Wall clock time and date at job start Tue Mar 31 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00100 * 2 1 4 4 H 1.48501 * 109.46984 * 269.99681 * 3 2 1 5 5 H 1.48497 * 109.47015 * 29.99539 * 3 2 1 6 6 H 1.48496 * 109.46901 * 149.99760 * 3 2 1 7 7 C 1.38800 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00119 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99856 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46852 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00058 * 184.70772 * 13 11 10 15 15 C 1.52996 * 112.90828 * 285.02912 * 14 13 11 16 16 N 1.46497 * 109.47507 * 311.27143 * 15 14 13 17 17 C 1.34776 * 120.00540 * 174.96127 * 16 15 14 18 18 O 1.21623 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.47236 * 120.00456 * 180.02562 * 17 16 15 20 20 C 1.37003 * 127.18762 * 179.68148 * 19 17 16 21 21 N 1.33329 * 106.36692 * 179.90167 * 20 19 17 22 22 N 1.28512 * 109.43924 * 0.37409 * 21 20 19 23 23 N 1.28708 * 110.64162 * 359.76029 * 22 21 20 24 24 H 0.97002 * 126.04123 * 180.02562 * 23 22 21 25 25 C 1.53777 * 113.61661 * 56.28198 * 14 13 11 26 26 C 1.53781 * 87.08156 * 89.11380 * 25 14 13 27 27 C 1.53777 * 113.61308 * 153.77961 * 14 13 11 28 28 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47270 * 60.00129 * 10 9 7 30 30 H 1.08999 * 109.46968 * 300.00080 * 10 9 7 31 31 H 0.96999 * 119.99750 * 4.71550 * 13 11 10 32 32 H 1.09000 * 109.47004 * 71.27172 * 15 14 13 33 33 H 1.09004 * 109.47493 * 191.27400 * 15 14 13 34 34 H 0.97009 * 119.99975 * 354.96285 * 16 15 14 35 35 H 1.07996 * 126.81970 * 0.02562 * 20 19 17 36 36 H 1.08997 * 113.61148 * 334.57058 * 25 14 13 37 37 H 1.08991 * 113.69342 * 203.67338 * 25 14 13 38 38 H 1.09000 * 113.61819 * 139.98002 * 26 25 14 39 39 H 1.08998 * 113.61439 * 270.88780 * 26 25 14 40 40 H 1.08998 * 113.61935 * 156.33215 * 27 14 13 41 41 H 1.09004 * 113.61421 * 25.43264 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4947 0.0026 14 6 7.4866 -4.7372 0.1079 15 6 8.2375 -4.4366 -1.1908 16 7 7.5510 -5.0818 -2.3126 17 6 7.9760 -4.8712 -3.5741 18 8 8.9294 -4.1449 -3.7812 19 6 7.2857 -5.5192 -4.7016 20 6 7.5867 -5.4045 -6.0332 21 7 6.7044 -6.1628 -6.6845 22 7 5.9034 -6.7080 -5.8402 23 7 6.2040 -6.3584 -4.6386 24 1 5.7462 -6.6395 -3.8309 25 6 8.1290 -4.1018 1.3522 26 6 7.8009 -5.4091 2.0925 27 6 7.8382 -6.1031 0.7207 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4314 -0.8892 30 1 3.6432 -3.4318 0.8906 31 1 5.4318 -5.2425 -0.0668 32 1 8.2655 -3.3591 -1.3532 33 1 9.2555 -4.8198 -1.1190 34 1 6.7903 -5.6608 -2.1474 35 1 8.3821 -4.8181 -6.4687 36 1 7.5845 -3.2370 1.7312 37 1 9.1978 -3.9161 1.2468 38 1 8.5896 -5.7374 2.7695 39 1 6.8147 -5.4123 2.5567 40 1 8.8275 -6.4654 0.4414 41 1 7.0589 -6.8540 0.5899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001063581939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:08 Heat of formation + Delta-G solvation = 47.837083 kcal Electronic energy + Delta-G solvation = -26751.336433 eV Core-core repulsion = 22795.713546 eV Total energy + Delta-G solvation = -3955.622886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.72541 -40.99456 -39.58455 -38.05980 -35.13880 -33.83300 -33.31495 -32.51493 -31.85029 -29.66063 -28.27219 -26.19070 -25.69865 -24.80398 -23.50475 -22.73802 -21.50853 -20.95673 -19.91201 -19.32085 -17.99292 -17.36205 -16.79208 -16.63999 -16.57529 -15.96859 -15.70690 -15.29997 -15.04920 -14.79449 -14.72011 -14.66182 -14.19012 -13.69364 -13.64005 -13.10612 -12.86911 -12.72522 -12.58401 -12.40044 -11.98712 -11.67736 -11.36068 -11.28913 -11.23400 -11.15280 -11.07151 -10.74730 -10.70233 -10.60188 -9.95890 -9.92826 -9.70473 -9.45688 -9.24512 -9.07324 -8.60420 -7.01473 -6.36390 -4.09348 0.48900 1.92811 2.00329 2.42445 2.62365 2.69968 2.75477 3.11917 3.28010 3.44081 3.51152 3.88521 3.95707 4.17606 4.23461 4.26181 4.36782 4.47984 4.59129 4.63081 4.76456 4.89678 5.02913 5.13534 5.22643 5.23268 5.33552 5.51337 5.57628 5.58540 5.59912 5.69597 5.78478 5.85065 5.90078 5.93900 6.13875 6.41029 6.84454 7.33951 7.57246 7.86309 7.86758 8.28074 8.33096 9.09626 10.72779 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009274 B = 0.003427 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.563996 B = 8167.377383 C =10092.141552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.088 0.912 9 S -0.137 6.137 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.504 6.504 13 N -0.721 5.721 14 C 0.139 3.861 15 C 0.122 3.878 16 N -0.715 5.715 17 C 0.595 3.405 18 O -0.510 6.510 19 C -0.066 4.066 20 C 0.035 3.965 21 N -0.269 5.269 22 N -0.043 5.043 23 N -0.374 5.374 24 H 0.450 0.550 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.272 0.728 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.393 0.607 35 H 0.205 0.795 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.738 -17.766 -0.522 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.672 4.672 8 H 0.106 0.894 9 S 0.089 5.911 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.377 6.377 13 N -0.377 5.377 14 C 0.052 3.948 15 C -0.002 4.002 16 N -0.366 5.366 17 C 0.378 3.622 18 O -0.383 6.383 19 C -0.200 4.200 20 C -0.124 4.124 21 N -0.134 5.134 22 N -0.026 5.026 23 N -0.101 5.101 24 H 0.296 0.704 25 C -0.171 4.171 26 C -0.176 4.176 27 C -0.175 4.175 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.226 0.774 35 H 0.222 0.778 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.694 -16.301 -1.624 24.113 hybrid contribution -1.286 -0.513 1.231 1.852 sum 16.408 -16.814 -0.393 23.497 Atomic orbital electron populations 1.69928 1.05933 1.27877 1.47762 1.24703 0.94442 0.98969 0.93067 0.86750 0.81867 0.83314 0.80012 1.19162 1.19835 1.15937 1.22292 0.88204 0.97521 1.59183 0.89434 1.84848 1.09375 0.99469 1.97420 1.23286 0.93769 1.04887 1.05667 1.20305 0.90577 0.82107 0.74999 1.90718 1.58539 1.42011 1.46400 1.45701 1.05866 1.08312 1.77785 1.21517 0.81875 0.97730 0.93709 1.21841 0.95176 0.99967 0.83230 1.45675 1.34782 1.50342 1.05847 1.16722 0.83389 0.80885 0.81173 1.90898 1.26841 1.36537 1.83985 1.22394 0.95810 1.03622 0.98194 1.23949 1.00390 0.99484 0.88604 1.75030 1.03664 1.09773 1.24930 1.78248 1.19537 1.18465 0.86321 1.45587 1.22079 1.32179 1.10284 0.70369 1.23150 1.01462 0.98590 0.93900 1.22828 1.02496 0.96260 0.96005 1.23289 1.02649 0.94798 0.96763 0.91847 0.88784 0.88414 0.76602 0.89173 0.90126 0.77373 0.77788 0.89369 0.88941 0.90936 0.89827 0.88531 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.97 55.49 0.78 -25.26 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.37 27.74 -169.99 -4.72 16.66 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 7 C -0.52 -14.62 10.04 30.94 0.31 -14.30 16 8 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 9 S -0.14 -3.30 18.55 -107.50 -1.99 -5.29 16 10 C -0.13 -2.15 6.16 36.01 0.22 -1.93 16 11 C 0.53 7.88 7.36 -10.98 -0.08 7.79 16 12 O -0.50 -9.38 13.87 5.56 0.08 -9.30 16 13 N -0.72 -6.50 4.52 -46.86 -0.21 -6.71 16 14 C 0.14 1.10 0.64 -131.01 -0.08 1.02 16 15 C 0.12 1.11 5.09 -4.05 -0.02 1.09 16 16 N -0.72 -5.62 5.38 -61.45 -0.33 -5.95 16 17 C 0.60 6.17 7.81 -12.60 -0.10 6.07 16 18 O -0.51 -7.13 16.92 5.26 0.09 -7.04 16 19 C -0.07 -0.61 7.17 -82.33 -0.59 -1.20 16 20 C 0.04 0.36 11.87 -17.35 -0.21 0.15 16 21 N -0.27 -3.14 12.35 30.47 0.38 -2.77 16 22 N -0.04 -0.46 13.35 60.35 0.81 0.35 16 23 N -0.37 -2.77 6.97 33.31 0.23 -2.54 16 24 H 0.45 1.51 8.32 -190.33 -1.58 -0.07 16 25 C -0.13 -1.19 6.88 -25.92 -0.18 -1.37 16 26 C -0.14 -0.91 7.99 -25.92 -0.21 -1.12 16 27 C -0.14 -0.68 7.39 -25.92 -0.19 -0.88 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 31 H 0.40 2.33 8.74 -40.82 -0.36 1.97 16 32 H 0.09 1.18 7.63 -51.93 -0.40 0.78 16 33 H 0.08 0.64 7.94 -51.93 -0.41 0.23 16 34 H 0.39 1.91 7.39 -40.82 -0.30 1.61 16 35 H 0.21 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.09 1.09 6.75 -51.93 -0.35 0.74 16 37 H 0.09 0.73 8.10 -51.93 -0.42 0.30 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.40 7.96 -51.93 -0.41 -0.02 16 41 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -36.97 366.38 -6.94 -43.91 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.35 Total: 0.39 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.22 Total: -1.98 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 1.65 Total: -42.87 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.17 Total: -16.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.66 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.99 Total: -5.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.97 -6.94 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001063581939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.751 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds