Wall clock time and date at job start Tue Mar 31 2020 22:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47044 * 275.00128 * 3 2 1 5 5 H 1.48496 * 109.47150 * 34.99662 * 3 2 1 6 6 H 1.48496 * 109.46867 * 155.00121 * 3 2 1 7 7 C 1.38815 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 186.87705 * 7 2 1 9 9 N 1.37008 * 119.99742 * 6.87354 * 7 2 1 10 10 C 1.47746 * 121.47908 * 206.16339 * 9 7 2 11 11 C 1.53003 * 109.06962 * 261.36562 * 10 9 7 12 12 N 1.47648 * 108.66427 * 292.01681 * 11 10 9 13 13 C 1.36025 * 116.89470 * 120.35109 * 12 11 10 14 14 O 1.21298 * 120.75170 * 14.00650 * 13 12 11 15 15 C 1.50750 * 119.01207 * 193.70977 * 13 12 11 16 16 C 1.52914 * 109.57690 * 115.36685 * 15 13 12 17 17 N 1.47772 * 109.28579 * 289.26402 * 16 15 13 18 18 C 1.34798 * 121.56589 * 264.71013 * 17 16 15 19 19 O 1.21566 * 119.99849 * 177.21976 * 18 17 16 20 20 C 1.47753 * 120.00012 * 357.23037 * 18 17 16 21 21 C 1.39354 * 124.11373 * 187.06420 * 20 18 17 22 22 N 1.30084 * 112.14353 * 179.97438 * 21 20 18 23 23 S 1.55925 * 108.75548 * 0.02562 * 22 21 20 24 24 N 1.31480 * 124.11725 * 6.75848 * 20 18 17 25 25 C 1.47809 * 116.65220 * 85.24080 * 17 16 15 26 26 C 1.47786 * 121.68054 * 25.79872 * 9 7 2 27 27 H 0.97007 * 119.99921 * 0.02562 * 1 2 3 28 28 H 1.09060 * 109.48343 * 21.20113 * 10 9 7 29 29 H 1.09020 * 109.66484 * 141.40366 * 10 9 7 30 30 H 1.08934 * 109.56220 * 52.13584 * 11 10 9 31 31 H 1.09068 * 109.60340 * 172.32036 * 11 10 9 32 32 H 0.97093 * 121.39697 * 301.82235 * 12 11 10 33 33 H 1.08967 * 109.45085 * 354.98573 * 15 13 12 34 34 H 1.09095 * 109.33343 * 235.29553 * 15 13 12 35 35 H 1.09100 * 109.48784 * 169.44306 * 16 15 13 36 36 H 1.09053 * 109.76622 * 49.41574 * 16 15 13 37 37 H 1.08001 * 123.92524 * 0.02562 * 21 20 18 38 38 H 1.09125 * 109.25838 * 119.46010 * 25 17 16 39 39 H 1.09007 * 109.18958 * 359.75687 * 25 17 16 40 40 H 1.08981 * 109.37256 * 174.70557 * 26 9 7 41 41 H 1.09165 * 109.28564 * 294.42790 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3919 2.1075 -1.3948 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0843 -1.2055 0.1114 9 7 1.3325 -2.3843 -0.1431 10 6 1.8692 -3.6511 0.3957 11 6 2.5536 -4.4244 -0.7334 12 7 1.5235 -4.8706 -1.6924 13 6 1.6443 -4.4312 -2.9740 14 8 2.6762 -3.9245 -3.3613 15 6 0.4763 -4.5884 -3.9141 16 6 -0.0389 -3.2089 -4.3263 17 7 -0.7055 -2.5718 -3.1715 18 6 -2.0398 -2.6488 -2.9964 19 8 -2.5527 -2.1573 -2.0098 20 6 -2.8791 -3.3305 -4.0034 21 6 -4.2724 -3.3390 -3.9832 22 7 -4.7732 -4.0081 -4.9801 23 16 -3.6036 -4.5659 -5.8474 24 7 -2.4022 -3.9983 -5.0307 25 6 0.1625 -1.8374 -2.2272 26 6 0.0283 -2.4528 -0.8347 27 1 -0.4850 0.8401 -0.0004 28 1 2.5944 -3.4342 1.1808 29 1 1.0554 -4.2491 0.8063 30 1 3.2724 -3.7776 -1.2349 31 1 3.0698 -5.2925 -0.3218 32 1 0.7831 -5.4336 -1.4139 33 1 -0.3178 -5.1442 -3.4163 34 1 0.7980 -5.1357 -4.8013 35 1 -0.7537 -3.3166 -5.1434 36 1 0.7945 -2.5871 -4.6551 37 1 -4.8673 -2.8465 -3.2282 38 1 -0.1444 -0.7906 -2.1958 39 1 1.1966 -1.9028 -2.5659 40 1 -0.2837 -3.4938 -0.9157 41 1 -0.7141 -1.8956 -0.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070943669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:00 Heat of formation + Delta-G solvation = 24.836352 kcal Electronic energy + Delta-G solvation = -29241.789459 eV Core-core repulsion = 25285.169186 eV Total energy + Delta-G solvation = -3956.620273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25510 -40.87148 -39.82604 -37.81631 -36.95318 -35.38850 -34.53468 -33.17783 -31.98423 -30.94229 -28.98073 -27.98125 -26.18138 -25.13360 -24.40332 -22.87297 -22.06534 -21.28326 -20.43194 -20.35297 -18.59756 -18.15994 -18.05527 -17.49962 -16.98319 -16.77122 -16.42373 -16.37399 -16.12017 -15.68966 -15.33819 -15.17728 -14.77745 -14.43980 -14.28803 -14.04687 -13.81301 -13.50109 -13.24248 -13.09760 -12.94338 -12.80074 -12.55460 -12.42757 -12.28701 -12.19516 -12.13355 -11.92308 -11.79682 -11.71268 -11.35430 -10.95981 -10.74261 -10.56737 -10.17203 -9.94765 -9.67440 -8.59529 -7.63262 -5.27859 -0.62445 0.38948 0.52430 0.70398 1.44603 1.46952 1.54408 1.68217 1.94286 2.10167 2.51385 2.53614 3.30230 3.38755 3.55941 3.68627 3.88212 4.06628 4.11502 4.31105 4.38013 4.44834 4.53081 4.53905 4.64424 4.70062 4.79422 4.81702 4.91543 5.01011 5.02641 5.26621 5.33157 5.37629 5.58810 5.60713 5.73308 6.02165 6.35015 6.51773 6.73169 7.07070 7.21837 7.38326 7.88420 8.41653 9.25020 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.004651 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.077572 B = 6018.756391 C = 7188.434066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.042 4.042 3 Si 0.951 3.049 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.063 0.937 9 N -0.610 5.610 10 C 0.125 3.875 11 C 0.097 3.903 12 N -0.719 5.719 13 C 0.515 3.485 14 O -0.585 6.585 15 C -0.136 4.136 16 C 0.104 3.896 17 N -0.598 5.598 18 C 0.592 3.408 19 O -0.547 6.547 20 C 0.006 3.994 21 C 0.087 3.913 22 N -0.595 5.595 23 S 0.796 5.204 24 N -0.550 5.550 25 C 0.145 3.855 26 C 0.182 3.818 27 H 0.243 0.757 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.412 0.588 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.064 0.936 37 H 0.215 0.785 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 -15.264 -12.843 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.238 4.238 3 Si 0.781 3.219 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.379 4.379 8 H 0.081 0.919 9 N -0.334 5.334 10 C -0.001 4.001 11 C -0.030 4.030 12 N -0.373 5.373 13 C 0.304 3.696 14 O -0.465 6.465 15 C -0.177 4.177 16 C -0.020 4.020 17 N -0.330 5.330 18 C 0.375 3.625 19 O -0.423 6.423 20 C -0.166 4.166 21 C -0.104 4.104 22 N -0.438 5.438 23 S 0.838 5.162 24 N -0.403 5.403 25 C 0.022 3.978 26 C 0.056 3.944 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.249 0.751 33 H 0.112 0.888 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.082 0.918 37 H 0.231 0.769 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.587 -15.640 -14.252 22.161 hybrid contribution 0.293 2.310 1.969 3.050 sum -6.295 -13.330 -12.283 19.188 Atomic orbital electron populations 1.70121 1.05712 1.24648 1.55594 1.25655 0.95981 1.00245 1.01921 0.85487 0.78411 0.81149 0.76896 1.22246 1.22224 1.19456 1.19263 0.90426 0.84539 1.43679 0.91933 1.44734 1.21641 1.03432 1.63551 1.21643 0.97286 0.86957 0.94241 1.22300 0.91050 0.98614 0.91001 1.46430 1.29633 1.52308 1.08907 1.21415 0.88788 0.75895 0.83535 1.90657 1.32504 1.46304 1.77072 1.22036 0.95805 0.99327 1.00514 1.22481 0.98680 0.91657 0.89177 1.48851 1.05646 1.52026 1.26518 1.17151 0.81386 0.79583 0.84384 1.90897 1.72917 1.48306 1.30202 1.22084 0.93744 1.04294 0.96449 1.23684 0.91480 0.97974 0.97227 1.72130 1.39860 1.19147 1.12652 1.78755 0.77978 1.34716 1.24749 1.72526 1.38462 1.17534 1.11734 1.22139 0.90977 0.94669 0.90006 1.21069 0.87920 0.94908 0.90469 0.94697 0.91761 0.93042 0.92304 0.89387 0.75056 0.88827 0.85082 0.83537 0.91782 0.76865 0.94320 0.92707 0.94776 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.05 9.23 21.65 0.20 -53.85 16 2 C -0.04 -2.35 4.84 84.86 0.41 -1.94 16 3 Si 0.95 46.16 29.56 68.60 2.03 48.19 16 4 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.25 -13.53 9.23 84.02 0.78 -12.75 16 8 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 9 N -0.61 -29.60 2.71 -695.45 -1.89 -31.48 16 10 C 0.13 4.73 6.02 86.14 0.52 5.25 16 11 C 0.10 3.17 6.65 86.16 0.57 3.74 16 12 N -0.72 -21.23 3.81 -458.73 -1.75 -22.98 16 13 C 0.52 16.79 5.21 87.47 0.46 17.24 16 14 O -0.59 -24.24 16.03 -3.09 -0.05 -24.29 16 15 C -0.14 -3.28 5.99 29.84 0.18 -3.10 16 16 C 0.10 2.94 5.16 86.11 0.44 3.38 16 17 N -0.60 -21.55 2.60 -818.76 -2.13 -23.68 16 18 C 0.59 20.92 7.48 86.76 0.65 21.56 16 19 O -0.55 -23.97 15.83 -3.92 -0.06 -24.03 16 20 C 0.01 0.15 6.63 41.98 0.28 0.43 16 21 C 0.09 1.95 11.23 85.22 0.96 2.90 16 22 N -0.60 -11.29 11.41 -92.47 -1.05 -12.35 16 23 S 0.80 10.21 23.69 -56.49 -1.34 8.87 16 24 N -0.55 -10.58 7.63 -80.62 -0.62 -11.19 16 25 C 0.15 6.74 4.10 86.07 0.35 7.10 16 26 C 0.18 8.71 3.60 86.08 0.31 9.02 16 27 H 0.24 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.06 2.40 8.03 -2.36 -0.02 2.38 16 29 H 0.05 1.78 8.03 -2.38 -0.02 1.76 16 30 H 0.06 2.39 6.82 -2.42 -0.02 2.38 16 31 H 0.09 2.26 8.15 -2.35 -0.02 2.24 16 32 H 0.41 9.80 8.59 -92.64 -0.80 9.00 16 33 H 0.09 1.96 7.95 -2.40 -0.02 1.94 16 34 H 0.13 2.38 8.15 -2.34 -0.02 2.36 16 35 H 0.15 3.40 4.68 -4.56 -0.02 3.38 16 36 H 0.06 2.05 7.72 -2.36 -0.02 2.03 16 37 H 0.21 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.04 2.12 6.78 -2.32 -0.02 2.11 16 39 H 0.05 2.75 6.37 -2.38 -0.02 2.74 16 40 H 0.03 1.46 6.41 -2.40 -0.02 1.45 16 41 H 0.05 2.74 5.84 -2.30 -0.01 2.73 16 Total: -1.00 -74.85 337.68 -0.46 -75.31 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.30 Total: 18.65 kcal Atomic # 6 Polarization: 46.94 SS G_CDS: 5.90 Total: 52.85 kcal Atomic # 7 Polarization: -148.30 SS G_CDS: -7.23 Total: -155.54 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.11 Total: -48.32 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 10.21 SS G_CDS: -1.34 Total: 8.87 kcal Total: -74.85 -0.46 -75.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070943669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.144 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds