Wall clock time and date at job start Tue Mar 31 2020 22:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86805 * 119.99916 * 2 1 4 4 H 1.48499 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.46923 * 30.00177 * 3 2 1 6 6 H 1.48500 * 109.47026 * 150.00454 * 3 2 1 7 7 C 1.38800 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99634 * 359.97438 * 7 2 1 9 9 S 1.76191 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99898 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47205 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00317 * 0.02562 * 11 10 9 13 13 N 1.34786 * 120.00071 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99972 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47245 * 174.95853 * 14 13 11 16 16 N 1.46502 * 112.85090 * 311.52219 * 15 14 13 17 17 C 1.34778 * 119.99807 * 294.02690 * 16 15 14 18 18 O 1.21618 * 119.99798 * 354.96687 * 17 16 15 19 19 C 1.47234 * 120.00127 * 174.97377 * 17 16 15 20 20 C 1.37008 * 127.19011 * 180.12461 * 19 17 16 21 21 N 1.33314 * 106.37046 * 180.23981 * 20 19 17 22 22 N 1.28510 * 109.44422 * 359.77658 * 21 20 19 23 23 N 1.28718 * 110.63628 * 359.97438 * 22 21 20 24 24 H 0.96996 * 126.03792 * 179.97438 * 23 22 21 25 25 C 1.53781 * 113.69030 * 82.78439 * 15 14 13 26 26 C 1.53778 * 87.08098 * 139.99489 * 25 15 14 27 27 C 1.53778 * 87.08329 * 334.56822 * 26 25 15 28 28 H 0.96999 * 119.99805 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47334 * 59.99819 * 10 9 7 30 30 H 1.09006 * 109.47182 * 299.99415 * 10 9 7 31 31 H 0.97000 * 119.99447 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47371 * 54.95858 * 14 13 11 33 33 H 1.08998 * 109.47363 * 294.96250 * 14 13 11 34 34 H 0.96997 * 120.00229 * 114.02205 * 16 15 14 35 35 H 1.08004 * 126.81385 * 359.97438 * 20 19 17 36 36 H 1.08997 * 113.61820 * 254.54254 * 25 15 14 37 37 H 1.09003 * 113.61379 * 25.44493 * 25 15 14 38 38 H 1.09002 * 113.61336 * 220.01853 * 26 25 15 39 39 H 1.09004 * 113.61472 * 89.11775 * 26 25 15 40 40 H 1.08997 * 113.61841 * 270.88439 * 27 26 25 41 41 H 1.09004 * 113.61743 * 139.97957 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9844 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3440 -2.2963 -0.0025 13 7 6.0458 -4.4947 -0.0016 14 6 7.4908 -4.7357 -0.0033 15 6 7.7576 -6.2368 0.1245 16 7 6.9916 -6.8607 1.2063 17 6 7.2416 -6.5275 2.4881 18 8 8.1629 -5.7791 2.7532 19 6 6.3996 -7.0696 3.5673 20 6 6.5187 -6.8291 4.9109 21 7 5.5520 -7.5289 5.5050 22 7 4.8710 -8.1583 4.6154 23 7 5.3311 -7.9178 3.4376 24 1 4.9856 -8.2772 2.6056 25 6 7.6692 -6.9958 -1.2100 26 6 8.8898 -7.8048 -0.7405 27 6 9.2524 -6.5977 0.1405 28 1 -0.4850 0.8401 0.0004 29 1 3.6433 -3.4317 -0.8906 30 1 3.6441 -3.4313 0.8894 31 1 5.4291 -5.2434 -0.0001 32 1 7.9474 -4.2127 0.8370 33 1 7.9193 -4.3685 -0.9358 34 1 6.3045 -7.5136 1.0001 35 1 7.2530 -6.2009 5.3933 36 1 6.7632 -7.5929 -1.3136 37 1 7.8678 -6.3717 -2.0813 38 1 9.6137 -8.0014 -1.5313 39 1 8.6294 -8.6977 -0.1720 40 1 9.8839 -5.8647 -0.3615 41 1 9.6245 -6.8733 1.1273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062579558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:00 Heat of formation + Delta-G solvation = 48.968715 kcal Electronic energy + Delta-G solvation = -26728.962823 eV Core-core repulsion = 22773.389007 eV Total energy + Delta-G solvation = -3955.573815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.78913 -41.21250 -39.16199 -38.47834 -34.62075 -34.34236 -33.37682 -32.46706 -31.71023 -30.17138 -27.60043 -26.36177 -25.64585 -25.13342 -23.58300 -22.85693 -21.69138 -20.57197 -19.87653 -19.71514 -18.03271 -17.25245 -16.90590 -16.73396 -16.50288 -15.92238 -15.56777 -15.43696 -15.12274 -14.98001 -14.69469 -14.63791 -13.99938 -13.88022 -13.51354 -13.13667 -12.88721 -12.81797 -12.64363 -12.35898 -11.94693 -11.71261 -11.53733 -11.43271 -11.28747 -11.20408 -11.02891 -11.00726 -10.65269 -10.50699 -10.00372 -9.89483 -9.74007 -9.53043 -9.06779 -9.00957 -8.53729 -6.95225 -6.31787 -4.03902 0.41164 1.87348 1.92426 2.23601 2.58386 2.71715 2.92258 3.25031 3.31547 3.49176 3.58133 3.75092 3.84603 4.05094 4.17746 4.23155 4.30917 4.33680 4.52020 4.69057 4.70906 4.79734 5.07405 5.10159 5.19470 5.22552 5.29084 5.36580 5.40725 5.54792 5.56153 5.65401 5.68719 5.74798 5.92565 5.98557 6.07488 6.42316 6.68863 7.44756 7.50204 7.81662 7.91124 8.37775 8.42528 9.14429 10.77439 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.003056 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.545457 B = 9158.735412 C =10756.762465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.087 0.913 9 S -0.139 6.139 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.515 6.515 13 N -0.733 5.733 14 C 0.123 3.877 15 C 0.139 3.861 16 N -0.708 5.708 17 C 0.602 3.398 18 O -0.496 6.496 19 C -0.070 4.070 20 C 0.039 3.961 21 N -0.267 5.267 22 N -0.041 5.041 23 N -0.375 5.375 24 H 0.450 0.550 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.131 4.131 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.393 0.607 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.397 0.603 35 H 0.206 0.794 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.787 -22.450 -0.364 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.105 0.895 9 S 0.087 5.913 10 C -0.274 4.274 11 C 0.315 3.685 12 O -0.389 6.389 13 N -0.388 5.388 14 C -0.002 4.002 15 C 0.053 3.947 16 N -0.361 5.361 17 C 0.386 3.614 18 O -0.367 6.367 19 C -0.204 4.204 20 C -0.120 4.120 21 N -0.132 5.132 22 N -0.024 5.024 23 N -0.102 5.102 24 H 0.296 0.704 25 C -0.172 4.172 26 C -0.178 4.178 27 C -0.170 4.170 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.227 0.773 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.222 0.778 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.598 -20.872 0.767 27.312 hybrid contribution -1.072 -0.711 -1.285 1.819 sum 16.526 -21.583 -0.518 27.188 Atomic orbital electron populations 1.69936 1.05927 1.27821 1.47971 1.24710 0.94450 0.98982 0.93105 0.86739 0.81940 0.83262 0.79957 1.19170 1.19868 1.15890 1.22304 0.88277 0.97512 1.58952 0.89472 1.84824 1.09247 0.99781 1.97405 1.23265 0.93986 1.04644 1.05526 1.20278 0.90578 0.82259 0.75340 1.90712 1.58720 1.42090 1.47349 1.45799 1.07110 1.07852 1.77991 1.21596 0.82077 0.93134 1.03427 1.21693 0.93816 0.92010 0.87183 1.45497 1.40330 1.45208 1.05034 1.16690 0.83139 0.80693 0.80920 1.90908 1.28852 1.34489 1.82429 1.22343 0.96256 1.03837 0.97955 1.23978 0.98921 0.99897 0.89238 1.75048 1.05482 1.08635 1.24062 1.78266 1.19327 1.18346 0.86418 1.45587 1.21516 1.32465 1.10638 0.70402 1.23301 0.99418 0.98747 0.95724 1.22871 0.97964 0.97257 0.99745 1.23192 0.94115 0.98093 1.01595 0.91899 0.88604 0.88795 0.77338 0.89880 0.90390 0.76873 0.77765 0.90626 0.87805 0.90628 0.90197 0.88434 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.14 7.85 -10.98 -0.09 9.06 16 12 O -0.51 -11.05 15.86 5.56 0.09 -10.96 16 13 N -0.73 -8.49 5.38 -60.30 -0.32 -8.81 16 14 C 0.12 1.27 4.92 -4.05 -0.02 1.25 16 15 C 0.14 0.89 0.63 -131.01 -0.08 0.81 16 16 N -0.71 -3.78 4.53 -47.98 -0.22 -4.00 16 17 C 0.60 5.13 7.36 -12.60 -0.09 5.04 16 18 O -0.50 -6.01 14.92 5.26 0.08 -5.93 16 19 C -0.07 -0.57 7.17 -82.33 -0.59 -1.16 16 20 C 0.04 0.38 11.87 -17.35 -0.21 0.17 16 21 N -0.27 -3.03 12.35 30.47 0.38 -2.65 16 22 N -0.04 -0.41 13.35 60.35 0.81 0.40 16 23 N -0.37 -2.35 6.98 33.31 0.23 -2.11 16 24 H 0.45 0.85 8.33 -190.33 -1.59 -0.74 16 25 C -0.13 -0.55 7.37 -25.92 -0.19 -0.74 16 26 C -0.14 -0.58 7.99 -25.92 -0.21 -0.78 16 27 C -0.13 -0.82 6.95 -25.92 -0.18 -1.00 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 31 H 0.39 3.32 8.11 -40.82 -0.33 2.99 16 32 H 0.08 1.13 7.34 -51.93 -0.38 0.75 16 33 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 34 H 0.40 0.77 7.94 -40.82 -0.32 0.44 16 35 H 0.21 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 37 H 0.10 0.45 7.96 -51.93 -0.41 0.04 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.08 0.64 7.19 -51.93 -0.37 0.27 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -38.49 366.35 -6.95 -45.44 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.35 Total: -1.29 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.22 Total: -1.45 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 1.65 Total: -42.91 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.17 Total: -16.89 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.49 -6.95 -45.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.406 kcal (2) G-P(sol) polarization free energy of solvation -38.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds