Wall clock time and date at job start Tue Mar 31 2020 22:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 120.00245 * 2 1 4 4 H 1.48494 * 109.47147 * 269.99963 * 3 2 1 5 5 H 1.48500 * 109.47131 * 29.99541 * 3 2 1 6 6 H 1.48497 * 109.47339 * 149.99731 * 3 2 1 7 7 C 1.38802 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00184 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00074 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47007 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00171 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00070 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00171 * 180.02562 * 13 11 10 15 15 H 1.09011 * 109.52066 * 325.08102 * 14 13 11 16 16 C 1.53036 * 109.49572 * 205.00008 * 14 13 11 17 17 C 1.53042 * 109.52579 * 178.67222 * 16 14 13 18 18 C 1.53194 * 109.31315 * 61.37221 * 17 16 14 19 19 N 1.46926 * 108.77486 * 305.36674 * 18 17 16 20 20 C 1.34773 * 120.62823 * 233.62868 * 19 18 17 21 21 O 1.21623 * 119.99866 * 173.22751 * 20 19 18 22 22 C 1.47233 * 120.00453 * 353.22985 * 20 19 18 23 23 C 1.36996 * 127.19259 * 157.00310 * 22 20 19 24 24 N 1.33328 * 106.37172 * 179.84734 * 23 22 20 25 25 N 1.28504 * 109.43612 * 0.42777 * 24 23 22 26 26 N 1.28708 * 110.64211 * 359.73013 * 25 24 23 27 27 H 0.97001 * 126.03718 * 179.97438 * 26 25 24 28 28 C 1.46926 * 118.73819 * 53.60394 * 19 18 17 29 29 H 0.96999 * 119.99326 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46865 * 60.00014 * 10 9 7 31 31 H 1.09003 * 109.47177 * 300.00129 * 10 9 7 32 32 H 0.96998 * 119.99452 * 0.02562 * 13 11 10 33 33 H 1.08998 * 109.46300 * 58.66220 * 16 14 13 34 34 H 1.08999 * 109.45841 * 298.68638 * 16 14 13 35 35 H 1.09003 * 109.49872 * 181.32329 * 17 16 14 36 36 H 1.08996 * 109.49952 * 301.39114 * 17 16 14 37 37 H 1.09002 * 109.58312 * 65.15043 * 18 17 16 38 38 H 1.08993 * 109.58974 * 185.57474 * 18 17 16 39 39 H 1.08001 * 126.81852 * 359.97438 * 23 22 20 40 40 H 1.08998 * 109.58617 * 66.18364 * 28 19 18 41 41 H 1.09000 * 109.58434 * 186.46002 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5730 -3.2327 0.0021 12 8 6.3440 -2.2964 0.0035 13 7 6.0456 -4.4949 0.0026 14 6 7.4906 -4.7360 0.0043 15 1 7.9892 -3.9649 -0.5832 16 6 7.7799 -6.1096 -0.6050 17 6 9.2913 -6.3484 -0.6340 18 6 9.8346 -6.3307 0.7983 19 7 9.4347 -5.0710 1.4402 20 6 10.3547 -4.2706 2.0142 21 8 10.0316 -3.1753 2.4326 22 6 11.7509 -4.7221 2.1347 23 6 12.8662 -3.9379 2.2687 24 7 13.9044 -4.7710 2.3453 25 7 13.4872 -5.9833 2.2578 26 7 12.2068 -6.0144 2.1302 27 1 11.6610 -6.8118 2.0454 28 6 8.0131 -4.7001 1.4439 29 1 -0.4849 0.8401 -0.0004 30 1 3.6439 -3.4314 -0.8893 31 1 3.6432 -3.4319 0.8907 32 1 5.4289 -5.2436 0.0019 33 1 7.3871 -6.1463 -1.6211 34 1 7.3017 -6.8821 -0.0027 35 1 9.4981 -7.3168 -1.0895 36 1 9.7727 -5.5624 -1.2158 37 1 9.4223 -7.1717 1.3558 38 1 10.9220 -6.4012 0.7776 39 1 12.8981 -2.8591 2.3070 40 1 7.4523 -5.4082 2.0541 41 1 7.8985 -3.6957 1.8515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070962910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:46 Heat of formation + Delta-G solvation = 42.344406 kcal Electronic energy + Delta-G solvation = -26466.009933 eV Core-core repulsion = 22510.148866 eV Total energy + Delta-G solvation = -3955.861067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.95076 -40.78555 -39.39449 -37.82861 -35.17589 -33.96028 -32.87172 -32.46220 -32.02010 -30.82433 -28.64784 -26.74130 -25.64544 -24.21111 -24.08260 -23.14841 -21.80409 -20.75856 -20.54958 -18.61714 -17.94290 -17.58459 -16.99415 -16.83010 -16.51059 -16.09788 -15.66324 -15.19224 -14.98924 -14.93893 -14.76464 -14.49545 -14.05041 -13.99317 -13.58816 -13.43069 -13.26017 -12.81451 -12.70699 -12.43344 -12.07853 -11.90494 -11.69751 -11.61812 -11.28902 -11.13699 -11.12537 -11.02308 -10.69927 -10.62567 -10.03779 -9.88097 -9.68292 -9.55272 -9.03757 -8.98808 -8.53097 -6.94925 -6.31334 -4.03456 0.38788 1.75306 1.84647 2.12357 2.54615 2.71283 2.86044 3.22884 3.32241 3.50030 3.55855 3.58905 3.94373 3.99546 4.15590 4.22202 4.31416 4.44779 4.45118 4.57227 4.65609 4.67891 4.75723 4.86698 5.03686 5.07885 5.16084 5.24957 5.35946 5.40848 5.49763 5.65192 5.68245 5.70964 5.80063 5.94802 5.99774 6.38076 6.61929 7.42895 7.45792 7.74302 7.91624 8.37177 8.38765 9.14899 10.77774 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.002278 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.134818 B =12288.915366 C =13257.402848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.510 6.510 13 N -0.732 5.732 14 C 0.135 3.865 15 H 0.095 0.905 16 C -0.128 4.128 17 C -0.129 4.129 18 C 0.086 3.914 19 N -0.606 5.606 20 C 0.593 3.407 21 O -0.496 6.496 22 C -0.061 4.061 23 C 0.034 3.966 24 N -0.266 5.266 25 N -0.050 5.050 26 N -0.380 5.380 27 H 0.452 0.548 28 C 0.102 3.898 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.402 0.598 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.206 0.794 40 H 0.076 0.924 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.409 -20.325 0.937 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.383 6.383 13 N -0.387 5.387 14 C 0.028 3.972 15 H 0.113 0.887 16 C -0.166 4.166 17 C -0.168 4.168 18 C -0.038 4.038 19 N -0.341 5.341 20 C 0.378 3.622 21 O -0.367 6.367 22 C -0.195 4.195 23 C -0.125 4.125 24 N -0.131 5.131 25 N -0.032 5.032 26 N -0.112 5.112 27 H 0.304 0.696 28 C -0.021 4.021 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.223 0.777 40 H 0.094 0.906 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 23.674 -18.734 1.297 30.218 hybrid contribution -2.490 -0.732 -0.205 2.603 sum 21.185 -19.466 1.092 28.791 Atomic orbital electron populations 1.69937 1.05914 1.27799 1.47973 1.24716 0.94464 0.98996 0.93144 0.86739 0.81943 0.83259 0.79953 1.19208 1.19909 1.15858 1.22305 0.88239 0.97523 1.58912 0.89382 1.84861 1.09308 0.99777 1.97425 1.23277 0.93705 1.04642 1.05858 1.20388 0.90744 0.82253 0.75001 1.90745 1.58639 1.42043 1.46908 1.45938 1.06420 1.08346 1.77977 1.21150 0.82191 0.98050 0.95784 0.88731 1.21828 0.96030 0.96258 1.02528 1.21851 0.95932 1.03637 0.95358 1.22205 0.99923 0.86540 0.95115 1.47922 1.07909 1.21743 1.56508 1.16841 0.82058 0.84550 0.78781 1.90956 1.78783 1.19265 1.47747 1.22331 0.97121 0.84935 1.15068 1.23984 0.86276 1.02054 1.00223 1.75024 1.26514 0.95003 1.16597 1.78220 0.91795 1.17246 1.15957 1.46326 1.07669 1.08801 1.48433 0.69621 1.22189 0.78226 1.04034 0.97681 0.91918 0.88439 0.88372 0.76405 0.90117 0.90770 0.89453 0.90568 0.89917 0.90352 0.77727 0.90588 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.70 27.74 -169.99 -4.72 16.99 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.12 -2.26 6.16 36.00 0.22 -2.04 16 11 C 0.53 8.66 7.82 -10.98 -0.09 8.58 16 12 O -0.51 -10.54 15.53 5.55 0.09 -10.46 16 13 N -0.73 -7.76 5.08 -53.69 -0.27 -8.03 16 14 C 0.13 1.23 2.60 -67.82 -0.18 1.06 16 15 H 0.09 1.15 7.58 -51.92 -0.39 0.76 16 16 C -0.13 -0.64 5.35 -26.69 -0.14 -0.78 16 17 C -0.13 -0.47 6.08 -26.61 -0.16 -0.63 16 18 C 0.09 0.30 5.41 -3.71 -0.02 0.28 16 19 N -0.61 -4.65 2.97 -174.11 -0.52 -5.17 16 20 C 0.59 6.06 7.65 -12.61 -0.10 5.97 16 21 O -0.50 -7.29 16.42 5.26 0.09 -7.20 16 22 C -0.06 -0.50 6.49 -82.34 -0.53 -1.04 16 23 C 0.03 0.30 11.94 -17.35 -0.21 0.10 16 24 N -0.27 -2.72 12.35 30.47 0.38 -2.34 16 25 N -0.05 -0.44 13.35 60.35 0.81 0.37 16 26 N -0.38 -2.28 5.78 33.31 0.19 -2.09 16 27 H 0.45 1.04 6.42 -190.33 -1.22 -0.18 16 28 C 0.10 0.96 6.02 -3.71 -0.02 0.94 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.10 1.65 8.14 -51.91 -0.42 1.22 16 32 H 0.40 2.98 8.60 -40.82 -0.35 2.63 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.08 0.20 4.16 -51.93 -0.22 -0.02 16 39 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.11 1.48 7.00 -51.93 -0.36 1.11 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -37.88 357.02 -6.73 -44.62 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.93 Total: -1.64 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.01 Total: 0.60 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 1.36 Total: -42.81 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.99 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.88 -6.73 -44.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070962910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.963 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds