Wall clock time and date at job start Tue Mar 31 2020 22:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86805 * 119.99916 * 2 1 4 4 H 1.48499 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.46923 * 30.00177 * 3 2 1 6 6 H 1.48500 * 109.47026 * 150.00454 * 3 2 1 7 7 C 1.38800 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99634 * 359.97438 * 7 2 1 9 9 S 1.76191 * 119.99961 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99898 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47205 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00317 * 0.02562 * 11 10 9 13 13 N 1.34786 * 120.00071 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99972 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47245 * 174.95853 * 14 13 11 16 16 N 1.46502 * 112.85090 * 311.52219 * 15 14 13 17 17 C 1.34778 * 119.99807 * 294.02690 * 16 15 14 18 18 O 1.21618 * 119.99798 * 354.96687 * 17 16 15 19 19 C 1.47234 * 120.00127 * 174.97377 * 17 16 15 20 20 C 1.37008 * 127.19011 * 180.12461 * 19 17 16 21 21 N 1.33314 * 106.37046 * 180.23981 * 20 19 17 22 22 N 1.28510 * 109.44422 * 359.77658 * 21 20 19 23 23 N 1.28718 * 110.63628 * 359.97438 * 22 21 20 24 24 H 0.96996 * 126.03792 * 179.97438 * 23 22 21 25 25 C 1.53781 * 113.69030 * 82.78439 * 15 14 13 26 26 C 1.53778 * 87.08098 * 139.99489 * 25 15 14 27 27 C 1.53778 * 87.08329 * 334.56822 * 26 25 15 28 28 H 0.96999 * 119.99805 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47334 * 59.99819 * 10 9 7 30 30 H 1.09006 * 109.47182 * 299.99415 * 10 9 7 31 31 H 0.97000 * 119.99447 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47371 * 54.95858 * 14 13 11 33 33 H 1.08998 * 109.47363 * 294.96250 * 14 13 11 34 34 H 0.96997 * 120.00229 * 114.02205 * 16 15 14 35 35 H 1.08004 * 126.81385 * 359.97438 * 20 19 17 36 36 H 1.08997 * 113.61820 * 254.54254 * 25 15 14 37 37 H 1.09003 * 113.61379 * 25.44493 * 25 15 14 38 38 H 1.09002 * 113.61336 * 220.01853 * 26 25 15 39 39 H 1.09004 * 113.61472 * 89.11775 * 26 25 15 40 40 H 1.08997 * 113.61841 * 270.88439 * 27 26 25 41 41 H 1.09004 * 113.61743 * 139.97957 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9844 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3440 -2.2963 -0.0025 13 7 6.0458 -4.4947 -0.0016 14 6 7.4908 -4.7357 -0.0033 15 6 7.7576 -6.2368 0.1245 16 7 6.9916 -6.8607 1.2063 17 6 7.2416 -6.5275 2.4881 18 8 8.1629 -5.7791 2.7532 19 6 6.3996 -7.0696 3.5673 20 6 6.5187 -6.8291 4.9109 21 7 5.5520 -7.5289 5.5050 22 7 4.8710 -8.1583 4.6154 23 7 5.3311 -7.9178 3.4376 24 1 4.9856 -8.2772 2.6056 25 6 7.6692 -6.9958 -1.2100 26 6 8.8898 -7.8048 -0.7405 27 6 9.2524 -6.5977 0.1405 28 1 -0.4850 0.8401 0.0004 29 1 3.6433 -3.4317 -0.8906 30 1 3.6441 -3.4313 0.8894 31 1 5.4291 -5.2434 -0.0001 32 1 7.9474 -4.2127 0.8370 33 1 7.9193 -4.3685 -0.9358 34 1 6.3045 -7.5136 1.0001 35 1 7.2530 -6.2009 5.3933 36 1 6.7632 -7.5929 -1.3136 37 1 7.8678 -6.3717 -2.0813 38 1 9.6137 -8.0014 -1.5313 39 1 8.6294 -8.6977 -0.1720 40 1 9.8839 -5.8647 -0.3615 41 1 9.6245 -6.8733 1.1273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062579558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:59 Heat of formation + Delta-G solvation = 17.020540 kcal Electronic energy + Delta-G solvation = -26730.348199 eV Core-core repulsion = 22773.389007 eV Total energy + Delta-G solvation = -3956.959192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.48370 -41.87050 -40.43493 -39.18156 -35.58284 -35.20289 -34.69005 -34.05276 -32.41272 -31.51942 -28.58069 -27.83035 -26.78990 -25.86078 -24.29861 -23.50275 -22.35776 -21.81528 -20.50198 -20.33948 -19.91261 -18.10458 -17.87988 -17.63470 -17.47841 -17.12114 -16.79284 -16.61723 -16.15190 -16.00259 -15.68504 -15.35921 -15.28105 -14.97555 -14.84396 -14.68563 -14.12204 -13.51647 -13.38212 -13.36934 -13.27858 -13.03488 -12.84130 -12.65348 -12.43784 -11.98717 -11.94282 -11.89261 -11.86921 -11.52644 -11.18939 -11.13349 -11.08375 -10.72587 -10.55701 -10.28356 -10.17985 -9.02110 -8.53701 -6.24528 -0.26702 0.96465 1.12660 1.29447 1.33675 1.45031 1.52279 1.53818 1.69805 1.89358 2.18447 2.24033 2.69450 2.84879 3.19059 3.29397 3.53005 3.55838 3.70048 3.84102 3.87478 3.92681 4.01958 4.17658 4.32058 4.40769 4.47011 4.72347 4.82100 4.84936 4.85911 4.98838 5.05696 5.13260 5.15425 5.35072 5.53650 5.62762 5.68568 6.09021 6.18001 6.40141 6.85060 6.91882 7.10382 7.15370 8.58630 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.003056 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.545457 B = 9158.735412 C =10756.762465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.239 1.239 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.109 4.109 11 C 0.533 3.467 12 O -0.562 6.562 13 N -0.704 5.704 14 C 0.123 3.877 15 C 0.139 3.861 16 N -0.689 5.689 17 C 0.605 3.395 18 O -0.535 6.535 19 C -0.063 4.063 20 C 0.023 3.977 21 N -0.299 5.299 22 N -0.057 5.057 23 N -0.345 5.345 24 H 0.469 0.531 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.138 4.138 28 H 0.277 0.723 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.413 0.587 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.418 0.582 35 H 0.212 0.788 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.376 -24.419 -1.847 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.163 1.163 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.260 4.260 11 C 0.318 3.682 12 O -0.440 6.440 13 N -0.358 5.358 14 C -0.002 4.002 15 C 0.052 3.948 16 N -0.343 5.343 17 C 0.388 3.612 18 O -0.409 6.409 19 C -0.198 4.198 20 C -0.137 4.137 21 N -0.163 5.163 22 N -0.039 5.039 23 N -0.076 5.076 24 H 0.320 0.680 25 C -0.159 4.159 26 C -0.166 4.166 27 C -0.177 4.177 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.250 0.750 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.256 0.744 35 H 0.229 0.771 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.134 -22.948 -0.751 29.258 hybrid contribution -1.198 -0.258 -0.852 1.492 sum 16.936 -23.206 -1.603 28.774 Atomic orbital electron populations 1.70009 1.07257 1.29034 1.49118 1.25534 0.95241 1.02171 0.92884 0.85898 0.80635 0.79763 0.80291 1.18493 1.18384 1.16302 1.22444 0.90171 0.96695 1.58282 0.91841 1.84796 1.06505 1.06246 1.97579 1.23246 0.95780 0.99656 1.07326 1.19995 0.89406 0.83464 0.75344 1.90705 1.59365 1.43924 1.50032 1.45499 1.08298 1.06521 1.75439 1.21694 0.80418 0.95785 1.02264 1.21722 0.94363 0.89746 0.88931 1.45324 1.40323 1.44863 1.03744 1.16727 0.82558 0.80149 0.81726 1.90907 1.30524 1.36333 1.83102 1.22208 0.96426 1.03795 0.97381 1.24246 0.99065 1.00204 0.90157 1.75024 1.06424 1.09716 1.25142 1.78189 1.19678 1.18753 0.87286 1.45518 1.20269 1.31036 1.10797 0.67958 1.23301 1.00617 0.98237 0.93740 1.22833 0.97967 0.96500 0.99324 1.23240 0.93688 0.99474 1.01295 0.91343 0.86372 0.87362 0.75012 0.93260 0.89958 0.74399 0.77114 0.88006 0.87547 0.89748 0.89170 0.88643 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.53 13.97 21.65 0.30 -55.22 16 2 C 0.05 2.76 5.50 84.86 0.47 3.23 16 3 Si 0.91 45.01 27.74 68.60 1.90 46.91 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 7 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 10 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 11 C 0.53 17.58 7.85 87.66 0.69 18.27 16 12 O -0.56 -23.97 15.86 -3.01 -0.05 -24.02 16 13 N -0.70 -14.58 5.38 -463.07 -2.49 -17.08 16 14 C 0.12 2.36 4.92 86.38 0.43 2.79 16 15 C 0.14 1.42 0.63 4.13 0.00 1.42 16 16 N -0.69 -5.36 4.53 -423.95 -1.92 -7.28 16 17 C 0.60 9.40 7.36 86.61 0.64 10.04 16 18 O -0.53 -12.88 14.92 -4.09 -0.06 -12.94 16 19 C -0.06 -0.93 7.17 40.41 0.29 -0.64 16 20 C 0.02 0.44 11.87 84.18 1.00 1.44 16 21 N -0.30 -6.69 12.35 -57.50 -0.71 -7.40 16 22 N -0.06 -1.05 13.35 37.02 0.49 -0.56 16 23 N -0.35 -3.58 6.98 -48.52 -0.34 -3.91 16 24 H 0.47 0.20 8.33 -219.90 -1.83 -1.63 16 25 C -0.12 -0.48 7.37 31.12 0.23 -0.25 16 26 C -0.13 -0.59 7.99 31.12 0.25 -0.35 16 27 C -0.14 -1.48 6.95 31.12 0.22 -1.27 16 28 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 30 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 31 H 0.41 5.37 8.11 -92.71 -0.75 4.62 16 32 H 0.05 1.34 7.34 -2.39 -0.02 1.32 16 33 H 0.08 1.56 7.94 -2.39 -0.02 1.54 16 34 H 0.42 -0.21 7.94 -92.71 -0.74 -0.94 16 35 H 0.21 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.10 -0.05 8.09 -2.39 -0.02 -0.07 16 37 H 0.11 0.48 7.96 -2.39 -0.02 0.46 16 38 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.06 0.95 7.19 -2.38 -0.02 0.93 16 Total: -1.00 -86.34 366.35 -0.84 -87.17 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.24 Total: 2.89 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.32 Total: 1.39 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.66 Total: -91.45 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.11 Total: -36.96 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -86.34 -0.84 -87.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.195 kcal (2) G-P(sol) polarization free energy of solvation -86.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds