Wall clock time and date at job start Tue Mar 31 2020 22:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 120.00227 * 2 1 4 4 H 1.48504 * 109.46719 * 269.99827 * 3 2 1 5 5 H 1.48503 * 109.47163 * 29.99449 * 3 2 1 6 6 H 1.48497 * 109.47355 * 149.99664 * 3 2 1 7 7 C 1.38799 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07987 * 120.00463 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99551 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99742 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46757 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00292 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99678 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99787 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46737 * 174.95851 * 14 13 11 16 16 N 1.46496 * 112.85079 * 311.51391 * 15 14 13 17 17 C 1.34777 * 119.99927 * 294.03181 * 16 15 14 18 18 O 1.21555 * 119.99993 * 354.96801 * 17 16 15 19 19 C 1.47875 * 120.00182 * 174.97274 * 17 16 15 20 20 N 1.34547 * 126.05168 * 179.97438 * 19 17 16 21 21 C 1.30870 * 107.27023 * 179.97438 * 20 19 17 22 22 N 1.34587 * 107.62421 * 359.97438 * 21 20 19 23 23 H 0.97004 * 125.74643 * 179.97438 * 22 21 20 24 24 N 1.28852 * 108.50524 * 0.02562 * 22 21 20 25 25 C 1.53782 * 113.69214 * 82.78594 * 15 14 13 26 26 C 1.53776 * 87.08168 * 139.98751 * 25 15 14 27 27 C 1.53782 * 87.08474 * 334.56851 * 26 25 15 28 28 H 0.96998 * 119.99643 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46871 * 60.00613 * 10 9 7 30 30 H 1.08991 * 109.47336 * 299.99692 * 10 9 7 31 31 H 0.96998 * 119.99830 * 0.02562 * 13 11 10 32 32 H 1.08992 * 109.47378 * 54.95549 * 14 13 11 33 33 H 1.09001 * 109.46599 * 294.95389 * 14 13 11 34 34 H 0.96994 * 120.00188 * 114.02769 * 16 15 14 35 35 H 1.07993 * 126.18495 * 179.73810 * 21 20 19 36 36 H 1.09000 * 113.61171 * 254.53959 * 25 15 14 37 37 H 1.08999 * 113.61233 * 25.44196 * 25 15 14 38 38 H 1.08993 * 113.62009 * 220.01873 * 26 25 15 39 39 H 1.08999 * 113.61301 * 89.11304 * 26 25 15 40 40 H 1.09004 * 113.60974 * 270.88380 * 27 26 25 41 41 H 1.08999 * 113.62098 * 139.97802 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6528 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3302 -7.7151 0.0019 15 6 3.4971 -8.6966 -0.1241 16 7 4.4224 -8.3448 -1.2041 17 6 4.0111 -8.3942 -2.4866 18 8 2.9035 -8.8175 -2.7538 19 6 4.9075 -7.9335 -3.5688 20 7 4.6236 -7.9289 -4.8840 21 6 5.6703 -7.4486 -5.5057 22 7 6.5983 -7.1567 -4.5756 23 1 7.4774 -6.7852 -4.7493 24 7 6.1228 -7.4549 -3.4158 25 6 4.1962 -9.0003 1.2115 26 6 4.2873 -10.4616 0.7415 27 6 3.0622 -10.1716 -0.1417 28 1 -0.4849 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1835 0.0022 32 1 1.6506 -7.8486 -0.8397 33 1 1.7963 -7.9030 0.9334 34 1 5.3309 -8.0763 -0.9961 35 1 5.7724 -7.3147 -6.5724 36 1 5.1661 -8.5142 1.3171 37 1 3.5547 -8.8607 2.0816 38 1 4.0941 -11.1873 1.5315 39 1 5.1917 -10.6823 0.1746 40 1 2.1108 -10.3523 0.3586 41 1 3.1167 -10.6312 -1.1285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062581115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:39 Heat of formation + Delta-G solvation = 10.017651 kcal Electronic energy + Delta-G solvation = -26638.864385 eV Core-core repulsion = 22681.601525 eV Total energy + Delta-G solvation = -3957.262860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.48501 -41.80725 -40.36995 -39.09409 -35.54164 -34.59986 -34.56824 -34.46919 -32.33006 -31.44760 -28.58147 -27.63168 -26.77458 -26.04268 -24.01565 -23.46901 -22.00661 -21.56315 -20.36815 -19.93752 -19.73629 -18.51086 -18.02198 -17.57892 -17.40213 -16.89372 -16.79551 -16.52216 -16.11201 -15.84900 -15.75095 -15.63915 -15.18098 -14.84241 -14.65386 -14.46886 -14.04567 -13.45265 -13.29527 -13.23699 -13.18226 -12.89950 -12.79406 -12.60655 -11.99169 -11.92115 -11.81127 -11.73524 -11.61931 -11.46335 -11.15454 -11.11715 -11.02779 -10.78833 -10.29817 -10.21014 -10.15174 -8.69122 -8.35344 -6.14509 0.22405 1.12776 1.24209 1.41991 1.44494 1.52590 1.57389 1.58162 1.94830 2.21888 2.24509 2.27251 2.98600 3.11137 3.28994 3.36447 3.50559 3.59568 3.69724 3.90329 3.97240 4.04356 4.23764 4.35535 4.44184 4.47735 4.72340 4.82324 4.84773 4.86416 5.03462 5.06750 5.13113 5.18329 5.22882 5.38363 5.40184 5.56916 5.91092 6.18648 6.28572 6.44250 6.92175 7.05228 7.07119 7.20126 8.74099 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.002993 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.389897 B = 9353.530953 C =11060.741889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.125 4.125 11 C 0.530 3.470 12 O -0.566 6.566 13 N -0.705 5.705 14 C 0.124 3.876 15 C 0.136 3.864 16 N -0.678 5.678 17 C 0.613 3.387 18 O -0.544 6.544 19 C 0.119 3.881 20 N -0.519 5.519 21 C 0.217 3.783 22 N -0.377 5.377 23 H 0.473 0.527 24 N -0.268 5.268 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.140 4.140 28 H 0.271 0.729 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.412 0.588 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.422 0.578 35 H 0.281 0.719 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.829 -20.312 -4.532 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.277 4.277 11 C 0.316 3.684 12 O -0.444 6.444 13 N -0.358 5.358 14 C -0.001 4.001 15 C 0.049 3.951 16 N -0.332 5.332 17 C 0.396 3.604 18 O -0.417 6.417 19 C -0.160 4.160 20 N -0.245 5.245 21 C -0.080 4.080 22 N -0.103 5.103 23 H 0.325 0.675 24 N -0.112 5.112 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.178 4.178 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.249 0.751 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.261 0.739 35 H 0.296 0.704 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.738 -20.985 -4.200 29.801 hybrid contribution 2.402 1.741 -0.726 3.055 sum 23.140 -19.244 -4.926 30.497 Atomic orbital electron populations 1.70196 1.08066 1.28656 1.47909 1.26173 0.95983 1.03418 0.93655 0.84920 0.78243 0.75803 0.78786 1.19351 1.20222 1.17956 1.23197 0.95338 0.91871 1.59044 0.89851 1.85655 1.10521 0.99312 1.97041 1.23330 1.03554 0.94219 1.06563 1.20150 0.86274 0.86803 0.75187 1.90694 1.17494 1.86112 1.50132 1.45548 1.09991 1.04850 1.75457 1.21674 0.96502 0.80025 1.01923 1.21780 0.89836 0.94310 0.89170 1.45201 1.16239 1.68562 1.03174 1.16586 0.84426 0.77575 0.81836 1.90833 1.21533 1.46002 1.83336 1.23642 0.92197 1.07344 0.92846 1.71257 1.28143 1.20929 1.04141 1.27622 0.83380 0.96219 1.00804 1.45163 1.18204 1.44266 1.02648 0.67483 1.74112 1.11058 1.16690 1.09353 1.23290 1.02112 0.96674 0.93572 1.22802 0.97312 0.96890 0.99216 1.23257 1.00566 0.92924 1.01092 0.91965 0.86710 0.87999 0.75138 0.94001 0.89765 0.73937 0.70420 0.88227 0.87165 0.89161 0.89492 0.88381 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.55 -31.77 9.50 67.95 0.65 -31.13 16 8 H 0.08 4.47 7.80 -2.92 -0.02 4.45 16 9 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.81 16 11 C 0.53 21.38 7.85 87.66 0.69 22.07 16 12 O -0.57 -28.61 15.86 -3.02 -0.05 -28.66 16 13 N -0.70 -20.10 5.38 -463.05 -2.49 -22.59 16 14 C 0.12 3.34 4.93 86.38 0.43 3.77 16 15 C 0.14 2.48 0.63 4.13 0.00 2.49 16 16 N -0.68 -12.46 4.53 -423.33 -1.92 -14.38 16 17 C 0.61 16.62 7.39 86.80 0.64 17.26 16 18 O -0.54 -19.64 15.09 -3.89 -0.06 -19.70 16 19 C 0.12 2.89 7.96 137.13 1.09 3.98 16 20 N -0.52 -12.61 11.41 -193.03 -2.20 -14.81 16 21 C 0.22 2.35 13.14 180.30 2.37 4.71 16 22 N -0.38 -3.09 6.93 -60.38 -0.42 -3.51 16 23 H 0.47 -0.74 8.96 -219.79 -1.97 -2.71 16 24 N -0.27 -4.38 11.99 -52.43 -0.63 -5.01 16 25 C -0.12 -1.23 7.37 31.12 0.23 -1.00 16 26 C -0.12 -1.30 7.99 31.12 0.25 -1.05 16 27 C -0.14 -2.47 6.95 31.12 0.22 -2.25 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 30 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 31 H 0.41 8.79 8.11 -92.71 -0.75 8.04 16 32 H 0.04 1.50 7.34 -2.39 -0.02 1.49 16 33 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16 34 H 0.42 5.26 8.37 -92.71 -0.78 4.48 16 35 H 0.28 -0.31 8.06 -2.91 -0.02 -0.33 16 36 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 37 H 0.11 1.07 7.96 -2.39 -0.02 1.05 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 1.66 8.10 -2.39 -0.02 1.64 16 41 H 0.06 1.31 7.19 -2.39 -0.02 1.29 16 Total: -1.00 -97.35 370.02 -1.54 -98.89 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -2.38 Total: 15.31 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 7.46 Total: 15.21 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -7.37 Total: -116.98 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.11 Total: -48.35 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -97.35 -1.54 -98.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062581115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.905 kcal (2) G-P(sol) polarization free energy of solvation -97.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds