Wall clock time and date at job start Tue Mar 31 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48508 * 109.46777 * 269.99710 * 3 2 1 5 5 H 1.48498 * 109.46832 * 29.99399 * 3 2 1 6 6 H 1.48494 * 109.47427 * 149.99628 * 3 2 1 7 7 C 1.38803 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99268 * 0.02562 * 7 2 1 9 9 S 1.76190 * 120.00509 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00201 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00350 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.62888 * 0.02562 * 13 11 10 15 15 C 1.53187 * 108.77484 * 233.60317 * 14 13 11 16 16 C 1.53035 * 109.31510 * 305.36607 * 15 14 13 17 17 C 1.53045 * 109.54002 * 61.36071 * 16 15 14 18 18 H 1.08996 * 109.49149 * 58.61954 * 17 16 15 19 19 N 1.46500 * 109.49633 * 178.68617 * 17 16 15 20 20 C 1.34779 * 119.99694 * 205.00158 * 19 17 16 21 21 O 1.21553 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.47870 * 120.00043 * 180.02562 * 20 19 17 23 23 N 1.34552 * 126.04719 * 0.02562 * 22 20 19 24 24 C 1.30868 * 107.26947 * 179.97438 * 23 22 20 25 25 N 1.34584 * 107.62357 * 0.02562 * 24 23 22 26 26 H 0.97001 * 125.74213 * 180.02562 * 25 24 23 27 27 N 1.28842 * 108.50460 * 359.97438 * 25 24 23 28 28 C 1.46925 * 120.63249 * 180.02562 * 13 11 10 29 29 H 0.96996 * 120.00750 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47718 * 59.99879 * 10 9 7 31 31 H 1.09001 * 109.46690 * 299.99836 * 10 9 7 32 32 H 1.09000 * 109.58555 * 113.81234 * 14 13 11 33 33 H 1.09008 * 109.58475 * 353.39139 * 14 13 11 34 34 H 1.08997 * 109.49950 * 185.40909 * 15 14 13 35 35 H 1.09009 * 109.49618 * 65.31620 * 15 14 13 36 36 H 1.09006 * 109.45740 * 301.34804 * 16 15 14 37 37 H 1.09002 * 109.46411 * 181.38786 * 16 15 14 38 38 H 0.96991 * 120.00189 * 25.00536 * 19 17 16 39 39 H 1.08002 * 126.18380 * 180.26165 * 24 23 22 40 40 H 1.08997 * 109.58749 * 6.60705 * 28 13 11 41 41 H 1.09003 * 109.58291 * 246.18394 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2962 0.0025 13 7 6.0458 -4.4946 0.0026 14 6 5.1244 -5.6391 0.0015 15 6 5.4841 -6.5628 1.1694 16 6 6.9626 -6.9462 1.0746 17 6 7.8255 -5.6860 1.1720 18 1 7.6217 -5.1776 2.1144 19 7 9.2415 -6.0571 1.1127 20 6 10.1725 -5.2530 1.6632 21 8 9.8372 -4.2201 2.2094 22 6 11.6018 -5.6272 1.6029 23 7 12.1065 -6.7358 1.0314 24 6 13.4051 -6.6975 1.1891 25 7 13.7012 -5.5674 1.8574 26 1 14.5905 -5.2772 2.1138 27 7 12.6045 -4.9354 2.0981 28 6 7.4923 -4.7523 0.0043 29 1 -0.4851 0.8399 -0.0004 30 1 3.6441 -3.4314 -0.8892 31 1 3.6433 -3.4317 0.8907 32 1 5.2193 -6.1837 -0.9379 33 1 4.1004 -5.2839 0.1185 34 1 4.8712 -7.4630 1.1234 35 1 5.3020 -6.0458 2.1116 36 1 7.1490 -7.4411 0.1214 37 1 7.2153 -7.6233 1.8906 38 1 9.5089 -6.8814 0.6772 39 1 14.1117 -7.4369 0.8421 40 1 8.0308 -3.8121 0.1231 41 1 7.7803 -5.2246 -0.9349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070453214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:15 Heat of formation + Delta-G solvation = 21.751175 kcal Electronic energy + Delta-G solvation = -26277.851371 eV Core-core repulsion = 22321.097315 eV Total energy + Delta-G solvation = -3956.754056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.94991 -40.43143 -39.31720 -37.29869 -34.88482 -33.99443 -32.41710 -32.35538 -31.89845 -30.74671 -28.83592 -25.63824 -25.42303 -25.07359 -23.41528 -22.92851 -21.21690 -20.74659 -19.50961 -19.05516 -17.73201 -17.44967 -16.84547 -16.79541 -16.45184 -15.84263 -15.55056 -15.20692 -14.91363 -14.80022 -14.39528 -14.35030 -13.83176 -13.71663 -13.30705 -13.12764 -12.86095 -12.74562 -12.67451 -12.01399 -11.84008 -11.33054 -11.27603 -11.22783 -11.17464 -11.04564 -10.96611 -10.84558 -10.54651 -10.50058 -10.23976 -9.82017 -9.59713 -9.37335 -8.96131 -8.51771 -8.43059 -6.86953 -6.25042 -3.96200 0.95341 1.60690 2.00266 2.59114 2.84190 2.98804 3.04596 3.25975 3.37486 3.56150 3.60264 3.66615 4.16915 4.29719 4.37441 4.41483 4.57346 4.68409 4.69968 4.86987 5.08360 5.14025 5.14414 5.25351 5.37184 5.44624 5.54276 5.63729 5.68772 5.69545 5.75151 5.80952 5.91545 5.97222 6.02930 6.11822 6.17676 6.59120 7.07220 7.49530 7.50728 7.87510 7.97931 8.44939 8.50546 9.21492 10.84055 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.002311 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.088624 B =12114.028408 C =13222.464294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.120 4.120 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.617 5.617 14 C 0.103 3.897 15 C -0.132 4.132 16 C -0.125 4.125 17 C 0.133 3.867 18 H 0.098 0.902 19 N -0.704 5.704 20 C 0.612 3.388 21 O -0.503 6.503 22 C 0.149 3.851 23 N -0.486 5.486 24 C 0.199 3.801 25 N -0.400 5.400 26 H 0.454 0.546 27 N -0.245 5.245 28 C 0.104 3.896 29 H 0.270 0.730 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.410 0.590 39 H 0.231 0.769 40 H 0.099 0.901 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.991 -22.722 1.535 34.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.271 4.271 11 C 0.320 3.680 12 O -0.386 6.386 13 N -0.353 5.353 14 C -0.020 4.020 15 C -0.171 4.171 16 C -0.163 4.163 17 C 0.028 3.972 18 H 0.116 0.884 19 N -0.357 5.357 20 C 0.393 3.607 21 O -0.373 6.373 22 C -0.132 4.132 23 N -0.213 5.213 24 C -0.099 4.099 25 N -0.123 5.123 26 H 0.301 0.699 27 N -0.085 5.085 28 C -0.020 4.020 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.247 0.753 40 H 0.117 0.883 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.249 -20.111 2.079 33.133 hybrid contribution 0.286 -0.892 -0.205 0.959 sum 26.536 -21.004 1.874 33.894 Atomic orbital electron populations 1.69932 1.05891 1.27731 1.48192 1.24705 0.94448 0.98958 0.93197 0.86743 0.81978 0.83283 0.79926 1.19235 1.19976 1.15852 1.22311 0.88284 0.97502 1.58655 0.89386 1.84856 1.09204 1.00172 1.97393 1.23303 0.93961 1.04206 1.05581 1.20334 0.90671 0.81793 0.75155 1.90715 1.58676 1.41617 1.47636 1.47994 1.05877 1.05872 1.75580 1.21813 0.94493 0.87245 0.98430 1.21901 0.95279 1.00164 0.99741 1.21801 0.95052 0.96333 1.03098 1.21424 0.78621 0.96280 1.00887 0.88439 1.45599 1.06086 1.25422 1.58609 1.16303 0.81609 0.83579 0.79161 1.90931 1.80254 1.23522 1.42589 1.23816 0.95944 0.91300 1.02156 1.71281 1.06982 1.21172 1.21831 1.26622 0.94147 0.92034 0.97097 1.45286 1.09526 1.16757 1.40742 0.69934 1.74421 0.92459 1.21577 1.20020 1.21851 0.81840 1.01154 0.97181 0.91982 0.88510 0.88431 0.91137 0.88767 0.89786 0.90748 0.90866 0.90735 0.75383 0.75269 0.88304 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.27 27.74 -169.99 -4.72 17.56 16 4 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.23 -6.15 6.74 56.52 0.38 -5.76 16 7 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.73 18.54 -107.50 -1.99 -5.72 16 10 C -0.12 -2.40 4.50 36.01 0.16 -2.24 16 11 C 0.53 10.20 7.72 -10.98 -0.08 10.11 16 12 O -0.51 -11.98 15.28 5.55 0.08 -11.89 16 13 N -0.62 -8.73 2.97 -172.77 -0.51 -9.25 16 14 C 0.10 1.04 6.34 -3.71 -0.02 1.02 16 15 C -0.13 -1.04 6.08 -26.62 -0.16 -1.20 16 16 C -0.12 -0.90 5.35 -26.69 -0.14 -1.05 16 17 C 0.13 1.41 2.60 -67.82 -0.18 1.24 16 18 H 0.10 1.30 7.58 -51.93 -0.39 0.90 16 19 N -0.70 -6.90 5.08 -54.63 -0.28 -7.18 16 20 C 0.61 7.97 7.80 -12.32 -0.10 7.88 16 21 O -0.50 -8.76 16.75 5.32 0.09 -8.67 16 22 C 0.15 1.65 7.96 -156.35 -1.24 0.41 16 23 N -0.49 -3.94 11.09 -12.36 -0.14 -4.08 16 24 C 0.20 0.79 13.14 -90.48 -1.19 -0.40 16 25 N -0.40 -1.92 6.93 29.56 0.20 -1.71 16 26 H 0.45 0.19 8.96 -190.21 -1.71 -1.52 16 27 N -0.25 -2.58 12.30 32.07 0.39 -2.19 16 28 C 0.10 1.36 6.01 -3.72 -0.02 1.34 16 29 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.10 1.78 7.94 -51.92 -0.41 1.36 16 31 H 0.10 1.80 7.69 -51.92 -0.40 1.40 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.98 5.93 -51.92 -0.31 0.67 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.41 3.00 8.31 -40.82 -0.34 2.66 16 39 H 0.23 -0.36 8.06 -52.49 -0.42 -0.78 16 40 H 0.10 1.67 7.01 -51.93 -0.36 1.31 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -41.17 361.33 -9.87 -51.04 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.46 Total: -2.29 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -2.76 Total: 4.99 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.45 Total: -50.45 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.57 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.72 Total: 17.56 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -41.17 -9.87 -51.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070453214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.790 kcal (2) G-P(sol) polarization free energy of solvation -41.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds