Wall clock time and date at job start Tue Mar 31 2020 22:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47241 * 300.00152 * 3 2 1 6 6 H 1.48502 * 109.47005 * 60.00381 * 3 2 1 7 7 C 1.38805 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99525 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99613 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00129 * 174.97223 * 13 11 10 15 15 C 1.53010 * 112.84911 * 294.02337 * 14 13 11 16 16 N 1.46504 * 109.47083 * 311.52266 * 15 14 13 17 17 C 1.34770 * 119.99770 * 174.96292 * 16 15 14 18 18 O 1.21555 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.47873 * 119.99990 * 179.97438 * 17 16 15 20 20 N 1.34550 * 126.04903 * 179.97438 * 19 17 16 21 21 C 1.30873 * 107.26797 * 179.97438 * 20 19 17 22 22 N 1.34587 * 107.62491 * 0.02562 * 21 20 19 23 23 H 0.97004 * 125.74677 * 180.02562 * 22 21 20 24 24 N 1.28845 * 108.50341 * 359.72874 * 22 21 20 25 25 C 1.53775 * 113.61642 * 162.71865 * 14 13 11 26 26 C 1.53782 * 87.08260 * 270.88377 * 25 14 13 27 27 C 1.53778 * 113.61810 * 65.22018 * 14 13 11 28 28 H 0.96998 * 120.00434 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47754 * 299.99498 * 10 9 7 30 30 H 1.09000 * 109.47201 * 60.00124 * 10 9 7 31 31 H 0.97000 * 119.99644 * 354.97698 * 13 11 10 32 32 H 1.09002 * 109.46765 * 71.51831 * 15 14 13 33 33 H 1.08994 * 109.47258 * 191.52127 * 15 14 13 34 34 H 0.96999 * 119.99881 * 354.95553 * 16 15 14 35 35 H 1.07998 * 126.19065 * 179.97438 * 21 20 19 36 36 H 1.09000 * 113.61589 * 25.43393 * 25 14 13 37 37 H 1.09000 * 113.61764 * 156.33151 * 25 14 13 38 38 H 1.08996 * 113.61346 * 220.02295 * 26 25 14 39 39 H 1.08999 * 113.61492 * 89.11500 * 26 25 14 40 40 H 1.08995 * 113.61919 * 203.66926 * 27 14 13 41 41 H 1.09010 * 113.61004 * 334.56873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7281 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0017 12 8 0.7910 -5.5023 -0.0009 13 7 2.8441 -6.3432 -0.0033 14 6 2.3343 -7.7120 0.1083 15 6 1.6799 -7.9938 1.4624 16 7 2.5640 -7.5353 2.5369 17 6 2.1503 -7.5881 3.8185 18 8 1.0436 -8.0155 4.0828 19 6 3.0429 -7.1259 4.9031 20 7 2.7560 -7.1234 6.2176 21 6 3.8003 -6.6418 6.8423 22 7 4.7298 -6.3470 5.9147 23 1 5.6078 -5.9740 6.0908 24 7 4.2595 -6.6496 4.7539 25 6 3.3488 -8.7843 -0.3226 26 6 2.7851 -8.6335 -1.7454 27 6 1.4793 -8.1508 -1.0922 28 1 -0.4851 0.8400 0.0004 29 1 3.1237 -3.7310 -0.8925 30 1 3.1251 -3.7317 0.8875 31 1 3.7982 -6.1856 -0.0782 32 1 0.7290 -7.4644 1.5235 33 1 1.5068 -9.0648 1.5664 34 1 3.4471 -7.1940 2.3259 35 1 3.8982 -6.5047 7.9091 36 1 4.3871 -8.4660 -0.2283 37 1 3.1635 -9.7634 0.1191 38 1 2.6835 -9.5795 -2.2773 39 1 3.2877 -7.8670 -2.3353 40 1 0.7828 -8.9567 -0.8610 41 1 1.0082 -7.3210 -1.6193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001063999566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:47 Heat of formation + Delta-G solvation = 9.728773 kcal Electronic energy + Delta-G solvation = -26778.339678 eV Core-core repulsion = 22821.064291 eV Total energy + Delta-G solvation = -3957.275387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.48548 -41.76257 -40.36201 -39.03650 -35.73175 -34.60577 -34.47659 -34.29126 -32.64258 -30.77646 -29.16824 -27.67974 -26.72713 -25.68260 -23.99736 -23.47472 -22.06207 -21.57523 -20.29036 -19.91072 -19.81249 -18.61203 -17.84025 -17.47092 -17.40612 -16.89892 -16.75030 -16.52046 -16.19012 -15.88716 -15.85939 -15.51376 -15.13779 -14.85872 -14.65690 -14.37477 -13.90439 -13.59697 -13.26561 -13.22148 -13.17301 -12.93720 -12.73083 -12.59027 -11.92086 -11.84827 -11.81178 -11.70819 -11.63797 -11.42662 -11.35431 -11.17408 -10.83050 -10.77608 -10.27311 -10.21698 -10.09255 -8.67639 -8.36086 -6.14062 0.21670 1.13459 1.24777 1.39681 1.44706 1.54564 1.59738 1.63118 1.98197 2.21215 2.22264 2.27025 2.98240 3.15069 3.29323 3.39865 3.50468 3.66741 3.68418 3.91360 4.01709 4.04453 4.28915 4.42144 4.45232 4.49657 4.70608 4.83459 4.85336 4.88318 5.06540 5.12070 5.14135 5.19721 5.23673 5.35190 5.40073 5.66939 5.91825 6.18238 6.26655 6.52001 6.90131 7.05106 7.05148 7.28377 8.73448 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008344 B = 0.003651 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.932415 B = 7668.322513 C =10048.353207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.128 4.128 11 C 0.538 3.462 12 O -0.551 6.551 13 N -0.693 5.693 14 C 0.135 3.865 15 C 0.125 3.875 16 N -0.688 5.688 17 C 0.604 3.396 18 O -0.559 6.559 19 C 0.121 3.879 20 N -0.517 5.517 21 C 0.219 3.781 22 N -0.377 5.377 23 H 0.474 0.526 24 N -0.271 5.271 25 C -0.113 4.113 26 C -0.127 4.127 27 C -0.144 4.144 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.419 0.581 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.416 0.584 35 H 0.285 0.715 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.986 -18.536 7.178 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.428 6.428 13 N -0.349 5.349 14 C 0.047 3.953 15 C 0.000 4.000 16 N -0.340 5.340 17 C 0.387 3.613 18 O -0.434 6.434 19 C -0.158 4.158 20 N -0.243 5.243 21 C -0.078 4.078 22 N -0.103 5.103 23 H 0.326 0.674 24 N -0.115 5.115 25 C -0.150 4.150 26 C -0.164 4.164 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.253 0.747 35 H 0.300 0.700 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.909 -19.212 6.845 26.493 hybrid contribution 2.258 2.085 0.322 3.090 sum 19.167 -17.127 7.167 26.684 Atomic orbital electron populations 1.70199 1.08071 1.28531 1.48117 1.26142 0.95924 1.03374 0.93742 0.84907 0.78677 0.76296 0.78070 1.17819 1.19871 1.20050 1.23234 0.95312 0.91992 1.58730 0.89887 1.85666 1.10611 0.99333 1.97021 1.23361 1.03470 0.94598 1.06526 1.20006 0.86356 0.86399 0.74896 1.90712 1.17325 1.85871 1.48890 1.45386 1.10391 1.03669 1.75415 1.21722 0.98450 0.82646 0.92436 1.21756 0.93050 1.00323 0.84847 1.45407 1.20194 1.64269 1.04159 1.16691 0.84510 0.78041 0.82056 1.90801 1.21518 1.47518 1.83602 1.23498 0.92054 1.07424 0.92839 1.71240 1.28267 1.21031 1.03742 1.27681 0.83306 0.95962 1.00848 1.45154 1.18363 1.44167 1.02595 0.67448 1.74120 1.11259 1.16644 1.09451 1.23259 0.98612 0.97556 0.95607 1.22789 0.94805 1.02323 0.96519 1.23259 0.98196 1.01011 0.95863 0.92040 0.87092 0.87757 0.74246 0.93972 0.88622 0.74673 0.70001 0.88211 0.86699 0.89169 0.90048 0.88308 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.26 9.50 67.96 0.65 -30.61 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.54 19.30 7.40 87.66 0.65 19.95 16 12 O -0.55 -25.31 13.86 -3.03 -0.04 -25.35 16 13 N -0.69 -15.88 4.53 -420.54 -1.91 -17.78 16 14 C 0.13 2.77 0.63 4.13 0.00 2.77 16 15 C 0.12 3.27 4.93 86.38 0.43 3.69 16 16 N -0.69 -17.66 5.38 -465.93 -2.51 -20.16 16 17 C 0.60 19.79 7.83 86.80 0.68 20.47 16 18 O -0.56 -23.12 17.09 -3.89 -0.07 -23.19 16 19 C 0.12 3.40 7.96 137.13 1.09 4.49 16 20 N -0.52 -13.62 11.41 -193.02 -2.20 -15.82 16 21 C 0.22 2.68 13.14 180.30 2.37 5.05 16 22 N -0.38 -3.96 6.93 -60.37 -0.42 -4.37 16 23 H 0.47 0.21 8.96 -219.79 -1.97 -1.76 16 24 N -0.27 -5.42 11.98 -52.43 -0.63 -6.05 16 25 C -0.11 -1.25 7.37 31.12 0.23 -1.02 16 26 C -0.13 -1.74 7.99 31.12 0.25 -1.49 16 27 C -0.14 -3.14 6.95 31.12 0.22 -2.93 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 30 H 0.10 3.74 8.14 -2.40 -0.02 3.72 16 31 H 0.42 6.33 8.67 -92.71 -0.80 5.53 16 32 H 0.04 1.54 7.34 -2.39 -0.02 1.52 16 33 H 0.10 2.15 7.94 -2.39 -0.02 2.13 16 34 H 0.42 8.49 7.81 -92.71 -0.72 7.76 16 35 H 0.28 -0.17 8.06 -2.91 -0.02 -0.19 16 36 H 0.10 0.68 8.09 -2.39 -0.02 0.66 16 37 H 0.11 0.97 7.96 -2.39 -0.02 0.95 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 41 H 0.05 1.41 7.19 -2.38 -0.02 1.40 16 Total: -1.00 -97.54 370.02 -1.54 -99.08 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -2.38 Total: 17.30 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 7.46 Total: 16.98 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -7.37 Total: -120.74 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.11 Total: -48.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -97.54 -1.54 -99.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001063999566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.805 kcal (2) G-P(sol) polarization free energy of solvation -97.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds