Wall clock time and date at job start Tue Mar 31 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48494 * 109.47227 * 270.00505 * 3 2 1 5 5 H 1.48500 * 109.46795 * 30.00519 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00078 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46927 * 120.62699 * 359.44533 * 13 11 10 15 15 C 1.52755 * 109.00696 * 233.58141 * 14 13 11 16 16 C 1.53035 * 109.38924 * 305.59167 * 15 14 13 17 17 C 1.53044 * 109.53745 * 61.23716 * 16 15 14 18 18 H 1.09005 * 109.51719 * 58.60566 * 17 16 15 19 19 N 1.46496 * 109.49837 * 178.68330 * 17 16 15 20 20 C 1.34780 * 120.00130 * 204.83829 * 19 17 16 21 21 O 1.21616 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.47225 * 119.99944 * 180.02562 * 20 19 17 23 23 C 1.37008 * 127.19031 * 180.02562 * 22 20 19 24 24 N 1.33314 * 106.37599 * 179.97438 * 23 22 20 25 25 N 1.28515 * 109.43932 * 359.97438 * 24 23 22 26 26 N 1.28714 * 110.63707 * 359.71750 * 25 24 23 27 27 H 0.97001 * 126.03659 * 180.29906 * 26 25 24 28 28 C 1.46923 * 120.63216 * 179.72717 * 13 11 10 29 29 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 31 31 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 32 32 H 1.09000 * 109.58817 * 353.42412 * 14 13 11 33 33 H 1.09005 * 109.58520 * 113.84651 * 14 13 11 34 34 H 1.09008 * 109.56349 * 185.55747 * 15 14 13 35 35 H 1.09004 * 109.38523 * 65.52320 * 15 14 13 36 36 H 1.09005 * 109.46064 * 301.22095 * 16 15 14 37 37 H 1.08998 * 109.45584 * 181.25335 * 16 15 14 38 38 H 0.97001 * 120.00165 * 24.84626 * 19 17 16 39 39 H 1.08005 * 126.81203 * 0.02562 * 23 22 20 40 40 H 1.08997 * 109.58570 * 246.16095 * 28 13 11 41 41 H 1.09000 * 109.58284 * 6.44197 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 4.2959 -6.1174 -0.0154 15 6 4.9098 -6.8953 -1.1778 16 6 4.5032 -8.3671 -1.0752 17 6 2.9799 -8.4847 -1.1641 18 1 2.6360 -8.0575 -2.1062 19 7 2.5937 -9.8962 -1.0974 20 6 1.4273 -10.3020 -1.6373 21 8 0.6958 -9.4965 -2.1804 22 6 1.0390 -11.7205 -1.5697 23 6 -0.1037 -12.2909 -2.0660 24 7 -0.0310 -13.5904 -1.7774 25 7 1.0653 -13.8287 -1.1507 26 7 1.7482 -12.7475 -1.0038 27 1 2.6111 -12.6724 -0.5672 28 6 2.3441 -7.7247 0.0042 29 1 -0.4850 0.8401 0.0004 30 1 3.1251 -3.7318 0.8875 31 1 3.1238 -3.7310 -0.8924 32 1 4.4991 -5.0539 -0.1413 33 1 4.7284 -6.4656 0.9226 34 1 5.9962 -6.8144 -1.1379 35 1 4.5487 -6.4829 -2.1200 36 1 4.8437 -8.7723 -0.1223 37 1 4.9589 -8.9274 -1.8916 38 1 3.1773 -10.5388 -0.6645 39 1 -0.9040 -11.7877 -2.5882 40 1 2.6141 -8.2066 0.9438 41 1 1.2597 -7.7213 -0.1064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070454899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:34 Heat of formation + Delta-G solvation = -4.324635 kcal Electronic energy + Delta-G solvation = -26270.393874 eV Core-core repulsion = 22312.509086 eV Total energy + Delta-G solvation = -3957.884788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.49259 -41.54537 -40.56746 -38.50281 -36.06674 -34.70981 -34.58565 -33.41500 -32.68608 -31.76221 -29.99596 -27.70049 -26.25348 -25.89181 -24.38396 -23.60646 -22.31726 -22.08832 -20.70664 -20.13807 -19.48425 -18.29052 -17.86049 -17.54637 -17.38142 -17.07458 -16.87866 -16.59368 -16.06000 -15.78205 -15.55817 -15.38003 -15.30522 -14.95374 -14.50392 -14.35590 -14.24870 -13.76772 -13.47676 -13.40994 -13.17213 -12.89180 -12.72948 -12.61789 -12.46076 -12.12630 -12.00942 -11.89596 -11.71694 -11.68646 -11.49417 -11.14389 -10.95952 -10.79085 -10.54152 -10.25658 -9.65600 -8.68660 -8.34444 -6.13566 -0.28737 1.10619 1.21664 1.32469 1.42966 1.44369 1.52700 1.56114 1.71714 1.86069 2.16187 2.27382 2.99709 3.20381 3.24236 3.50046 3.58884 3.70168 3.83635 3.85683 3.94276 3.99639 4.06224 4.18107 4.25157 4.41979 4.52994 4.55479 4.72706 4.76978 4.85829 4.89734 4.98379 5.10374 5.12517 5.36997 5.41532 5.53475 5.63647 6.16933 6.19686 6.25273 6.84698 7.06397 7.09051 7.11820 8.74868 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.002159 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.061736 B =12964.799750 C =13848.277298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.086 0.914 9 S -0.161 6.161 10 C -0.119 4.119 11 C 0.529 3.471 12 O -0.569 6.569 13 N -0.604 5.604 14 C 0.092 3.908 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.140 3.860 18 H 0.066 0.934 19 N -0.696 5.696 20 C 0.598 3.402 21 O -0.550 6.550 22 C -0.060 4.060 23 C 0.025 3.975 24 N -0.297 5.297 25 N -0.053 5.053 26 N -0.343 5.343 27 H 0.471 0.529 28 C 0.102 3.898 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.420 0.580 39 H 0.211 0.789 40 H 0.096 0.904 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.560 -25.168 -0.399 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.067 5.933 10 C -0.270 4.270 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.339 5.339 14 C -0.029 4.029 15 C -0.167 4.167 16 C -0.153 4.153 17 C 0.034 3.966 18 H 0.084 0.916 19 N -0.349 5.349 20 C 0.381 3.619 21 O -0.425 6.425 22 C -0.195 4.195 23 C -0.135 4.135 24 N -0.161 5.161 25 N -0.035 5.035 26 N -0.074 5.074 27 H 0.322 0.678 28 C -0.022 4.022 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.258 0.742 39 H 0.227 0.773 40 H 0.114 0.886 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.988 -26.308 -0.567 30.791 hybrid contribution 1.620 2.267 0.146 2.790 sum 17.608 -24.042 -0.421 29.803 Atomic orbital electron populations 1.70203 1.08089 1.28593 1.48046 1.26183 0.95978 1.03477 0.93766 0.84923 0.78251 0.75819 0.78791 1.19335 1.20470 1.17844 1.23185 0.95364 0.91683 1.58796 0.89612 1.85724 1.10949 0.99612 1.97039 1.23345 1.03231 0.93906 1.06556 1.20264 0.85995 0.86949 0.75117 1.90703 1.17671 1.85790 1.50524 1.48019 1.07828 1.04609 1.73442 1.22128 0.77018 1.02572 1.01170 1.21843 1.02949 0.94297 0.97652 1.21822 0.90089 0.97709 1.05644 1.21293 0.97500 0.79718 0.98095 0.91590 1.45566 1.20487 1.10277 1.58560 1.16912 0.81868 0.84602 0.78480 1.90974 1.52711 1.53798 1.44987 1.22041 0.97494 0.90698 1.09292 1.24235 0.98570 0.90079 1.00626 1.75034 1.11862 1.15839 1.13382 1.78168 1.00958 1.09529 1.14868 1.45499 1.19531 1.04207 1.38192 0.67778 1.21948 0.99401 0.81222 0.99675 0.92048 0.87008 0.87278 0.89324 0.88071 0.86330 0.92649 0.87686 0.88570 0.74171 0.77251 0.88605 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 2 C 0.01 0.60 5.49 84.86 0.47 1.06 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.54 -30.85 9.50 67.95 0.65 -30.20 16 8 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.16 -9.05 20.57 -56.49 -1.16 -10.21 16 10 C -0.12 -4.73 4.51 71.24 0.32 -4.41 16 11 C 0.53 20.24 7.72 87.65 0.68 20.92 16 12 O -0.57 -28.03 15.27 -3.04 -0.05 -28.08 16 13 N -0.60 -15.22 2.98 -819.74 -2.44 -17.66 16 14 C 0.09 1.33 6.31 86.22 0.54 1.88 16 15 C -0.13 -1.13 6.06 30.52 0.19 -0.94 16 16 C -0.11 -0.62 5.36 30.62 0.16 -0.46 16 17 C 0.14 2.04 2.60 45.07 0.12 2.15 16 18 H 0.07 1.49 7.58 -2.38 -0.02 1.47 16 19 N -0.70 -6.63 5.08 -445.63 -2.26 -8.90 16 20 C 0.60 10.50 7.77 86.60 0.67 11.17 16 21 O -0.55 -16.07 16.59 -4.08 -0.07 -16.14 16 22 C -0.06 -0.85 7.17 40.40 0.29 -0.56 16 23 C 0.02 0.45 11.87 84.18 1.00 1.45 16 24 N -0.30 -5.96 12.35 -57.50 -0.71 -6.67 16 25 N -0.05 -0.83 13.35 37.02 0.49 -0.34 16 26 N -0.34 -2.81 6.97 -48.52 -0.34 -3.15 16 27 H 0.47 -1.00 8.32 -219.90 -1.83 -2.82 16 28 C 0.10 2.21 6.01 86.36 0.52 2.73 16 29 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 30 H 0.11 3.90 7.96 -2.39 -0.02 3.89 16 31 H 0.11 3.87 7.67 -2.40 -0.02 3.85 16 32 H 0.09 1.41 5.94 -2.39 -0.01 1.40 16 33 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 37 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.42 -0.19 7.87 -92.71 -0.73 -0.92 16 39 H 0.21 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.71 7.00 -2.39 -0.02 1.69 16 Total: -1.00 -93.61 362.98 -0.08 -93.69 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -1.46 Total: 3.63 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.60 Total: 4.78 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.97 Total: -93.01 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.11 Total: -44.22 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.16 Total: -10.21 kcal Total: -93.61 -0.08 -93.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070454899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.363 kcal (2) G-P(sol) polarization free energy of solvation -93.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds