Wall clock time and date at job start Tue Mar 31 2020 22:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47241 * 300.00152 * 3 2 1 6 6 H 1.48502 * 109.47005 * 60.00381 * 3 2 1 7 7 C 1.38805 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99525 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99613 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21555 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.47873 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.34550 * 126.04903 * 179.97438 * 19 17 16 21 21 C 1.30873 * 107.26797 * 179.97438 * 20 19 17 22 22 N 1.34587 * 107.62491 * 0.02562 * 21 20 19 23 23 H 0.97004 * 125.74677 * 180.02562 * 22 21 20 24 24 N 1.28845 * 108.50341 * 359.72874 * 22 21 20 25 25 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 26 26 C 1.53782 * 87.08260 * 270.88377 * 25 14 13 27 27 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 28 28 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47754 * 299.99498 * 10 9 7 30 30 H 1.09000 * 109.47201 * 60.00124 * 10 9 7 31 31 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 32 32 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 33 33 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 34 34 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 35 35 H 1.07998 * 126.19065 * 179.97438 * 21 20 19 36 36 H 1.09000 * 113.61589 * 25.43393 * 25 14 13 37 37 H 1.09000 * 113.61764 * 156.33151 * 25 14 13 38 38 H 1.08996 * 113.61346 * 220.02295 * 26 25 14 39 39 H 1.08999 * 113.61492 * 89.11500 * 26 25 14 40 40 H 1.08995 * 113.61919 * 203.66926 * 27 14 13 41 41 H 1.09010 * 113.61004 * 334.56873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7281 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3432 -0.0033 14 6 2.3343 -7.7120 0.1083 15 6 1.6799 -7.9938 1.4624 16 7 2.5640 -7.5353 2.5369 17 6 2.1503 -7.5881 3.8185 18 8 1.0436 -8.0155 4.0828 19 6 3.0429 -7.1259 4.9031 20 7 2.7560 -7.1234 6.2176 21 6 3.8003 -6.6418 6.8423 22 7 4.7298 -6.3470 5.9147 23 1 5.6078 -5.9740 6.0908 24 7 4.2595 -6.6496 4.7539 25 6 3.3488 -8.7843 -0.3226 26 6 2.7851 -8.6335 -1.7454 27 6 1.4793 -8.1508 -1.0922 28 1 -0.4851 0.8400 0.0004 29 1 3.1237 -3.7310 -0.8925 30 1 3.1251 -3.7317 0.8875 31 1 3.7982 -6.1856 -0.0782 32 1 0.7290 -7.4644 1.5235 33 1 1.5068 -9.0648 1.5664 34 1 3.4471 -7.1940 2.3259 35 1 3.8982 -6.5047 7.9091 36 1 4.3871 -8.4660 -0.2283 37 1 3.1635 -9.7634 0.1191 38 1 2.6835 -9.5795 -2.2773 39 1 3.2877 -7.8670 -2.3353 40 1 0.7828 -8.9567 -0.8610 41 1 1.0082 -7.3210 -1.6193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001063999566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:48 Heat of formation + Delta-G solvation = 42.508772 kcal Electronic energy + Delta-G solvation = -26776.918231 eV Core-core repulsion = 22821.064291 eV Total energy + Delta-G solvation = -3955.853939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.71878 -40.68856 -39.14745 -37.79688 -34.61730 -33.65909 -33.02870 -32.43540 -31.82708 -29.36028 -28.04218 -25.95709 -25.50322 -24.75073 -23.26195 -22.53016 -20.93556 -20.43232 -19.36641 -19.03282 -17.87525 -17.65374 -16.62662 -16.41592 -16.36544 -15.62880 -15.37753 -15.05028 -14.92065 -14.81511 -14.54934 -14.28238 -13.96657 -13.47467 -13.29691 -12.88182 -12.53387 -12.49957 -12.46586 -12.17476 -11.70341 -11.09779 -11.07785 -11.02921 -10.98751 -10.97559 -10.77122 -10.75062 -10.49973 -10.26963 -10.01021 -9.81735 -9.39618 -9.08801 -9.06918 -8.93122 -8.23135 -6.49880 -6.22444 -3.92688 1.11400 1.90698 2.31221 2.75586 2.98854 3.06708 3.20032 3.25897 3.28192 3.30140 3.64797 4.02323 4.17975 4.19366 4.22901 4.44343 4.54938 4.66424 4.72433 5.04106 5.12759 5.26384 5.42705 5.46692 5.53765 5.66857 5.67290 5.69166 5.84664 5.86264 5.93559 5.97223 6.07810 6.10498 6.12642 6.28071 6.39491 6.69466 7.27441 7.58593 7.65694 7.73348 8.09244 8.34264 8.59863 9.22848 10.85016 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008344 B = 0.003651 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.932415 B = 7668.322513 C =10048.353207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.505 6.505 13 N -0.721 5.721 14 C 0.143 3.857 15 C 0.122 3.878 16 N -0.704 5.704 17 C 0.612 3.388 18 O -0.508 6.508 19 C 0.156 3.844 20 N -0.461 5.461 21 C 0.196 3.804 22 N -0.398 5.398 23 H 0.452 0.548 24 N -0.276 5.276 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.133 4.133 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.405 0.595 35 H 0.231 0.769 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 -18.143 6.647 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.377 6.377 13 N -0.376 5.376 14 C 0.055 3.945 15 C -0.002 4.002 16 N -0.356 5.356 17 C 0.393 3.607 18 O -0.378 6.378 19 C -0.125 4.125 20 N -0.185 5.185 21 C -0.102 4.102 22 N -0.121 5.121 23 H 0.298 0.702 24 N -0.118 5.118 25 C -0.174 4.174 26 C -0.176 4.176 27 C -0.172 4.172 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.210 -18.804 6.331 23.297 hybrid contribution 3.607 2.041 0.419 4.165 sum 15.816 -16.763 6.750 24.015 Atomic orbital electron populations 1.70025 1.05939 1.27355 1.46859 1.24987 0.95004 0.98996 0.94561 0.86133 0.79542 0.81978 0.77930 1.19671 1.20525 1.20580 1.22903 0.94892 0.91725 1.58901 0.90968 1.85444 1.04686 0.96222 1.96683 1.23531 1.06657 0.95454 1.04740 1.20285 0.86596 0.86002 0.74907 1.90710 1.15197 1.85383 1.46444 1.45727 1.10065 1.04149 1.77691 1.21468 0.96497 0.82787 0.93748 1.21788 0.94700 1.00004 0.83736 1.45507 1.20012 1.65186 1.04921 1.16261 0.84750 0.78715 0.80945 1.90849 1.19316 1.44991 1.82692 1.23862 0.91044 1.04764 0.92847 1.71318 1.25153 1.18564 1.03506 1.26763 0.85176 0.99048 0.99178 1.45114 1.17579 1.45636 1.03780 0.70159 1.74236 1.12565 1.17344 1.07634 1.23281 0.98496 0.98508 0.97161 1.22826 0.97274 1.01612 0.95884 1.23176 0.96634 1.01832 0.95574 0.92216 0.89348 0.89417 0.76606 0.89163 0.90378 0.75978 0.75255 0.90829 0.88585 0.91103 0.89968 0.89089 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.54 9.49 7.40 -10.98 -0.08 9.41 16 12 O -0.50 -10.93 13.86 5.56 0.08 -10.85 16 13 N -0.72 -8.71 4.53 -46.86 -0.21 -8.92 16 14 C 0.14 1.54 0.63 -131.01 -0.08 1.46 16 15 C 0.12 1.56 4.93 -4.03 -0.02 1.54 16 16 N -0.70 -9.00 5.38 -61.24 -0.33 -9.33 16 17 C 0.61 9.64 7.83 -12.32 -0.10 9.54 16 18 O -0.51 -9.80 17.09 5.32 0.09 -9.71 16 19 C 0.16 2.18 7.96 -156.35 -1.24 0.94 16 20 N -0.46 -6.18 11.41 -12.36 -0.14 -6.32 16 21 C 0.20 1.47 13.14 -90.48 -1.19 0.28 16 22 N -0.40 -2.68 6.93 29.57 0.20 -2.48 16 23 H 0.45 0.97 8.96 -190.21 -1.71 -0.74 16 24 N -0.28 -3.00 11.98 32.08 0.38 -2.62 16 25 C -0.14 -1.01 7.37 -25.92 -0.19 -1.20 16 26 C -0.14 -1.14 7.99 -25.92 -0.21 -1.35 16 27 C -0.13 -1.47 6.95 -25.92 -0.18 -1.65 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.40 3.64 8.67 -40.82 -0.35 3.28 16 32 H 0.09 1.51 7.34 -51.93 -0.38 1.13 16 33 H 0.08 0.88 7.94 -51.93 -0.41 0.46 16 34 H 0.41 4.40 7.81 -40.82 -0.32 4.08 16 35 H 0.23 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.10 0.62 7.96 -51.93 -0.41 0.21 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.09 1.21 7.19 -51.92 -0.37 0.84 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -40.64 370.02 -10.18 -50.82 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.46 Total: 3.51 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.87 Total: 3.24 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.64 Total: -55.20 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -40.64 -10.18 -50.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001063999566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.326 kcal (2) G-P(sol) polarization free energy of solvation -40.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds