3.0426 0.2525 27 6 7.5392 -0.3587 -0.8371 28 8 6.5269 -1.2720 -1.3191 29 1 -0.4850 -0.8381 0.0569 30 1 4.1794 -0.4376 -2.2370 31 1 4.1197 0.7056 -0.8275 32 1 4.4485 -2.8193 0.4786 33 1 4.4056 -2.8699 -1.3356 34 1 5.3842 0.4381 1.0549 35 1 5.5854 -1.2373 1.6554 36 1 7.2558 1.5915 1.4181 37 1 9.9180 3.7268 5.3533 38 1 11.0729 5.1294 1.6250 39 1 7.3571 0.6481 -1.2128 40 1 8.5340 -0.6994 -1.1240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053815052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:15 Heat of formation + Delta-G solvation = -49.688592 kcal Electronic energy + Delta-G solvation = -29461.549305 eV Core-core repulsion = 24915.564250 eV Total energy + Delta-G solvation = -4545.985055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.74519 -49.71338 -41.00038 -40.40968 -39.40845 -36.77595 -34.91332 -33.31818 -32.42070 -31.43766 -30.52285 -28.49939 -25.98274 -25.72950 -25.50084 -24.24685 -22.39146 -21.57929 -21.14816 -19.21145 -19.04044 -18.79437 -18.59597 -17.53207 -17.20231 -16.60100 -16.55950 -16.40466 -16.02170 -15.80201 -15.46621 -15.26793 -14.96240 -14.84787 -14.35493 -14.31423 -13.84296 -13.82447 -13.58538 -13.45476 -13.01837 -12.83382 -12.67259 -11.90727 -11.73225 -11.51950 -11.21887 -11.08419 -10.86811 -10.78970 -10.61160 -10.56880 -10.28183 -9.90550 -9.65051 -9.47511 -9.35178 -8.94067 -8.69251 -7.27321 -6.44379 -3.29686 -0.09522 -0.00309 1.85119 2.42128 2.66587 2.90275 3.28830 3.29509 3.34792 3.53508 3.60611 3.79024 3.95095 4.02078 4.24704 4.45472 4.49675 4.68588 4.72010 4.72516 4.79605 4.82626 5.03163 5.04117 5.07799 5.38955 5.62513 5.64854 5.71211 5.75057 6.00618 6.04391 6.12465 6.22663 6.27173 6.29661 6.47220 6.89035 6.91281 7.02713 7.21345 7.56783 8.17390 8.88049 9.42692 10.29681 11.07045 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003248 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.341979 B = 8619.501754 C = 9306.170118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.018 4.018 3 Si 1.064 2.936 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.312 4.312 8 H 0.081 0.919 9 N -0.615 5.615 10 C 0.094 3.906 11 C 0.058 3.942 12 C 0.132 3.868 13 C -0.123 4.123 14 C 0.108 3.892 15 H 0.112 0.888 16 N -0.700 5.700 17 C 0.568 3.432 18 O -0.509 6.509 19 C -0.156 4.156 20 C 0.116 3.884 21 F -0.108 7.108 22 C 0.070 3.930 23 N -0.417 5.417 24 C 0.069 3.931 25 C 0.115 3.885 26 F -0.108 7.108 27 C 0.039 3.961 28 O -0.353 6.353 29 H 0.264 0.736 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.407 0.593 37 H 0.185 0.815 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.080 8.816 6.468 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.897 3.103 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.437 4.437 8 H 0.099 0.901 9 N -0.346 5.346 10 C -0.032 4.032 11 C 0.017 3.983 12 C 0.006 3.994 13 C -0.161 4.161 14 C 0.004 3.996 15 H 0.130 0.870 16 N -0.352 5.352 17 C 0.351 3.649 18 O -0.383 6.383 19 C -0.169 4.169 20 C 0.093 3.907 21 F -0.086 7.086 22 C -0.089 4.089 23 N -0.124 5.124 24 C -0.089 4.089 25 C 0.092 3.908 26 F -0.086 7.086 27 C -0.039 4.039 28 O -0.269 6.269 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.243 0.757 37 H 0.202 0.798 38 H 0.202 0.798 39 H 0.082 0.918 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.437 10.303 6.597 26.438 hybrid contribution -0.562 -2.162 -0.356 2.262 sum 22.875 8.142 6.241 25.070 Atomic orbital electron populations 1.70910 1.05623 1.29827 1.49673 1.25723 0.96237 1.00816 0.99069 0.83767 0.73999 0.76027 0.76476 1.21998 1.22207 1.21547 1.19942 0.84841 0.96812 1.42142 0.90128 1.45584 1.10747 1.13286 1.64942 1.23086 0.87809 0.95427 0.96841 1.23613 0.85233 0.99999 0.89451 1.22432 0.84957 0.92281 0.99736 1.22719 0.91764 1.03889 0.97722 1.22848 0.95635 0.87121 0.94039 0.86978 1.45923 1.11342 1.17312 1.60655 1.17634 0.82714 0.86188 0.78394 1.90870 1.55318 1.37159 1.54969 1.20612 1.05352 0.97151 0.93745 1.18637 0.96883 0.88612 0.86560 1.91637 1.82248 1.62529 1.72161 1.23078 0.96164 0.87689 1.01970 1.67672 1.10894 1.28959 1.04830 1.23073 0.98864 0.95839 0.91165 1.18625 0.99111 0.94371 0.78647 1.91626 1.93148 1.95666 1.28195 1.23875 0.93344 0.94839 0.91824 1.88819 1.23039 1.59468 1.55619 0.92553 0.93087 0.93482 0.92987 0.93179 0.89212 0.88828 0.75738 0.79798 0.79818 0.91813 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.35 13.70 55.49 0.76 -27.59 16 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 3 Si 1.06 25.63 25.33 -169.99 -4.31 21.33 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.15 5.50 56.52 0.31 -5.84 16 7 C -0.31 -8.78 10.96 -15.06 -0.17 -8.95 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.62 -14.92 3.53 -184.65 -0.65 -15.57 16 10 C 0.09 2.00 6.68 -7.92 -0.05 1.94 16 11 C 0.06 1.04 1.66 -90.68 -0.15 0.89 16 12 C 0.13 2.65 8.20 -8.05 -0.07 2.58 16 13 C -0.12 -1.87 6.20 -25.49 -0.16 -2.03 16 14 C 0.11 1.40 3.51 -65.77 -0.23 1.17 16 15 H 0.11 1.52 7.54 -51.93 -0.39 1.13 16 16 N -0.70 -7.91 5.19 -52.66 -0.27 -8.18 16 17 C 0.57 6.94 6.74 -12.33 -0.08 6.85 16 18 O -0.51 -7.89 16.75 5.32 0.09 -7.81 16 19 C -0.16 -1.51 5.68 -104.55 -0.59 -2.11 16 20 C 0.12 0.98 7.34 -38.80 -0.28 0.69 16 21 F -0.11 -1.04 16.92 2.25 0.04 -1.00 16 22 C 0.07 0.45 11.16 -17.51 -0.20 0.25 16 23 N -0.42 -2.95 10.32 -13.19 -0.14 -3.08 16 24 C 0.07 0.44 11.16 -17.51 -0.20 0.24 16 25 C 0.12 0.95 7.34 -38.80 -0.28 0.66 16 26 F -0.11 -0.99 16.91 2.25 0.04 -0.96 16 27 C 0.04 0.53 7.42 38.24 0.28 0.82 16 28 O -0.35 -5.88 11.32 -35.23 -0.40 -6.28 16 29 H 0.26 8.05 8.73 -40.82 -0.36 7.70 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.00 3.52 -51.93 -0.18 0.82 16 32 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.40 6.41 -51.93 -0.33 1.06 16 35 H 0.09 1.40 7.81 -51.93 -0.41 1.00 16 36 H 0.41 3.84 8.40 -40.82 -0.34 3.50 16 37 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -33.85 346.30 -6.16 -40.02 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.27 Total: 1.50 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.27 Total: 2.41 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.30 Total: -54.43 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.31 Total: -14.09 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.08 Total: -1.96 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.31 Total: 21.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.85 -6.16 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053815052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.671 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds