Wall clock time and date at job start Tue Mar 31 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00349 * 2 1 4 4 H 1.48500 * 109.47586 * 269.72884 * 3 2 1 5 5 H 1.48503 * 109.47131 * 29.72904 * 3 2 1 6 6 H 1.48500 * 109.47018 * 149.72850 * 3 2 1 7 7 C 1.38819 * 119.99775 * 179.73324 * 2 1 3 8 8 H 1.07994 * 119.99797 * 337.58787 * 7 2 1 9 9 N 1.36931 * 120.00104 * 157.58586 * 7 2 1 10 10 C 1.47222 * 135.96913 * 350.24408 * 9 7 2 11 11 C 1.52911 * 87.68893 * 153.66536 * 10 9 7 12 12 C 1.47222 * 135.96953 * 170.60617 * 9 7 2 13 13 C 1.53323 * 115.72895 * 270.12684 * 11 10 9 14 14 C 1.55030 * 103.78339 * 229.63511 * 13 11 10 15 15 H 1.08998 * 110.86711 * 262.48286 * 14 13 11 16 16 N 1.46503 * 110.87292 * 139.01372 * 14 13 11 17 17 C 1.34769 * 120.00142 * 154.99835 * 16 14 13 18 18 O 1.21547 * 120.00114 * 359.97438 * 17 16 14 19 19 C 1.47848 * 119.99927 * 180.02562 * 17 16 14 20 20 C 1.40124 * 120.96256 * 89.71844 * 19 17 16 21 21 F 1.35101 * 120.51896 * 0.02562 * 20 19 17 22 22 C 1.38426 * 118.95876 * 179.77916 * 20 19 17 23 23 N 1.31765 * 120.93234 * 0.50478 * 22 20 19 24 24 C 1.31770 * 122.14155 * 359.74660 * 23 22 20 25 25 C 1.38432 * 120.93046 * 359.97438 * 24 23 22 26 26 F 1.35092 * 120.52435 * 180.02562 * 25 24 23 27 27 C 1.55055 * 102.13297 * 20.85120 * 14 13 11 28 28 O 1.42829 * 115.81868 * 141.74004 * 11 10 9 29 29 H 0.96995 * 120.00277 * 183.88180 * 1 2 3 30 30 H 1.08998 * 113.49736 * 268.34897 * 10 9 7 31 31 H 1.08998 * 113.50046 * 38.88926 * 10 9 7 32 32 H 1.09003 * 113.50105 * 321.11135 * 12 9 7 33 33 H 1.08999 * 113.50122 * 91.58401 * 12 9 7 34 34 H 1.09000 * 110.56422 * 348.20484 * 13 11 10 35 35 H 1.08995 * 110.56871 * 110.90972 * 13 11 10 36 36 H 0.97003 * 119.99373 * 334.99998 * 16 14 13 37 37 H 1.08001 * 119.53493 * 180.27704 * 22 20 19 38 38 H 1.07992 * 119.53680 * 179.97438 * 24 23 22 39 39 H 1.08995 * 110.58706 * 82.03175 * 27 14 13 40 40 H 1.09002 * 110.58784 * 204.78679 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.5035 2.0431 -1.4000 5 1 1.4449 2.6543 0.6943 6 1 3.5449 1.4416 0.7058 7 6 2.0102 -1.2022 0.0056 8 1 1.5313 -2.1004 0.3664 9 7 3.3019 -1.2492 -0.4463 10 6 4.2102 -0.3308 -1.1527 11 6 5.3736 -1.0776 -0.4993 12 6 4.3885 -2.2425 -0.4444 13 6 5.8334 -0.5355 0.8592 14 6 7.3703 -0.4046 0.7036 15 1 7.8787 -1.2705 1.1275 16 7 7.8536 0.8341 1.3187 17 6 9.1286 0.9213 1.7464 18 8 9.8776 -0.0280 1.6223 19 6 9.6161 2.1712 2.3677 20 6 9.5140 2.3767 3.7500 21 9 8.9659 1.4321 4.5454 22 6 9.9880 3.5606 4.2885 23 7 10.5194 4.4894 3.5197 24 6 10.6307 4.3405 2.2151 25 6 10.1888 3.1869 1.5904 26 9 10.3075 3.0426 0.2525 27 6 7.5392 -0.3587 -0.8371 28 8 6.5269 -1.2720 -1.3191 29 1 -0.4850 -0.8381 0.0569 30 1 4.1794 -0.4376 -2.2370 31 1 4.1197 0.7056 -0.8275 32 1 4.4485 -2.8193 0.4786 33 1 4.4056 -2.8699 -1.3356 34 1 5.3842 0.4381 1.0549 35 1 5.5854 -1.2373 1.6554 36 1 7.2558 1.5915 1.4181 37 1 9.9180 3.7268 5.3533 38 1 11.0729 5.1294 1.6250 39 1 7.3571 0.6481 -1.2128 40 1 8.5340 -0.6994 -1.1240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053815052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:15 Heat of formation + Delta-G solvation = -75.516542 kcal Electronic energy + Delta-G solvation = -29462.669289 eV Core-core repulsion = 24915.564250 eV Total energy + Delta-G solvation = -4547.105039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.37997 -50.35112 -42.02238 -41.37524 -40.38843 -38.25963 -36.01700 -34.54573 -34.01233 -31.96231 -31.67251 -30.15569 -27.43534 -27.18019 -26.51516 -24.80398 -23.56014 -23.16198 -22.13621 -20.82579 -19.81371 -19.51252 -19.39448 -19.26358 -18.11896 -17.51215 -17.39332 -17.18213 -16.98850 -16.86131 -16.66379 -16.60184 -16.00329 -15.87838 -15.58881 -15.31357 -15.01562 -14.86692 -14.73691 -14.45631 -14.37461 -14.21769 -13.47169 -13.37381 -13.29530 -12.89131 -12.78312 -12.49550 -12.44345 -12.05669 -11.86688 -11.56166 -11.36849 -11.20542 -11.01305 -10.81603 -10.56719 -10.35509 -10.17644 -9.30713 -8.71529 -5.49528 -0.71801 -0.52371 0.94655 1.35206 1.47241 1.55481 1.65936 2.13108 2.31228 2.52047 2.60529 2.72868 2.87404 3.02665 3.17176 3.23087 3.33420 3.37630 3.43708 3.49540 3.70057 3.87573 3.96514 4.16128 4.23953 4.41550 4.51562 4.57673 4.59489 4.62723 4.66629 4.66796 4.72355 4.79369 4.84062 5.10177 5.15611 5.21156 5.85917 5.91941 6.02323 6.38157 6.64132 6.67118 7.29165 8.23300 8.82206 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003248 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.341979 B = 8619.501754 C = 9306.170118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.075 4.075 3 Si 1.100 2.900 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.302 4.302 8 H 0.048 0.952 9 N -0.641 5.641 10 C 0.086 3.914 11 C 0.082 3.918 12 C 0.126 3.874 13 C -0.120 4.120 14 C 0.121 3.879 15 H 0.108 0.892 16 N -0.692 5.692 17 C 0.570 3.430 18 O -0.547 6.547 19 C -0.169 4.169 20 C 0.104 3.896 21 F -0.118 7.118 22 C 0.086 3.914 23 N -0.425 5.425 24 C 0.087 3.913 25 C 0.107 3.893 26 F -0.116 7.116 27 C 0.037 3.963 28 O -0.362 6.362 29 H 0.249 0.751 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.418 0.582 37 H 0.214 0.786 38 H 0.216 0.784 39 H 0.078 0.922 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.040 11.092 7.060 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.269 4.269 3 Si 0.926 3.074 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.170 1.170 7 C -0.429 4.429 8 H 0.066 0.934 9 N -0.372 5.372 10 C -0.040 4.040 11 C 0.041 3.959 12 C 0.000 4.000 13 C -0.158 4.158 14 C 0.016 3.984 15 H 0.126 0.874 16 N -0.344 5.344 17 C 0.354 3.646 18 O -0.424 6.424 19 C -0.181 4.181 20 C 0.081 3.919 21 F -0.097 7.097 22 C -0.072 4.072 23 N -0.132 5.132 24 C -0.072 4.072 25 C 0.084 3.916 26 F -0.094 7.094 27 C -0.040 4.040 28 O -0.278 6.278 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.256 0.744 37 H 0.231 0.769 38 H 0.232 0.768 39 H 0.096 0.904 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 26.436 12.566 7.186 30.140 hybrid contribution -1.435 -2.965 -0.580 3.344 sum 25.002 9.602 6.607 27.585 Atomic orbital electron populations 1.71037 1.06978 1.28976 1.52931 1.27095 0.96185 1.04568 0.99012 0.83406 0.74660 0.71831 0.77551 1.20785 1.22723 1.16989 1.19786 0.86707 0.95614 1.40809 0.93445 1.45592 1.10323 1.15706 1.65554 1.23285 0.88403 0.95542 0.96727 1.23138 0.84940 0.97410 0.90449 1.22577 0.84400 0.92730 1.00262 1.22678 0.93134 1.03893 0.96086 1.22591 0.94060 0.87873 0.93876 0.87387 1.45819 1.11436 1.17069 1.60077 1.17968 0.82398 0.86570 0.77634 1.90848 1.56277 1.38771 1.56541 1.20533 1.06581 0.96548 0.94483 1.18783 0.97862 0.89220 0.86001 1.91609 1.82606 1.63106 1.72357 1.23523 0.94157 0.86359 1.03196 1.67810 1.11222 1.29013 1.05153 1.23552 0.97047 0.95506 0.91074 1.18742 0.99779 0.94748 0.78312 1.91607 1.93304 1.95764 1.28740 1.24076 0.92960 0.95008 0.91994 1.88806 1.23041 1.60316 1.55681 0.94190 0.93304 0.92834 0.91922 0.93051 0.88915 0.88561 0.74412 0.76944 0.76772 0.90396 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.69 13.70 21.65 0.30 -60.39 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 1.10 50.52 25.33 68.60 1.74 52.26 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.24 -9.40 5.50 99.48 0.55 -8.85 16 7 C -0.30 -17.34 10.96 84.04 0.92 -16.42 16 8 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 9 N -0.64 -30.74 3.53 -739.22 -2.61 -33.35 16 10 C 0.09 3.46 6.68 83.48 0.56 4.02 16 11 C 0.08 2.74 1.66 -10.83 -0.02 2.73 16 12 C 0.13 4.91 8.20 83.39 0.68 5.60 16 13 C -0.12 -3.32 6.20 31.40 0.19 -3.13 16 14 C 0.12 2.85 3.51 46.39 0.16 3.01 16 15 H 0.11 2.71 7.54 -2.39 -0.02 2.69 16 16 N -0.69 -13.95 5.19 -438.80 -2.28 -16.23 16 17 C 0.57 12.98 6.74 86.79 0.58 13.56 16 18 O -0.55 -16.43 16.75 -3.86 -0.06 -16.50 16 19 C -0.17 -2.95 5.68 -19.82 -0.11 -3.06 16 20 C 0.10 1.53 7.34 22.77 0.17 1.70 16 21 F -0.12 -2.11 16.92 44.97 0.76 -1.35 16 22 C 0.09 0.84 11.16 84.75 0.95 1.79 16 23 N -0.43 -4.56 10.32 -195.63 -2.02 -6.58 16 24 C 0.09 0.80 11.16 84.75 0.95 1.75 16 25 C 0.11 1.50 7.34 22.78 0.17 1.66 16 26 F -0.12 -1.88 16.91 44.97 0.76 -1.11 16 27 C 0.04 0.90 7.42 72.69 0.54 1.44 16 28 O -0.36 -11.17 11.32 -148.98 -1.69 -12.86 16 29 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 2.10 3.52 -2.39 -0.01 2.09 16 32 H 0.06 2.30 7.91 -2.39 -0.02 2.28 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 2.54 6.41 -2.39 -0.02 2.53 16 35 H 0.10 2.66 7.81 -2.39 -0.02 2.64 16 36 H 0.42 6.64 8.40 -92.71 -0.78 5.86 16 37 H 0.21 0.72 8.06 -2.91 -0.02 0.69 16 38 H 0.22 0.54 8.06 -2.91 -0.02 0.51 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -74.97 346.30 1.25 -73.71 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.15 Total: 11.67 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.21 Total: 10.72 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -6.61 Total: -116.55 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.75 Total: -29.36 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 1.52 Total: -2.46 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.74 Total: 52.26 kcal Total: -74.97 1.25 -73.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053815052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.803 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds