Wall clock time and date at job start Tue Mar 31 2020 22:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48508 * 109.46777 * 269.99710 * 3 2 1 5 5 H 1.48498 * 109.46832 * 29.99399 * 3 2 1 6 6 H 1.48494 * 109.47427 * 149.99628 * 3 2 1 7 7 C 1.38803 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99268 * 0.02562 * 7 2 1 9 9 S 1.76190 * 120.00509 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00201 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47298 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00350 * 179.97438 * 11 10 9 14 14 C 1.46931 * 120.62888 * 0.02562 * 13 11 10 15 15 C 1.53187 * 108.77484 * 233.60317 * 14 13 11 16 16 C 1.53035 * 109.31510 * 305.36607 * 15 14 13 17 17 C 1.53045 * 109.54002 * 61.36071 * 16 15 14 18 18 H 1.08996 * 109.49149 * 58.61954 * 17 16 15 19 19 N 1.46500 * 109.49633 * 178.68617 * 17 16 15 20 20 C 1.34779 * 119.99694 * 205.00158 * 19 17 16 21 21 O 1.21553 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.47870 * 120.00043 * 180.02562 * 20 19 17 23 23 N 1.34552 * 126.04719 * 0.02562 * 22 20 19 24 24 C 1.30868 * 107.26947 * 179.97438 * 23 22 20 25 25 N 1.34584 * 107.62357 * 0.02562 * 24 23 22 26 26 H 0.97001 * 125.74213 * 180.02562 * 25 24 23 27 27 N 1.28842 * 108.50460 * 359.97438 * 25 24 23 28 28 C 1.46925 * 120.63249 * 180.02562 * 13 11 10 29 29 H 0.96996 * 120.00750 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47718 * 59.99879 * 10 9 7 31 31 H 1.09001 * 109.46690 * 299.99836 * 10 9 7 32 32 H 1.09000 * 109.58555 * 113.81234 * 14 13 11 33 33 H 1.09008 * 109.58475 * 353.39139 * 14 13 11 34 34 H 1.08997 * 109.49950 * 185.40909 * 15 14 13 35 35 H 1.09009 * 109.49618 * 65.31620 * 15 14 13 36 36 H 1.09006 * 109.45740 * 301.34804 * 16 15 14 37 37 H 1.09002 * 109.46411 * 181.38786 * 16 15 14 38 38 H 0.96991 * 120.00189 * 25.00536 * 19 17 16 39 39 H 1.08002 * 126.18380 * 180.26165 * 24 23 22 40 40 H 1.08997 * 109.58749 * 6.60705 * 28 13 11 41 41 H 1.09003 * 109.58291 * 246.18394 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2962 0.0025 13 7 6.0458 -4.4946 0.0026 14 6 5.1244 -5.6391 0.0015 15 6 5.4841 -6.5628 1.1694 16 6 6.9626 -6.9462 1.0746 17 6 7.8255 -5.6860 1.1720 18 1 7.6217 -5.1776 2.1144 19 7 9.2415 -6.0571 1.1127 20 6 10.1725 -5.2530 1.6632 21 8 9.8372 -4.2201 2.2094 22 6 11.6018 -5.6272 1.6029 23 7 12.1065 -6.7358 1.0314 24 6 13.4051 -6.6975 1.1891 25 7 13.7012 -5.5674 1.8574 26 1 14.5905 -5.2772 2.1138 27 7 12.6045 -4.9354 2.0981 28 6 7.4923 -4.7523 0.0043 29 1 -0.4851 0.8399 -0.0004 30 1 3.6441 -3.4314 -0.8892 31 1 3.6433 -3.4317 0.8907 32 1 5.2193 -6.1837 -0.9379 33 1 4.1004 -5.2839 0.1185 34 1 4.8712 -7.4630 1.1234 35 1 5.3020 -6.0458 2.1116 36 1 7.1490 -7.4411 0.1214 37 1 7.2153 -7.6233 1.8906 38 1 9.5089 -6.8814 0.6772 39 1 14.1117 -7.4369 0.8421 40 1 8.0308 -3.8121 0.1231 41 1 7.7803 -5.2246 -0.9349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070453214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:14 Heat of formation + Delta-G solvation = -10.811302 kcal Electronic energy + Delta-G solvation = -26279.263386 eV Core-core repulsion = 22321.097315 eV Total energy + Delta-G solvation = -3958.166071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.49581 -41.52537 -40.51370 -38.48203 -35.93262 -34.67599 -34.59876 -33.32409 -32.51938 -31.90282 -30.10572 -27.86918 -26.29021 -26.11580 -23.90048 -23.70485 -22.20590 -21.60203 -20.52385 -19.95103 -19.49509 -18.39656 -18.10870 -17.48159 -17.39687 -17.20013 -16.95648 -16.65439 -16.03121 -15.83012 -15.65336 -15.27227 -15.17337 -14.97151 -14.85466 -14.40999 -14.23950 -13.75550 -13.54140 -13.36033 -13.22550 -13.02971 -12.73842 -12.66772 -12.10274 -12.00051 -11.87665 -11.77985 -11.68706 -11.62881 -11.51432 -11.17663 -10.99504 -10.87918 -10.50976 -10.50452 -9.66200 -9.01414 -8.51888 -6.22644 0.23793 0.94983 1.11864 1.29581 1.34980 1.47279 1.50954 1.55246 1.98488 2.17640 2.24179 2.27205 2.68558 2.86180 3.04385 3.47555 3.57273 3.70388 3.81564 3.95131 4.00948 4.06859 4.18485 4.18901 4.38356 4.52812 4.56485 4.72387 4.77276 4.85957 4.91437 5.03111 5.13425 5.15364 5.21602 5.38673 5.51354 5.71033 5.91015 6.11224 6.21268 6.30207 6.90237 6.93717 7.03907 7.06547 8.60175 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.002311 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.088624 B =12114.028408 C =13222.464294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.242 1.242 7 C -0.524 4.524 8 H 0.067 0.933 9 S -0.186 6.186 10 C -0.101 4.101 11 C 0.529 3.471 12 O -0.568 6.568 13 N -0.602 5.602 14 C 0.092 3.908 15 C -0.127 4.127 16 C -0.114 4.114 17 C 0.139 3.861 18 H 0.063 0.937 19 N -0.683 5.683 20 C 0.607 3.393 21 O -0.563 6.563 22 C 0.124 3.876 23 N -0.504 5.504 24 C 0.225 3.775 25 N -0.384 5.384 26 H 0.472 0.528 27 N -0.286 5.286 28 C 0.105 3.895 29 H 0.277 0.723 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.426 0.574 39 H 0.289 0.711 40 H 0.052 0.948 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.889 -26.263 0.666 38.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.167 1.167 7 C -0.671 4.671 8 H 0.085 0.915 9 S 0.040 5.960 10 C -0.251 4.251 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.337 5.337 14 C -0.029 4.029 15 C -0.166 4.166 16 C -0.152 4.152 17 C 0.033 3.967 18 H 0.081 0.919 19 N -0.336 5.336 20 C 0.390 3.610 21 O -0.438 6.438 22 C -0.156 4.156 23 N -0.231 5.231 24 C -0.072 4.072 25 N -0.110 5.110 26 H 0.323 0.677 27 N -0.128 5.128 28 C -0.019 4.019 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.265 0.735 39 H 0.305 0.695 40 H 0.071 0.929 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 28.165 -23.758 1.195 36.867 hybrid contribution -0.154 -0.023 0.043 0.161 sum 28.012 -23.782 1.238 36.766 Atomic orbital electron populations 1.69996 1.07059 1.28959 1.49144 1.25492 0.95262 1.02011 0.93012 0.85920 0.80590 0.80007 0.80185 1.18669 1.18180 1.16655 1.22412 0.89788 0.96821 1.58126 0.91488 1.84882 1.06978 1.06544 1.97574 1.23253 0.95227 0.99281 1.07372 1.20198 0.89809 0.83012 0.75285 1.90698 1.59487 1.43720 1.50705 1.48014 1.07151 1.05354 1.73162 1.22253 0.93321 0.86170 1.01198 1.21915 0.96220 1.00742 0.97708 1.21810 0.93515 0.94386 1.05496 1.21314 0.79715 0.97600 0.98047 0.91853 1.45438 1.05361 1.25267 1.57525 1.16733 0.83025 0.82939 0.78339 1.90891 1.81458 1.26070 1.45357 1.23431 0.95059 0.92928 1.04169 1.71245 1.09003 1.20292 1.22563 1.27717 0.93597 0.91639 0.94234 1.45273 1.09137 1.16587 1.39971 0.67726 1.74309 0.93941 1.23304 1.21199 1.21913 0.80555 0.99808 0.99620 0.91349 0.86411 0.86782 0.87869 0.89054 0.86232 0.92501 0.87904 0.88913 0.73493 0.69544 0.92942 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.97 21.65 0.30 -55.90 16 2 C 0.05 2.87 5.50 84.86 0.47 3.33 16 3 Si 0.91 46.57 27.74 68.60 1.90 48.47 16 4 H -0.26 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.24 -12.63 6.74 99.48 0.67 -11.96 16 7 C -0.52 -31.09 10.04 67.96 0.68 -30.41 16 8 H 0.07 4.13 8.03 -2.91 -0.02 4.10 16 9 S -0.19 -9.93 18.54 -56.49 -1.05 -10.97 16 10 C -0.10 -4.02 4.50 71.24 0.32 -3.70 16 11 C 0.53 20.59 7.72 87.66 0.68 21.27 16 12 O -0.57 -27.81 15.28 -3.04 -0.05 -27.85 16 13 N -0.60 -16.64 2.97 -818.92 -2.43 -19.07 16 14 C 0.09 1.57 6.34 86.36 0.55 2.12 16 15 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 16 C -0.11 -1.25 5.35 30.62 0.16 -1.09 16 17 C 0.14 2.88 2.60 45.07 0.12 3.00 16 18 H 0.06 1.78 7.58 -2.39 -0.02 1.77 16 19 N -0.68 -13.05 5.08 -445.03 -2.26 -15.31 16 20 C 0.61 16.56 7.80 86.79 0.68 17.24 16 21 O -0.56 -21.39 16.75 -3.88 -0.06 -21.46 16 22 C 0.12 2.76 7.96 137.13 1.09 3.85 16 23 N -0.50 -7.13 11.09 -193.03 -2.14 -9.27 16 24 C 0.22 1.01 13.14 180.30 2.37 3.38 16 25 N -0.38 -2.94 6.93 -60.38 -0.42 -3.36 16 26 H 0.47 -0.67 8.96 -219.80 -1.97 -2.64 16 27 N -0.29 -6.02 12.30 -52.44 -0.64 -6.67 16 28 C 0.11 2.74 6.01 86.36 0.52 3.26 16 29 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.12 4.20 7.94 -2.40 -0.02 4.18 16 31 H 0.11 4.17 7.69 -2.39 -0.02 4.15 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.66 5.93 -2.38 -0.01 1.65 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.43 5.37 8.31 -92.71 -0.77 4.60 16 39 H 0.29 -2.56 8.06 -2.91 -0.02 -2.59 16 40 H 0.05 1.90 7.01 -2.39 -0.02 1.88 16 41 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -97.46 361.33 -0.71 -98.18 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -1.68 Total: 2.36 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 7.82 Total: 20.85 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -7.60 Total: -109.57 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.11 Total: -49.31 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Atomic # 16 Polarization: -9.93 SS G_CDS: -1.05 Total: -10.97 kcal Total: -97.46 -0.71 -98.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070453214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.365 kcal (2) G-P(sol) polarization free energy of solvation -97.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds