Wall clock time and date at job start Tue Mar 31 2020 22:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46795 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00078 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46927 * 120.62699 * 359.44533 * 13 11 10 15 15 C 1.52755 * 109.00696 * 233.58141 * 14 13 11 16 16 C 1.53035 * 109.38924 * 305.59167 * 15 14 13 17 17 C 1.53044 * 109.53745 * 61.23716 * 16 15 14 18 18 H 1.09005 * 109.51719 * 58.60566 * 17 16 15 19 19 N 1.46496 * 109.49837 * 178.68330 * 17 16 15 20 20 C 1.34780 * 120.00130 * 204.83829 * 19 17 16 21 21 O 1.21616 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.47225 * 119.99944 * 180.02562 * 20 19 17 23 23 C 1.37008 * 127.19031 * 180.02562 * 22 20 19 24 24 N 1.33314 * 106.37599 * 179.97438 * 23 22 20 25 25 N 1.28515 * 109.43932 * 359.97438 * 24 23 22 26 26 N 1.28714 * 110.63707 * 359.71750 * 25 24 23 27 27 H 0.97001 * 126.03659 * 180.29906 * 26 25 24 28 28 C 1.46923 * 120.63216 * 179.72717 * 13 11 10 29 29 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 31 31 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 32 32 H 1.09000 * 109.58817 * 353.42412 * 14 13 11 33 33 H 1.09005 * 109.58520 * 113.84651 * 14 13 11 34 34 H 1.09008 * 109.56349 * 185.55747 * 15 14 13 35 35 H 1.09004 * 109.38523 * 65.52320 * 15 14 13 36 36 H 1.09005 * 109.46064 * 301.22095 * 16 15 14 37 37 H 1.08998 * 109.45584 * 181.25335 * 16 15 14 38 38 H 0.97001 * 120.00165 * 24.84626 * 19 17 16 39 39 H 1.08005 * 126.81203 * 0.02562 * 23 22 20 40 40 H 1.08997 * 109.58570 * 246.16095 * 28 13 11 41 41 H 1.09000 * 109.58284 * 6.44197 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 4.2959 -6.1174 -0.0154 15 6 4.9098 -6.8953 -1.1778 16 6 4.5032 -8.3671 -1.0752 17 6 2.9799 -8.4847 -1.1641 18 1 2.6360 -8.0575 -2.1062 19 7 2.5937 -9.8962 -1.0974 20 6 1.4273 -10.3020 -1.6373 21 8 0.6958 -9.4965 -2.1804 22 6 1.0390 -11.7205 -1.5697 23 6 -0.1037 -12.2909 -2.0660 24 7 -0.0310 -13.5904 -1.7774 25 7 1.0653 -13.8287 -1.1507 26 7 1.7482 -12.7475 -1.0038 27 1 2.6111 -12.6724 -0.5672 28 6 2.3441 -7.7247 0.0042 29 1 -0.4850 0.8401 0.0004 30 1 3.1251 -3.7318 0.8875 31 1 3.1238 -3.7310 -0.8924 32 1 4.4991 -5.0539 -0.1413 33 1 4.7284 -6.4656 0.9226 34 1 5.9962 -6.8144 -1.1379 35 1 4.5487 -6.4829 -2.1200 36 1 4.8437 -8.7723 -0.1223 37 1 4.9589 -8.9274 -1.8916 38 1 3.1773 -10.5388 -0.6645 39 1 -0.9040 -11.7877 -2.5882 40 1 2.6141 -8.2066 0.9438 41 1 1.2597 -7.7213 -0.1064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070454899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:35 Heat of formation + Delta-G solvation = 27.762080 kcal Electronic energy + Delta-G solvation = -26269.002490 eV Core-core repulsion = 22312.509086 eV Total energy + Delta-G solvation = -3956.493404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.84869 -40.63169 -39.49140 -37.43165 -35.18904 -34.01854 -32.57383 -32.43894 -31.98316 -30.70717 -28.81195 -25.64548 -25.33915 -25.05987 -23.69643 -22.92010 -21.54195 -21.34466 -19.80824 -19.09695 -17.79284 -17.25340 -16.90275 -16.83836 -16.50640 -15.97272 -15.42295 -15.11643 -14.82022 -14.80507 -14.68298 -14.58676 -14.04863 -13.89413 -13.39818 -13.21040 -12.99900 -12.70835 -12.57637 -12.08474 -11.92325 -11.78351 -11.43992 -11.39865 -11.27260 -11.07932 -11.03998 -11.01747 -10.77688 -10.67961 -10.06666 -9.89537 -9.79667 -9.40620 -9.08228 -8.60977 -8.24045 -6.51973 -6.22911 -3.93923 0.36629 1.81175 1.87118 2.26119 2.57605 2.91633 3.00044 3.20917 3.23984 3.28710 3.55204 3.79188 4.09274 4.18313 4.26063 4.40453 4.46357 4.53178 4.64015 4.67659 4.86642 4.95890 5.09613 5.12086 5.17635 5.38641 5.45077 5.51220 5.54673 5.55537 5.57215 5.68794 5.81140 5.84283 5.93245 6.01972 6.06804 6.51133 6.73654 7.45273 7.48040 7.57735 7.74598 8.33344 8.50079 9.22101 10.84458 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.002159 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.061736 B =12964.799750 C =13848.277298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.509 6.509 13 N -0.619 5.619 14 C 0.105 3.895 15 C -0.133 4.133 16 C -0.125 4.125 17 C 0.132 3.868 18 H 0.101 0.899 19 N -0.720 5.720 20 C 0.593 3.407 21 O -0.495 6.495 22 C -0.066 4.066 23 C 0.037 3.963 24 N -0.268 5.268 25 N -0.046 5.046 26 N -0.376 5.376 27 H 0.450 0.550 28 C 0.104 3.896 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.395 0.605 39 H 0.207 0.793 40 H 0.064 0.936 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.766 -24.059 -1.193 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.300 4.300 11 C 0.323 3.677 12 O -0.382 6.382 13 N -0.356 5.356 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.163 4.163 17 C 0.027 3.973 18 H 0.119 0.881 19 N -0.372 5.372 20 C 0.376 3.624 21 O -0.366 6.366 22 C -0.200 4.200 23 C -0.122 4.122 24 N -0.133 5.133 25 N -0.028 5.028 26 N -0.103 5.103 27 H 0.296 0.704 28 C -0.020 4.020 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.228 0.772 39 H 0.224 0.776 40 H 0.082 0.918 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.062 -25.113 -1.396 27.477 hybrid contribution 3.017 2.068 0.362 3.675 sum 14.079 -23.045 -1.034 27.026 Atomic orbital electron populations 1.70021 1.05950 1.27481 1.46722 1.25000 0.95033 0.99038 0.94546 0.86167 0.79382 0.81585 0.78351 1.20260 1.20751 1.19712 1.22846 0.94856 0.91613 1.59069 0.90940 1.85476 1.04842 0.96330 1.96692 1.23549 1.06559 0.95194 1.04708 1.20396 0.86222 0.86176 0.74941 1.90722 1.15153 1.85067 1.47270 1.48029 1.06396 1.05175 1.76002 1.21684 0.80009 1.01961 0.98219 1.21829 1.01240 0.94085 0.99981 1.21807 0.93546 0.98127 1.02841 1.21480 0.95099 0.79458 1.01278 0.88121 1.45838 1.21252 1.10527 1.59631 1.16786 0.81773 0.84648 0.79195 1.90981 1.50860 1.52325 1.42404 1.22397 0.97506 0.91127 1.08973 1.24012 0.97727 0.90133 1.00319 1.75040 1.10882 1.15214 1.12173 1.78244 1.00934 1.08808 1.14822 1.45589 1.19299 1.05704 1.39731 0.70383 1.21806 1.01730 0.81745 0.96746 0.92153 0.89214 0.89190 0.88736 0.91355 0.89793 0.90700 0.91030 0.90837 0.77150 0.77631 0.91790 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.95 4.51 36.00 0.16 -2.79 16 11 C 0.53 9.99 7.72 -10.98 -0.08 9.90 16 12 O -0.51 -11.76 15.27 5.56 0.08 -11.67 16 13 N -0.62 -8.14 2.98 -173.03 -0.52 -8.65 16 14 C 0.10 0.94 6.31 -3.93 -0.02 0.92 16 15 C -0.13 -0.86 6.06 -26.84 -0.16 -1.02 16 16 C -0.13 -0.65 5.36 -26.69 -0.14 -0.79 16 17 C 0.13 1.09 2.60 -67.81 -0.18 0.91 16 18 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 19 N -0.72 -4.30 5.08 -54.83 -0.28 -4.58 16 20 C 0.59 5.36 7.77 -12.61 -0.10 5.26 16 21 O -0.49 -6.84 16.59 5.26 0.09 -6.75 16 22 C -0.07 -0.50 7.17 -82.33 -0.59 -1.09 16 23 C 0.04 0.33 11.87 -17.35 -0.21 0.13 16 24 N -0.27 -2.73 12.35 30.47 0.38 -2.35 16 25 N -0.05 -0.39 13.35 60.35 0.81 0.41 16 26 N -0.38 -1.97 6.97 33.31 0.23 -1.74 16 27 H 0.45 0.34 8.32 -190.33 -1.58 -1.24 16 28 C 0.10 1.18 6.01 -3.71 -0.02 1.16 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.09 1.62 7.96 -51.92 -0.41 1.21 16 31 H 0.09 1.62 7.67 -51.92 -0.40 1.22 16 32 H 0.09 0.90 5.94 -51.93 -0.31 0.60 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.39 0.78 7.87 -40.82 -0.32 0.46 16 39 H 0.21 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 1.53 7.00 -51.93 -0.36 1.16 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -38.96 362.98 -7.67 -46.63 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.28 Total: -3.55 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.15 Total: -0.21 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 1.35 Total: -42.24 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.17 Total: -18.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.96 -7.67 -46.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070454899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.394 kcal (2) G-P(sol) polarization free energy of solvation -38.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds