Wall clock time and date at job start Tue Mar 31 2020 22:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47044 * 275.00128 * 3 2 1 5 5 H 1.48496 * 109.47150 * 34.99662 * 3 2 1 6 6 H 1.48496 * 109.46867 * 155.00121 * 3 2 1 7 7 C 1.38815 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 186.87705 * 7 2 1 9 9 N 1.37008 * 119.99742 * 6.87354 * 7 2 1 10 10 C 1.47746 * 121.47908 * 206.16339 * 9 7 2 11 11 C 1.53003 * 109.06962 * 261.36562 * 10 9 7 12 12 N 1.47648 * 108.66427 * 292.01681 * 11 10 9 13 13 C 1.36025 * 116.89470 * 120.35109 * 12 11 10 14 14 O 1.21298 * 120.75170 * 14.00650 * 13 12 11 15 15 C 1.50750 * 119.01207 * 193.70977 * 13 12 11 16 16 C 1.52914 * 109.57690 * 115.36685 * 15 13 12 17 17 N 1.47772 * 109.28579 * 289.26402 * 16 15 13 18 18 C 1.34798 * 121.56589 * 264.71013 * 17 16 15 19 19 O 1.21566 * 119.99849 * 177.21976 * 18 17 16 20 20 C 1.47753 * 120.00012 * 357.23037 * 18 17 16 21 21 C 1.39354 * 124.11373 * 187.06420 * 20 18 17 22 22 N 1.30084 * 112.14353 * 179.97438 * 21 20 18 23 23 S 1.55925 * 108.75548 * 0.02562 * 22 21 20 24 24 N 1.31480 * 124.11725 * 6.75848 * 20 18 17 25 25 C 1.47809 * 116.65220 * 85.24080 * 17 16 15 26 26 C 1.47786 * 121.68054 * 25.79872 * 9 7 2 27 27 H 0.97007 * 119.99921 * 0.02562 * 1 2 3 28 28 H 1.09060 * 109.48343 * 21.20113 * 10 9 7 29 29 H 1.09020 * 109.66484 * 141.40366 * 10 9 7 30 30 H 1.08934 * 109.56220 * 52.13584 * 11 10 9 31 31 H 1.09068 * 109.60340 * 172.32036 * 11 10 9 32 32 H 0.97093 * 121.39697 * 301.82235 * 12 11 10 33 33 H 1.08967 * 109.45085 * 354.98573 * 15 13 12 34 34 H 1.09095 * 109.33343 * 235.29553 * 15 13 12 35 35 H 1.09100 * 109.48784 * 169.44306 * 16 15 13 36 36 H 1.09053 * 109.76622 * 49.41574 * 16 15 13 37 37 H 1.08001 * 123.92524 * 0.02562 * 21 20 18 38 38 H 1.09125 * 109.25838 * 119.46010 * 25 17 16 39 39 H 1.09007 * 109.18958 * 359.75687 * 25 17 16 40 40 H 1.08981 * 109.37256 * 174.70557 * 26 9 7 41 41 H 1.09165 * 109.28564 * 294.42790 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3919 2.1075 -1.3948 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0843 -1.2055 0.1114 9 7 1.3325 -2.3843 -0.1431 10 6 1.8692 -3.6511 0.3957 11 6 2.5536 -4.4244 -0.7334 12 7 1.5235 -4.8706 -1.6924 13 6 1.6443 -4.4312 -2.9740 14 8 2.6762 -3.9245 -3.3613 15 6 0.4763 -4.5884 -3.9141 16 6 -0.0389 -3.2089 -4.3263 17 7 -0.7055 -2.5718 -3.1715 18 6 -2.0398 -2.6488 -2.9964 19 8 -2.5527 -2.1573 -2.0098 20 6 -2.8791 -3.3305 -4.0034 21 6 -4.2724 -3.3390 -3.9832 22 7 -4.7732 -4.0081 -4.9801 23 16 -3.6036 -4.5659 -5.8474 24 7 -2.4022 -3.9983 -5.0307 25 6 0.1625 -1.8374 -2.2272 26 6 0.0283 -2.4528 -0.8347 27 1 -0.4850 0.8401 -0.0004 28 1 2.5944 -3.4342 1.1808 29 1 1.0554 -4.2491 0.8063 30 1 3.2724 -3.7776 -1.2349 31 1 3.0698 -5.2925 -0.3218 32 1 0.7831 -5.4336 -1.4139 33 1 -0.3178 -5.1442 -3.4163 34 1 0.7980 -5.1357 -4.8013 35 1 -0.7537 -3.3166 -5.1434 36 1 0.7945 -2.5871 -4.6551 37 1 -4.8673 -2.8465 -3.2282 38 1 -0.1444 -0.7906 -2.1958 39 1 1.1966 -1.9028 -2.5659 40 1 -0.2837 -3.4938 -0.9157 41 1 -0.7141 -1.8956 -0.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070943669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:00 Heat of formation + Delta-G solvation = 48.884143 kcal Electronic energy + Delta-G solvation = -29240.746668 eV Core-core repulsion = 25285.169186 eV Total energy + Delta-G solvation = -3955.577483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21598 -39.53778 -38.45677 -36.08394 -35.56221 -33.88814 -33.48584 -31.39060 -30.52304 -29.34655 -27.65292 -26.48443 -24.58255 -23.71956 -23.01714 -21.58637 -20.40694 -19.82283 -19.51732 -19.11190 -16.96088 -16.75255 -16.60381 -16.22491 -15.65348 -15.49006 -15.06009 -14.90990 -14.65971 -14.21753 -13.76347 -13.48520 -13.34890 -12.85183 -12.77403 -12.71484 -12.40446 -12.20379 -11.99945 -11.71287 -11.38903 -11.29721 -11.22722 -11.05599 -10.83972 -10.65080 -10.57369 -10.41164 -10.05190 -9.93693 -9.61109 -9.48808 -9.29153 -9.27158 -8.77261 -8.41256 -8.17698 -6.64796 -5.58437 -3.20906 0.30807 1.28289 1.51244 1.55346 3.00808 3.28008 3.38420 3.41004 3.48443 3.48973 3.76936 4.35643 4.51449 4.66217 5.03281 5.04104 5.24405 5.39541 5.42131 5.44677 5.49256 5.63058 5.88619 5.99863 6.07017 6.11102 6.15613 6.22577 6.42431 6.47404 6.56456 6.72821 6.90794 6.96655 6.98290 7.38048 7.71751 7.85798 7.97896 8.09940 8.37778 8.51527 8.66393 9.24649 9.84183 10.41675 11.34541 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004651 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.077572 B = 6018.756391 C = 7188.434066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.128 3.872 11 C 0.084 3.916 12 N -0.726 5.726 13 C 0.523 3.477 14 O -0.542 6.542 15 C -0.146 4.146 16 C 0.102 3.898 17 N -0.593 5.593 18 C 0.590 3.410 19 O -0.501 6.501 20 C 0.028 3.972 21 C 0.088 3.912 22 N -0.574 5.574 23 S 0.674 5.326 24 N -0.538 5.538 25 C 0.118 3.882 26 C 0.162 3.838 27 H 0.253 0.747 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.398 0.602 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.214 0.786 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.016 0.984 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 -12.418 -10.789 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.316 5.316 10 C 0.000 4.000 11 C -0.042 4.042 12 N -0.379 5.379 13 C 0.310 3.690 14 O -0.420 6.420 15 C -0.188 4.188 16 C -0.023 4.023 17 N -0.327 5.327 18 C 0.371 3.629 19 O -0.375 6.375 20 C -0.148 4.148 21 C -0.106 4.106 22 N -0.415 5.415 23 S 0.718 5.282 24 N -0.387 5.387 25 C -0.003 4.003 26 C 0.037 3.963 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.232 0.768 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.925 -12.750 -12.223 18.630 hybrid contribution 0.144 1.594 1.502 2.195 sum -5.781 -11.156 -10.722 16.517 Atomic orbital electron populations 1.69904 1.04711 1.25041 1.54145 1.25095 0.95403 0.97809 1.01209 0.86300 0.79052 0.84132 0.77501 1.21682 1.21749 1.20507 1.19091 0.90408 0.83278 1.44943 0.91543 1.44520 1.21665 1.02512 1.62917 1.21451 0.96684 0.88428 0.93397 1.22603 0.91504 0.98070 0.92043 1.46462 1.29486 1.52585 1.09349 1.20767 0.88449 0.76907 0.82912 1.90672 1.30575 1.44480 1.76223 1.22037 0.96965 0.99843 0.99927 1.22312 0.98782 0.91515 0.89726 1.48944 1.05424 1.51953 1.26360 1.16743 0.81639 0.80369 0.84193 1.90921 1.72126 1.46414 1.27992 1.22960 0.93979 1.01942 0.95914 1.23831 0.92100 0.97831 0.96849 1.72268 1.38303 1.18597 1.12314 1.79135 0.80949 1.39397 1.28742 1.73001 1.36039 1.17630 1.11997 1.22875 0.91710 0.96394 0.89281 1.21470 0.89149 0.94906 0.90789 0.93608 0.91895 0.94719 0.88932 0.93197 0.76775 0.90637 0.88339 0.86091 0.90019 0.76950 0.90044 0.90620 0.96541 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 9.23 55.49 0.51 -24.58 16 2 C 0.00 0.09 4.84 -17.43 -0.08 0.01 16 3 Si 0.90 21.72 29.56 -169.99 -5.02 16.70 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.54 9.23 -15.03 -0.14 -6.68 16 8 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 9 N -0.59 -14.06 2.71 -171.17 -0.46 -14.53 16 10 C 0.13 2.46 6.02 -3.36 -0.02 2.44 16 11 C 0.08 1.43 6.65 -3.41 -0.02 1.40 16 12 N -0.73 -11.33 3.81 -59.15 -0.23 -11.56 16 13 C 0.52 8.84 5.21 -10.39 -0.05 8.79 16 14 O -0.54 -11.25 16.03 5.54 0.09 -11.16 16 15 C -0.15 -1.96 5.99 -27.90 -0.17 -2.12 16 16 C 0.10 1.51 5.16 -3.39 -0.02 1.49 16 17 N -0.59 -10.57 2.60 -172.76 -0.45 -11.02 16 18 C 0.59 10.33 7.48 -12.36 -0.09 10.24 16 19 O -0.50 -10.52 15.83 5.31 0.08 -10.43 16 20 C 0.03 0.37 6.63 -83.71 -0.55 -0.18 16 21 C 0.09 1.05 11.23 -17.88 -0.20 0.85 16 22 N -0.57 -6.38 11.41 19.42 0.22 -6.16 16 23 S 0.67 5.86 23.69 -107.50 -2.55 3.31 16 24 N -0.54 -6.10 7.63 23.17 0.18 -5.92 16 25 C 0.12 2.63 4.10 -3.41 -0.01 2.61 16 26 C 0.16 3.75 3.60 -3.42 -0.01 3.74 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.06 1.19 8.03 -51.90 -0.42 0.77 16 29 H 0.03 0.63 8.03 -51.92 -0.42 0.21 16 30 H 0.09 1.88 6.82 -51.97 -0.35 1.53 16 31 H 0.05 0.71 8.15 -51.89 -0.42 0.29 16 32 H 0.40 5.27 8.59 -40.78 -0.35 4.92 16 33 H 0.07 0.93 7.95 -51.95 -0.41 0.52 16 34 H 0.10 1.10 8.15 -51.88 -0.42 0.68 16 35 H 0.12 1.56 4.68 -53.00 -0.25 1.32 16 36 H 0.08 1.31 7.72 -51.90 -0.40 0.91 16 37 H 0.21 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.08 2.09 6.78 -51.86 -0.35 1.74 16 39 H 0.08 1.81 6.37 -51.92 -0.33 1.48 16 40 H 0.02 0.35 6.41 -51.94 -0.33 0.01 16 41 H 0.09 2.56 5.84 -51.84 -0.30 2.26 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -32.07 337.68 -8.65 -40.72 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.73 Total: 6.94 kcal Atomic # 6 Polarization: 23.97 SS G_CDS: -1.38 Total: 22.60 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -0.23 Total: -73.76 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -2.55 Total: 3.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.07 -8.65 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070943669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.606 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds