Wall clock time and date at job start Tue Mar 31 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00100 * 2 1 4 4 H 1.48501 * 109.46984 * 269.99681 * 3 2 1 5 5 H 1.48497 * 109.47015 * 29.99539 * 3 2 1 6 6 H 1.48496 * 109.46901 * 149.99760 * 3 2 1 7 7 C 1.38800 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00119 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99856 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46852 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00186 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00114 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00058 * 184.70772 * 13 11 10 15 15 C 1.52996 * 112.90828 * 285.02912 * 14 13 11 16 16 N 1.46497 * 109.47507 * 311.27143 * 15 14 13 17 17 C 1.34776 * 120.00540 * 174.96127 * 16 15 14 18 18 O 1.21623 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.47236 * 120.00456 * 180.02562 * 17 16 15 20 20 C 1.37003 * 127.18762 * 179.68148 * 19 17 16 21 21 N 1.33329 * 106.36692 * 179.90167 * 20 19 17 22 22 N 1.28512 * 109.43924 * 0.37409 * 21 20 19 23 23 N 1.28708 * 110.64162 * 359.76029 * 22 21 20 24 24 H 0.97002 * 126.04123 * 180.02562 * 23 22 21 25 25 C 1.53777 * 113.61661 * 56.28198 * 14 13 11 26 26 C 1.53781 * 87.08156 * 89.11380 * 25 14 13 27 27 C 1.53777 * 113.61308 * 153.77961 * 14 13 11 28 28 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47270 * 60.00129 * 10 9 7 30 30 H 1.08999 * 109.46968 * 300.00080 * 10 9 7 31 31 H 0.96999 * 119.99750 * 4.71550 * 13 11 10 32 32 H 1.09000 * 109.47004 * 71.27172 * 15 14 13 33 33 H 1.09004 * 109.47493 * 191.27400 * 15 14 13 34 34 H 0.97009 * 119.99975 * 354.96285 * 16 15 14 35 35 H 1.07996 * 126.81970 * 0.02562 * 20 19 17 36 36 H 1.08997 * 113.61148 * 334.57058 * 25 14 13 37 37 H 1.08991 * 113.69342 * 203.67338 * 25 14 13 38 38 H 1.09000 * 113.61819 * 139.98002 * 26 25 14 39 39 H 1.08998 * 113.61439 * 270.88780 * 26 25 14 40 40 H 1.08998 * 113.61935 * 156.33215 * 27 14 13 41 41 H 1.09004 * 113.61421 * 25.43264 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4947 0.0026 14 6 7.4866 -4.7372 0.1079 15 6 8.2375 -4.4366 -1.1908 16 7 7.5510 -5.0818 -2.3126 17 6 7.9760 -4.8712 -3.5741 18 8 8.9294 -4.1449 -3.7812 19 6 7.2857 -5.5192 -4.7016 20 6 7.5867 -5.4045 -6.0332 21 7 6.7044 -6.1628 -6.6845 22 7 5.9034 -6.7080 -5.8402 23 7 6.2040 -6.3584 -4.6386 24 1 5.7462 -6.6395 -3.8309 25 6 8.1290 -4.1018 1.3522 26 6 7.8009 -5.4091 2.0925 27 6 7.8382 -6.1031 0.7207 28 1 -0.4850 0.8401 -0.0004 29 1 3.6440 -3.4314 -0.8892 30 1 3.6432 -3.4318 0.8906 31 1 5.4318 -5.2425 -0.0668 32 1 8.2655 -3.3591 -1.3532 33 1 9.2555 -4.8198 -1.1190 34 1 6.7903 -5.6608 -2.1474 35 1 8.3821 -4.8181 -6.4687 36 1 7.5845 -3.2370 1.7312 37 1 9.1978 -3.9161 1.2468 38 1 8.5896 -5.7374 2.7695 39 1 6.8147 -5.4123 2.5567 40 1 8.8275 -6.4654 0.4414 41 1 7.0589 -6.8540 0.5899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001063581939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:08 Heat of formation + Delta-G solvation = 17.134396 kcal Electronic energy + Delta-G solvation = -26752.667801 eV Core-core repulsion = 22795.713546 eV Total energy + Delta-G solvation = -3956.954255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.48023 -41.82616 -40.48568 -39.06414 -35.93789 -34.70195 -34.59418 -34.32247 -32.62973 -30.86690 -29.13922 -27.86844 -26.75929 -25.56266 -24.25601 -23.50891 -22.35036 -21.87301 -20.67660 -20.14728 -19.87462 -18.12327 -17.89562 -17.53225 -17.40315 -17.13115 -16.83977 -16.64102 -16.20214 -15.89199 -15.68500 -15.42330 -15.30170 -15.04287 -14.82082 -14.51295 -14.02998 -13.64458 -13.38399 -13.36802 -13.23559 -13.05401 -12.77279 -12.60554 -12.45631 -11.95787 -11.92831 -11.89543 -11.82925 -11.49159 -11.37496 -11.19905 -10.85551 -10.74282 -10.54118 -10.28039 -10.14514 -9.00961 -8.54205 -6.24189 -0.26816 0.96818 1.12790 1.28618 1.34721 1.43595 1.51661 1.56270 1.76183 1.90318 2.15982 2.22255 2.69253 2.84713 3.20309 3.34096 3.50973 3.62129 3.66908 3.84220 3.88284 3.96904 4.02409 4.22122 4.38046 4.44707 4.47281 4.71610 4.82713 4.86653 4.88148 4.99903 5.07918 5.13088 5.17252 5.31225 5.60234 5.63410 5.68116 6.09030 6.16249 6.45127 6.82346 6.91787 7.10044 7.20951 8.58103 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009274 B = 0.003427 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.563996 B = 8167.377383 C =10092.141552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.178 6.178 10 C -0.112 4.112 11 C 0.540 3.460 12 O -0.547 6.547 13 N -0.694 5.694 14 C 0.136 3.864 15 C 0.127 3.873 16 N -0.699 5.699 17 C 0.598 3.402 18 O -0.550 6.550 19 C -0.064 4.064 20 C 0.027 3.973 21 N -0.297 5.297 22 N -0.056 5.056 23 N -0.348 5.348 24 H 0.468 0.532 25 C -0.145 4.145 26 C -0.134 4.134 27 C -0.113 4.113 28 H 0.277 0.723 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.420 0.580 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.410 0.590 35 H 0.217 0.783 36 H 0.048 0.952 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.869 -20.179 0.112 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.263 4.263 11 C 0.325 3.675 12 O -0.423 6.423 13 N -0.349 5.349 14 C 0.048 3.952 15 C 0.002 3.998 16 N -0.350 5.350 17 C 0.382 3.618 18 O -0.426 6.426 19 C -0.199 4.199 20 C -0.133 4.133 21 N -0.161 5.161 22 N -0.038 5.038 23 N -0.078 5.078 24 H 0.318 0.682 25 C -0.183 4.183 26 C -0.171 4.171 27 C -0.150 4.150 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.247 0.753 35 H 0.234 0.766 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.135 0.865 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.772 -18.809 -0.958 26.591 hybrid contribution -1.597 0.101 1.083 1.932 sum 17.175 -18.708 0.125 25.397 Atomic orbital electron populations 1.70005 1.07275 1.28979 1.49197 1.25514 0.95196 1.02099 0.92977 0.85919 0.80774 0.79949 0.80058 1.19042 1.18408 1.16021 1.22463 0.90349 0.96607 1.58105 0.91819 1.84807 1.06298 1.06493 1.97577 1.23281 0.96216 0.99407 1.07387 1.19879 0.89066 0.83486 0.75074 1.90723 1.59008 1.43830 1.48764 1.45362 1.07155 1.06884 1.75501 1.21707 0.80338 1.00277 0.92837 1.21754 0.96575 0.97676 0.83801 1.45514 1.34900 1.49779 1.04845 1.16792 0.82867 0.80311 0.81830 1.90886 1.28717 1.38386 1.84595 1.22180 0.96204 1.03913 0.97573 1.24271 1.00529 0.99375 0.89111 1.75021 1.04480 1.10779 1.25821 1.78184 1.19679 1.18835 0.87119 1.45530 1.21124 1.30783 1.10392 0.68157 1.23231 1.01613 0.98436 0.95070 1.22810 1.02598 0.94627 0.97081 1.23261 1.04586 0.93065 0.94097 0.91401 0.86940 0.86805 0.74110 0.93407 0.88382 0.75349 0.76650 0.93318 0.88133 0.89587 0.90442 0.86537 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.00 13.97 21.65 0.30 -54.70 16 2 C 0.05 2.75 5.50 84.86 0.47 3.21 16 3 Si 0.91 44.49 27.74 68.60 1.90 46.39 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 7 C -0.53 -29.73 10.04 67.95 0.68 -29.05 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 S -0.18 -8.56 18.55 -56.49 -1.05 -9.61 16 10 C -0.11 -3.68 6.16 71.24 0.44 -3.24 16 11 C 0.54 15.18 7.36 87.66 0.65 15.83 16 12 O -0.55 -20.42 13.87 -3.03 -0.04 -20.46 16 13 N -0.69 -10.53 4.52 -420.56 -1.90 -12.43 16 14 C 0.14 1.77 0.64 4.13 0.00 1.78 16 15 C 0.13 2.07 5.09 86.38 0.44 2.51 16 16 N -0.70 -9.18 5.38 -466.57 -2.51 -11.69 16 17 C 0.60 11.47 7.81 86.61 0.68 12.15 16 18 O -0.55 -15.13 16.92 -4.10 -0.07 -15.20 16 19 C -0.06 -1.07 7.17 40.41 0.29 -0.78 16 20 C 0.03 0.53 11.87 84.18 1.00 1.52 16 21 N -0.30 -6.68 12.35 -57.50 -0.71 -7.39 16 22 N -0.06 -1.09 13.35 37.02 0.49 -0.59 16 23 N -0.35 -4.34 6.97 -48.52 -0.34 -4.67 16 24 H 0.47 1.58 8.32 -219.90 -1.83 -0.25 16 25 C -0.14 -2.39 6.88 31.12 0.21 -2.17 16 26 C -0.13 -1.31 7.99 31.12 0.25 -1.07 16 27 C -0.11 -0.57 7.39 31.12 0.23 -0.34 16 28 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.11 3.31 8.14 -2.40 -0.02 3.29 16 30 H 0.11 3.41 8.14 -2.40 -0.02 3.39 16 31 H 0.42 3.04 8.74 -92.71 -0.81 2.23 16 32 H 0.05 1.25 7.63 -2.39 -0.02 1.23 16 33 H 0.10 1.31 7.94 -2.39 -0.02 1.29 16 34 H 0.41 2.40 7.39 -92.70 -0.68 1.72 16 35 H 0.22 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.05 1.22 6.75 -2.39 -0.02 1.20 16 37 H 0.10 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.12 0.29 7.96 -2.39 -0.02 0.27 16 41 H 0.10 0.07 8.12 -2.38 -0.02 0.05 16 Total: -1.00 -84.23 366.38 -0.83 -85.06 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.25 Total: 4.95 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.33 Total: 0.35 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -4.66 Total: -91.48 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.11 Total: -35.66 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.05 Total: -9.61 kcal Total: -84.23 -0.83 -85.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001063581939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.193 kcal (2) G-P(sol) polarization free energy of solvation -84.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds