Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 120.00227 * 2 1 4 4 H 1.48504 * 109.46719 * 269.99827 * 3 2 1 5 5 H 1.48503 * 109.47163 * 29.99449 * 3 2 1 6 6 H 1.48497 * 109.47355 * 149.99664 * 3 2 1 7 7 C 1.38799 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07987 * 120.00463 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99551 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99742 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46757 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00292 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99678 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99787 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46737 * 174.95851 * 14 13 11 16 16 N 1.46496 * 112.85079 * 311.51391 * 15 14 13 17 17 C 1.34777 * 119.99927 * 294.03181 * 16 15 14 18 18 O 1.21555 * 119.99993 * 354.96801 * 17 16 15 19 19 C 1.47875 * 120.00182 * 174.97274 * 17 16 15 20 20 N 1.34547 * 126.05168 * 179.97438 * 19 17 16 21 21 C 1.30870 * 107.27023 * 179.97438 * 20 19 17 22 22 N 1.34587 * 107.62421 * 359.97438 * 21 20 19 23 23 H 0.97004 * 125.74643 * 179.97438 * 22 21 20 24 24 N 1.28852 * 108.50524 * 0.02562 * 22 21 20 25 25 C 1.53782 * 113.69214 * 82.78594 * 15 14 13 26 26 C 1.53776 * 87.08168 * 139.98751 * 25 15 14 27 27 C 1.53782 * 87.08474 * 334.56851 * 26 25 15 28 28 H 0.96998 * 119.99643 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46871 * 60.00613 * 10 9 7 30 30 H 1.08991 * 109.47336 * 299.99692 * 10 9 7 31 31 H 0.96998 * 119.99830 * 0.02562 * 13 11 10 32 32 H 1.08992 * 109.47378 * 54.95549 * 14 13 11 33 33 H 1.09001 * 109.46599 * 294.95389 * 14 13 11 34 34 H 0.96994 * 120.00188 * 114.02769 * 16 15 14 35 35 H 1.07993 * 126.18495 * 179.73810 * 21 20 19 36 36 H 1.09000 * 113.61171 * 254.53959 * 25 15 14 37 37 H 1.08999 * 113.61233 * 25.44196 * 25 15 14 38 38 H 1.08993 * 113.62009 * 220.01873 * 26 25 15 39 39 H 1.08999 * 113.61301 * 89.11304 * 26 25 15 40 40 H 1.09004 * 113.60974 * 270.88380 * 27 26 25 41 41 H 1.08999 * 113.62098 * 139.97802 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6528 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3302 -7.7151 0.0019 15 6 3.4971 -8.6966 -0.1241 16 7 4.4224 -8.3448 -1.2041 17 6 4.0111 -8.3942 -2.4866 18 8 2.9035 -8.8175 -2.7538 19 6 4.9075 -7.9335 -3.5688 20 7 4.6236 -7.9289 -4.8840 21 6 5.6703 -7.4486 -5.5057 22 7 6.5983 -7.1567 -4.5756 23 1 7.4774 -6.7852 -4.7493 24 7 6.1228 -7.4549 -3.4158 25 6 4.1962 -9.0003 1.2115 26 6 4.2873 -10.4616 0.7415 27 6 3.0622 -10.1716 -0.1417 28 1 -0.4849 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1835 0.0022 32 1 1.6506 -7.8486 -0.8397 33 1 1.7963 -7.9030 0.9334 34 1 5.3309 -8.0763 -0.9961 35 1 5.7724 -7.3147 -6.5724 36 1 5.1661 -8.5142 1.3171 37 1 3.5547 -8.8607 2.0816 38 1 4.0941 -11.1873 1.5315 39 1 5.1917 -10.6823 0.1746 40 1 2.1108 -10.3523 0.3586 41 1 3.1167 -10.6312 -1.1285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062581115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = 43.242623 kcal Electronic energy + Delta-G solvation = -26637.423642 eV Core-core repulsion = 22681.601525 eV Total energy + Delta-G solvation = -3955.822117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.83624 -40.90784 -38.85200 -38.15349 -34.20584 -33.77650 -33.62084 -32.40431 -31.64106 -29.89509 -27.38222 -26.11590 -25.48081 -25.15037 -23.38253 -22.66617 -21.03476 -20.21757 -19.52552 -19.20507 -17.88207 -17.74029 -16.76348 -16.57385 -16.24490 -15.72719 -15.21319 -15.12905 -15.12202 -14.78616 -14.69096 -14.28475 -13.90217 -13.69832 -13.20815 -12.83109 -12.66171 -12.60314 -12.57687 -12.08192 -11.67587 -11.30838 -11.15999 -11.07926 -11.05093 -11.00225 -10.89589 -10.74760 -10.71637 -10.24138 -10.12061 -9.79795 -9.43400 -9.22977 -9.04733 -8.76618 -8.19103 -6.46079 -6.19034 -3.89079 0.97664 1.78490 2.17351 2.53073 3.09104 3.10730 3.19992 3.23112 3.28958 3.33760 3.75316 3.83097 4.07316 4.10439 4.22569 4.31414 4.46671 4.48368 4.58161 5.03769 5.15731 5.23634 5.34935 5.43224 5.52584 5.56146 5.57282 5.65811 5.71027 5.78464 5.83876 5.90574 5.93578 6.01440 6.17157 6.25759 6.31117 6.70677 7.06614 7.59106 7.61473 7.79123 7.91400 8.37437 8.71079 9.25868 10.88408 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.002993 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.389897 B = 9353.530953 C =11060.741889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.058 6.058 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.734 5.734 14 C 0.122 3.878 15 C 0.141 3.859 16 N -0.696 5.696 17 C 0.619 3.381 18 O -0.493 6.493 19 C 0.153 3.847 20 N -0.459 5.459 21 C 0.199 3.801 22 N -0.397 5.397 23 H 0.452 0.548 24 N -0.277 5.277 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.133 4.133 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.394 0.606 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.408 0.592 35 H 0.232 0.768 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.500 -20.683 -4.888 28.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.390 6.390 13 N -0.388 5.388 14 C -0.003 4.003 15 C 0.054 3.946 16 N -0.350 5.350 17 C 0.401 3.599 18 O -0.362 6.362 19 C -0.128 4.128 20 N -0.183 5.183 21 C -0.099 4.099 22 N -0.120 5.120 23 H 0.299 0.701 24 N -0.119 5.119 25 C -0.171 4.171 26 C -0.178 4.178 27 C -0.172 4.172 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.227 0.773 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.244 0.756 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.282 -21.339 -4.572 27.228 hybrid contribution 3.663 1.958 -0.521 4.186 sum 19.946 -19.381 -5.093 28.274 Atomic orbital electron populations 1.70023 1.05932 1.27406 1.46866 1.24990 0.95018 0.98977 0.94604 0.86177 0.79403 0.81656 0.78300 1.20324 1.20728 1.19733 1.22867 0.94871 0.91761 1.58888 0.91034 1.85425 1.04909 0.96173 1.96677 1.23511 1.06486 0.95581 1.04643 1.20275 0.86565 0.86214 0.75298 1.90705 1.15309 1.85546 1.47393 1.45837 1.09666 1.05347 1.77926 1.21588 0.95155 0.80308 1.03239 1.21657 0.90354 0.95294 0.87281 1.45319 1.15758 1.69726 1.04199 1.16224 0.84818 0.78239 0.80669 1.90867 1.19341 1.43553 1.82422 1.23831 0.91143 1.04970 0.92860 1.71331 1.25058 1.18437 1.03518 1.26790 0.84996 0.98906 0.99207 1.45121 1.17500 1.45684 1.03735 0.70098 1.74214 1.12395 1.17471 1.07841 1.23283 1.01376 0.96787 0.95695 1.22860 0.98720 0.96544 0.99642 1.23203 0.98874 0.93566 1.01519 0.92196 0.89334 0.89594 0.77269 0.90004 0.90528 0.75587 0.75183 0.90568 0.87930 0.90795 0.90171 0.88533 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.56 9.50 30.94 0.29 -15.27 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 11 C 0.53 10.62 7.85 -10.98 -0.09 10.53 16 12 O -0.52 -12.50 15.86 5.56 0.09 -12.41 16 13 N -0.73 -10.70 5.38 -60.29 -0.32 -11.03 16 14 C 0.12 1.63 4.93 -4.04 -0.02 1.61 16 15 C 0.14 1.34 0.63 -131.00 -0.08 1.26 16 16 N -0.70 -6.67 4.53 -47.77 -0.22 -6.88 16 17 C 0.62 8.15 7.39 -12.32 -0.09 8.05 16 18 O -0.49 -8.28 15.09 5.32 0.08 -8.20 16 19 C 0.15 1.86 7.96 -156.35 -1.24 0.62 16 20 N -0.46 -5.62 11.41 -12.36 -0.14 -5.76 16 21 C 0.20 1.30 13.14 -90.48 -1.19 0.11 16 22 N -0.40 -2.17 6.93 29.56 0.20 -1.96 16 23 H 0.45 0.44 8.96 -190.21 -1.71 -1.26 16 24 N -0.28 -2.51 11.99 32.08 0.38 -2.13 16 25 C -0.13 -0.89 7.37 -25.92 -0.19 -1.09 16 26 C -0.14 -0.91 7.99 -25.92 -0.21 -1.12 16 27 C -0.13 -1.18 6.95 -25.92 -0.18 -1.36 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 31 H 0.39 4.63 8.11 -40.82 -0.33 4.30 16 32 H 0.08 1.37 7.34 -51.93 -0.38 0.99 16 33 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 34 H 0.41 2.97 8.37 -40.82 -0.34 2.63 16 35 H 0.23 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.10 0.67 7.96 -51.93 -0.41 0.26 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.08 0.87 7.19 -51.93 -0.37 0.49 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -41.51 370.02 -10.18 -51.69 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.46 Total: 1.79 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.87 Total: 2.40 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.64 Total: -53.59 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.17 Total: -20.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -41.51 -10.18 -51.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062581115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.931 kcal (2) G-P(sol) polarization free energy of solvation -41.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds